Clone Sequence Records
BS06147.3prime Sequence
907 bp (841 high quality bases) assembled on 2005-12-03
> BS06147.3prime
ATGGTCTAGAAAGCTTTTAAGACATGTTGAAGTTTTGCGTAAAATCGTAT
TCGATGGTTGGTATGACGGTCTGAACGAATTTGAGGAATATGATCAAGTA
TAAATGCACTCCCAGCTGACCGCCGCCCTCCTCTACCGTCTGTATAATCT
TCTTCATGATATCCGCATGCCGACATGGATGCACAGAGGCCATATTGGGA
CCTGGAAGATGCGGATGGGACTCCATGGTGACAGTTTTCTTCGCGTGATC
CTGCGAGACATCCTCGTACATCTGTTCCACGGTCAGTGGCTTGCGCTGCT
CATCATAGCCCACCACCCAGAGTCGCGGCGTCTGATAGTACTTATCATAG
CTGATGTGCAGGTCGTACGTGCGTGTATGGAGCACAGAGTCACCGCTGGC
CTCCGCGTCGCCCGATGCGGCTGCCACTGGGCTGGCCTTTGCTTCCGGCT
CCGGCTTGCGTGTCGTGGTGGCTACAGCCGGATCGACCAGCTCCAGCATG
CCGCTCTCCTCGAAATCGTCCATGTCAATAGCCTCGTCGTCGTCCTCGTC
TTCAGCCTGGCCCCCAGCGCCCGGCGCAGATTTGTCGCTATCTGGAGTGT
GCATTTCTTCCTTTGTCTCCTCCATTGTCAGTTCGCAGATCTTGTCCTCC
AGCTGGGTGGTGCCATCATCGTTCAGTTGATGAGTCTCCACCCAACCGCC
GTCACCGGACTCCTCCTCCACCAGCGTCTCCTCGCCGACGTATTCCATCT
GCTTGCAGCGACGATAGCAGGGAACATTGCGCGTTATCAGGAATTGCTTA
TCCTTTGGTAGGTAGGGTTTTGTCTTGGTCTCATCGCCAGCGGCCCACTG
GCAAGTTGGACAATGGTGCACCAGGTGATCACCGGCGGCCACGAATTCTT
CCGGAGT
BS06147.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6877-PA | 993 | Aut1-RA | 103..993 | 907..17 | 4430 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:39:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg3-RA | 1221 | CG6877-RA | 234..1124 | 907..17 | 4440 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:38:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18749791..18750386 | 612..17 | 2980 | 100 | Minus |
3L | 28110227 | 3L | 18749547..18749739 | 802..610 | 965 | 100 | Minus |
3L | 28110227 | 3L | 18749374..18749479 | 907..802 | 515 | 99.1 | Minus |
Blast to na_te.dros performed on 2015-02-09 01:39:01 has no hits.
