Associations are from manual ordering of a clone or by a periodic analysis.
Clone Sequence Records
BS06145.3prime Sequence
549 bp (548 high quality bases) assembled on 2005-12-03
> BS06145.3prime
ATGGTCTAGAAAGCTTCTAAAACTTTGGCAAAGATTTTGGTGAAATACCT
TTTGATGACCGGCGATCCTGCTTGTGGATCTGGGCATAAGATTGCAGCGA
GCACCGGCGCAGTCGCTTGTCCCCTTTGTTCTGCGACTTGTAGTGCTGGT
TGATGTCCGAGGCGGCCTTCAGAAGCAGATAGACAAACACAAGGGCGAAC
AGGTAAATAATGGGCTCCGCTGTGTTACTCTTCTTGCCAACTTCCTTCTT
CTTGTGCCCCTCCGGGGACTTTATCAAACGACGAGGTTGCTTGCTGACCC
CATTTCCAGTGCCGTTTTTGGTTCTCTTCGTGGGCCTGCCTTGGGATCTT
CTTGAAACTGCCTGATTCCGATTGGATTCCTTTCCGAAAACGTCCAACCT
CTGGCACGATGCATCTGGAGCGGCGACATCCAATTCGGCGTCGGCCATGG
CTTCCGGCTGGGCATGGTGCAGGTCGAAGGCAGCCACGCCCGGCTTAAAA
TAGTGCCTGTAGTTGCGCTGCATCCCGGCTACCATGTCGACTGATAACT
BS06145.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8248-PA | 519 | CG8248-RA | 1..519 | 535..17 | 2595 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:42:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8248-RA | 1372 | CG8248-RA | 443..962 | 536..17 | 2600 | 100 | Minus |
CG8248-RB | 1369 | CG8248-RB | 443..959 | 536..17 | 2545 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:42:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8919524..8919926 | 134..536 | 2015 | 100 | Plus |
2R | 25286936 | 2R | 8919350..8919467 | 17..134 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:42:35 has no hits.
BS06145.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:19 Download gff for
BS06145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8248-PA | 1..519 | 17..535 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:23 Download gff for
BS06145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8248-PA | 1..519 | 17..535 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:07:23 Download gff for
BS06145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8248-RA | 440..964 | 12..540 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:59:30 Download gff for
BS06145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8248-RA | 440..964 | 12..540 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 06:59:30 Download gff for
BS06145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8919344..8919466 | 12..133 | 97 | <- | Plus |
2R | 8919524..8919929 | 134..540 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:07:23 Download gff for
BS06145.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4806849..4806971 | 12..133 | 97 | <- | Plus |
arm_2R | 4807029..4807434 | 134..540 | 99 | | Plus |
BS06145.5prime Sequence
549 bp (548 high quality bases) assembled on 2005-12-03
> BS06145.5prime
GAAGTTATCAGTCGACATGGTAGCCGGGATGCAGCGCAACTACAGGCACT
ATTTTAAGCCGGGCGTGGCTGCCTTCGACCTGCACCATGCCCAGCCGGAA
GCCATGGCCGACGCCGAATTGGATGTCGCCGCTCCAGATGCATCGTGCCA
GAGGTTGGACGTTTTCGGAAAGGAATCCAATCGGAATCAGGCAGTTTCAA
GAAGATCCCAAGGCAGGCCCACGAAGAGAACCAAAAACGGCACTGGAAAT
GGGGTCAGCAAGCAACCTCGTCGTTTGATAAAGTCCCCGGAGGGGCACAA
GAAGAAGGAAGTTGGCAAGAAGAGTAACACAGCGGAGCCCATTATTTACC
TGTTCGCCCTTGTGTTTGTCTATCTGCTTCTGAAGGCCGCCTCGGACATC
AACCAGCACTACAAGTCGCAGAACAAAGGGGACAAGCGACTGCGCCGGTG
CTCGCTGCAATCTTATGCCCAGATCCACAAGCAGGATCGCCGGTCATCAA
AAGGTATTTCACCAAAATCTTTGCCAAAGTTTTAGAAGCTTTCTAGACC
BS06145.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8248-PA | 519 | CG8248-RA | 1..519 | 17..535 | 2595 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:57:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8248-RA | 1372 | CG8248-RA | 443..962 | 16..535 | 2600 | 100 | Plus |
CG8248-RB | 1369 | CG8248-RB | 443..959 | 16..535 | 2545 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:57:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8919524..8919926 | 418..16 | 2015 | 100 | Minus |
2R | 25286936 | 2R | 8919350..8919467 | 535..418 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:57:47 has no hits.
BS06145.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:20 Download gff for
BS06145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8248-PA | 1..519 | 17..535 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:25 Download gff for
BS06145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8248-PA | 1..519 | 17..535 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 02:45:55 Download gff for
BS06145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8248-RA | 440..964 | 12..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:57:19 Download gff for
BS06145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8248-RA | 440..964 | 12..540 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:57:19 Download gff for
BS06145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8919344..8919466 | 419..540 | 97 | <- | Minus |
2R | 8919524..8919929 | 12..418 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 02:45:55 Download gff for
BS06145.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4806849..4806971 | 419..540 | 97 | <- | Minus |
arm_2R | 4807029..4807434 | 12..418 | 99 | | Minus |
BS06145.complete Sequence
551 bp (551 high quality bases) assembled on 2005-12-09
> BS06145.complete
GAAGTTATCAGTCGACATGGTAGCCGGGATGCAGCGCAACTACAGGCACT
ATTTTAAGCCGGGCGTGGCTGCCTTCGACCTGCACCATGCCCAGCCGGAA
GCCATGGCCGACGCCGAATTGGATGTCGCCGCTCCAGATGCATCGTGCCA
GAGGTTGGACGTTTTCGGAAAGGAATCCAATCGGAATCAGGCAGTTTCAA
GAAGATCCCAAGGCAGGCCCACGAAGAGAACCAAAAACGGCACTGGAAAT
GGGGTCAGCAAGCAACCTCGTCGTTTGATAAAGTCCCCGGAGGGGCACAA
GAAGAAGGAAGTTGGCAAGAAGAGTAACACAGCGGAGCCCATTATTTACC
TGTTCGCCCTTGTGTTTGTCTATCTGCTTCTGAAGGCCGCCTCGGACATC
AACCAGCACTACAAGTCGCAGAACAAAGGGGACAAGCGACTGCGCCGGTG
CTCGCTGCAATCTTATGCCCAGATCCACAAGCAGGATCGCCGGTCATCAA
AAGGTATTTCACCAAAATCTTTGCCAAAGTTTTAGAAGCTTTCTAGACCA
T
BS06145.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:25:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8248-RA | 684 | CG8248-PA | 165..684 | 16..535 | 2600 | 100 | Plus |
CG8248-RB | 681 | CG8248-PB | 165..681 | 16..535 | 2520 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:25:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8248-RA | 1372 | CG8248-RA | 443..962 | 16..535 | 2600 | 100 | Plus |
CG8248-RB | 1369 | CG8248-RB | 443..959 | 16..535 | 2520 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:25:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8919524..8919926 | 418..16 | 2015 | 100 | Minus |
2R | 25286936 | 2R | 8919350..8919467 | 535..418 | 590 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:25:48 has no hits.
BS06145.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:53 Download gff for
BS06145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8248-RA | 162..684 | 12..535 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:43 Download gff for
BS06145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8248-RA | 438..962 | 12..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:14:55 Download gff for
BS06145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8248-RA | 444..962 | 17..535 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:53 Download gff for
BS06145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8248-RA | 438..962 | 12..540 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:10:26 Download gff for
BS06145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8248-RA | 444..962 | 17..535 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:10:26 Download gff for
BS06145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8919350..8919466 | 419..535 | 100 | <- | Minus |
2R | 8919524..8919925 | 17..418 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:14:55 Download gff for
BS06145.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 4806855..4806971 | 419..535 | 100 | <- | Minus |
arm_2R | 4807029..4807430 | 17..418 | 100 | | Minus |
BS06145.pep Sequence
Translation from 16 to 534
> BS06145.pep
MVAGMQRNYRHYFKPGVAAFDLHHAQPEAMADAELDVAAPDASCQRLDVF
GKESNRNQAVSRRSQGRPTKRTKNGTGNGVSKQPRRLIKSPEGHKKKEVG
KKSNTAEPIIYLFALVFVYLLLKAASDINQHYKSQNKGDKRLRRCSLQSY
AQIHKQDRRSSKGISPKSLPKF*
BS06145.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8248-PA | 227 | CG8248-PA | 56..227 | 1..172 | 891 | 100 | Plus |
CG8248-PB | 226 | CG8248-PB | 56..226 | 1..172 | 874 | 99.4 | Plus |