BS06147.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:23 Download gff for
BS06147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aut1-PA | 103..993 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:29 Download gff for
BS06147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6877-PA | 103..993 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:56:26 Download gff for
BS06147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aut1-RA | 234..1124 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:09:58 Download gff for
BS06147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg3-RA | 234..1124 | 17..907 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:09:58 Download gff for
BS06147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18749374..18749479 | 802..907 | 99 | -> | Minus |
3L | 18749548..18749738 | 611..801 | 100 | -> | Minus |
3L | 18749793..18750386 | 17..610 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:56:26 Download gff for
BS06147.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18742474..18742579 | 802..907 | 99 | -> | Minus |
arm_3L | 18742648..18742838 | 611..801 | 100 | -> | Minus |
arm_3L | 18742893..18743486 | 17..610 | 100 | | Minus |
BS06147.5prime Sequence
785 bp (784 high quality bases) assembled on 2005-12-03
> BS06147.5prime
GAAGTTATCAGTCGACATGCAGAGTGTTCTCAACACCGTCAAGGGCACAG
CGCTCAATGTGGCCGAATATCTGACGCCCGTTTTGAAGGAATCGAAATTC
CGTGAGACAGGTGTTCTCACTCCGGAAGAATTCGTGGCCGCCGGTGATCA
CCTGGTGCACCATTGTCCAACTTGGCAGTGGGCCGCTGGCGATGAGACCA
AGACAAAACCCTACCTACCAAAGGATAAGCAATTCCTGATAACGCGCAAT
GTTCCCTGCTATCGTCGCTGCAAGCAGATGGAATACGTCGGCGAGGAGAC
GCTGGTGGAGGAGGAGTCCGGTGACGGCGGTTGGGTGGAGACTCATCAAC
TGAACGATGATGGCACCACCCAGCTGGAGGACAAGATCTGCGAACTGACA
ATGGAGGAGACAAAGGAAGAAATGCACACTCCAGATAGCGACAAATCTGC
GCCGGGCGCTGGGGGCCAGGCTGAAGACGAGGACGACGACGAGGCTATTG
ACATGGACGATTTCGAGGAGAGCGGCATGCTGGAGCTGGTCGATCCGGCT
GTAGCCACCACGACACGCAAGCCGGAGCCGGAAGCAAAGGCCAGCCCAGT
GGCAGCCGCATCGGGCGACGCGGAGGCCAGCGGTGACTCTGTGCTCCATA
CACGCACGTACGACCTGCACATCAGCTATGATAAGTACTATCAGACGCCG
CGACTCTGGGTGGTGGGCTATGATGAGCAGCGCAAGCCACTGACCGTGGA
ACAGATGTACGAGGATGTCTCGCAGGATCACGCGA
BS06147.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6877-PA | 993 | Aut1-RA | 1..769 | 17..785 | 3845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg3-RA | 1221 | CG6877-RA | 128..900 | 13..785 | 3850 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18749791..18750162 | 414..785 | 1860 | 100 | Plus |
3L | 28110227 | 3L | 18749547..18749739 | 224..416 | 965 | 100 | Plus |
3L | 28110227 | 3L | 18749336..18749479 | 81..224 | 705 | 99.3 | Plus |
3L | 28110227 | 3L | 18748814..18748890 | 13..89 | 370 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:34:44 has no hits.
BS06147.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:24 Download gff for
BS06147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aut1-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:30 Download gff for
BS06147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6877-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:15:03 Download gff for
BS06147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aut1-RA | 125..899 | 9..784 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:04 Download gff for
BS06147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg3-RA | 125..899 | 9..784 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:04 Download gff for
BS06147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18748811..18748889 | 9..88 | 96 | -> | Plus |
3L | 18749344..18749479 | 89..224 | 100 | -> | Plus |
3L | 18749548..18749738 | 225..415 | 100 | -> | Plus |
3L | 18749793..18750161 | 416..784 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:15:03 Download gff for
BS06147.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18742648..18742838 | 225..415 | 100 | -> | Plus |
arm_3L | 18741911..18741989 | 9..88 | 96 | -> | Plus |
arm_3L | 18742444..18742579 | 89..224 | 100 | -> | Plus |
arm_3L | 18742893..18743261 | 416..784 | 100 | | Plus |
BS06147.complete Sequence
1025 bp (1025 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635372
> BS06147.complete
GAAGTTATCAGTCGACATGCAGAGTGTTCTCAACACCGTCAAGGGCACAG
CGCTCAATGTGGCCGAATATCTGACGCCCGTTTTGAAGGAATCGAAATTC
CGTGAGACAGGTGTTCTCACTCCGGAAGAATTCGTGGCCGCCGGTGATCA
CCTGGTGCACCATTGTCCAACTTGGCAGTGGGCCGCTGGCGATGAGACCA
AGACAAAACCCTACCTACCAAAGGATAAGCAATTCCTGATAACGCGCAAT
GTTCCCTGCTATCGTCGCTGCAAGCAGATGGAATACGTCGGCGAGGAGAC
GCTGGTGGAGGAGGAGTCCGGTGACGGCGGTTGGGTGGAGACTCATCAAC
TGAACGATGATGGCACCACCCAGCTGGAGGACAAGATCTGCGAACTGACA
ATGGAGGAGACAAAGGAAGAAATGCACACTCCAGATAGCGACAAATCTGC
GCCGGGCGCTGGGGGCCAGGCTGAAGACGAGGACGACGACGAGGCTATTG
ACATGGACGATTTCGAGGAGAGCGGCATGCTGGAGCTGGTCGATCCGGCT
GTAGCCACCACGACACGCAAGCCGGAGCCGGAAGCAAAGGCCAGCCCAGT
GGCAGCCGCATCGGGCGACGCGGAGGCCAGCGGTGACTCTGTGCTCCATA
CACGCACGTACGACCTGCACATCAGCTATGATAAGTACTATCAGACGCCG
CGACTCTGGGTGGTGGGCTATGATGAGCAGCGCAAGCCACTGACCGTGGA
ACAGATGTACGAGGATGTCTCGCAGGATCACGCGAAGAAAACTGTCACCA
TGGAGTCCCATCCGCATCTTCCAGGTCCCAATATGGCCTCTGTGCATCCA
TGTCGGCATGCGGATATCATGAAGAAGATTATACAGACGGTAGAGGAGGG
CGGCGGTCAGCTGGGAGTGCATTTATACTTGATCATATTCCTCAAATTCG
TTCAGACCGTCATACCAACCATCGAATACGATTTTACGCAAAACTTCAAC
ATGTCTTAAAAGCTTTCTAGACCAT
BS06147.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg3-RA | 993 | CG6877-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg3-RA | 1221 | CG6877-RA | 128..1124 | 13..1009 | 4970 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 18749791..18750386 | 414..1009 | 2980 | 100 | Plus |
3L | 28110227 | 3L | 18749547..18749739 | 224..416 | 965 | 100 | Plus |
3L | 28110227 | 3L | 18749336..18749479 | 81..224 | 705 | 99.3 | Plus |
3L | 28110227 | 3L | 18748814..18748890 | 13..89 | 370 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:48:40 has no hits.
BS06147.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:54 Download gff for
BS06147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aut1-RA | 1..993 | 17..1009 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:44 Download gff for
BS06147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aut1-RA | 104..1103 | 9..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:59 Download gff for
BS06147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aut1-RA | 132..1122 | 17..1007 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:54 Download gff for
BS06147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Aut1-RA | 104..1103 | 9..1009 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:58 Download gff for
BS06147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Atg3-RA | 132..1122 | 17..1007 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:58 Download gff for
BS06147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 18748818..18748889 | 17..88 | 100 | -> | Plus |
3L | 18749344..18749479 | 89..224 | 100 | -> | Plus |
3L | 18749548..18749738 | 225..415 | 100 | -> | Plus |
3L | 18749793..18750384 | 416..1007 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:59 Download gff for
BS06147.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 18741918..18741989 | 17..88 | 100 | -> | Plus |
arm_3L | 18742444..18742579 | 89..224 | 100 | -> | Plus |
arm_3L | 18742648..18742838 | 225..415 | 100 | -> | Plus |
arm_3L | 18742893..18743484 | 416..1007 | 100 | | Plus |
BS06147.pep Sequence
Translation from 16 to 1008
> BS06147.pep
MQSVLNTVKGTALNVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHC
PTWQWAAGDETKTKPYLPKDKQFLITRNVPCYRRCKQMEYVGEETLVEEE
SGDGGWVETHQLNDDGTTQLEDKICELTMEETKEEMHTPDSDKSAPGAGG
QAEDEDDDEAIDMDDFEESGMLELVDPAVATTTRKPEPEAKASPVAAASG
DAEASGDSVLHTRTYDLHISYDKYYQTPRLWVVGYDEQRKPLTVEQMYED
VSQDHAKKTVTMESHPHLPGPNMASVHPCRHADIMKKIIQTVEEGGGQLG
VHLYLIIFLKFVQTVIPTIEYDFTQNFNMS*
BS06147.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Atg3-PA | 330 | CG6877-PA | 1..330 | 1..330 | 1761 | 100 | Plus |