Clone BS06147 Report

Search the DGRC for BS06147

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptAtg3-RA
Protein status:BS06147.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06147.3prime Sequence

907 bp (841 high quality bases) assembled on 2005-12-03

> BS06147.3prime
ATGGTCTAGAAAGCTTTTAAGACATGTTGAAGTTTTGCGTAAAATCGTAT
TCGATGGTTGGTATGACGGTCTGAACGAATTTGAGGAATATGATCAAGTA
TAAATGCACTCCCAGCTGACCGCCGCCCTCCTCTACCGTCTGTATAATCT
TCTTCATGATATCCGCATGCCGACATGGATGCACAGAGGCCATATTGGGA
CCTGGAAGATGCGGATGGGACTCCATGGTGACAGTTTTCTTCGCGTGATC
CTGCGAGACATCCTCGTACATCTGTTCCACGGTCAGTGGCTTGCGCTGCT
CATCATAGCCCACCACCCAGAGTCGCGGCGTCTGATAGTACTTATCATAG
CTGATGTGCAGGTCGTACGTGCGTGTATGGAGCACAGAGTCACCGCTGGC
CTCCGCGTCGCCCGATGCGGCTGCCACTGGGCTGGCCTTTGCTTCCGGCT
CCGGCTTGCGTGTCGTGGTGGCTACAGCCGGATCGACCAGCTCCAGCATG
CCGCTCTCCTCGAAATCGTCCATGTCAATAGCCTCGTCGTCGTCCTCGTC
TTCAGCCTGGCCCCCAGCGCCCGGCGCAGATTTGTCGCTATCTGGAGTGT
GCATTTCTTCCTTTGTCTCCTCCATTGTCAGTTCGCAGATCTTGTCCTCC
AGCTGGGTGGTGCCATCATCGTTCAGTTGATGAGTCTCCACCCAACCGCC
GTCACCGGACTCCTCCTCCACCAGCGTCTCCTCGCCGACGTATTCCATCT
GCTTGCAGCGACGATAGCAGGGAACATTGCGCGTTATCAGGAATTGCTTA
TCCTTTGGTAGGTAGGGTTTTGTCTTGGTCTCATCGCCAGCGGCCCACTG
GCAAGTTGGACAATGGTGCACCAGGTGATCACCGGCGGCCACGAATTCTT
CCGGAGT

BS06147.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG6877-PA 993 Aut1-RA 103..993 907..17 4430 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:39:05
Subject Length Description Subject Range Query Range Score Percent Strand
Atg3-RA 1221 CG6877-RA 234..1124 907..17 4440 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:38:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18749791..18750386 612..17 2980 100 Minus
3L 28110227 3L 18749547..18749739 802..610 965 100 Minus
3L 28110227 3L 18749374..18749479 907..802 515 99.1 Minus
Blast to na_te.dros performed on 2015-02-09 01:39:01 has no hits.

BS06147.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:23 Download gff for BS06147.3prime
Subject Subject Range Query Range Percent Splice Strand
Aut1-PA 103..993 17..907 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:29 Download gff for BS06147.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6877-PA 103..993 17..907 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:56:26 Download gff for BS06147.3prime
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 234..1124 17..907 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:09:58 Download gff for BS06147.3prime
Subject Subject Range Query Range Percent Splice Strand
Atg3-RA 234..1124 17..907 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:09:58 Download gff for BS06147.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 18749374..18749479 802..907 99 -> Minus
3L 18749548..18749738 611..801 100 -> Minus
3L 18749793..18750386 17..610 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:56:26 Download gff for BS06147.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18742474..18742579 802..907 99 -> Minus
arm_3L 18742648..18742838 611..801 100 -> Minus
arm_3L 18742893..18743486 17..610 100   Minus

BS06147.5prime Sequence

785 bp (784 high quality bases) assembled on 2005-12-03

> BS06147.5prime
GAAGTTATCAGTCGACATGCAGAGTGTTCTCAACACCGTCAAGGGCACAG
CGCTCAATGTGGCCGAATATCTGACGCCCGTTTTGAAGGAATCGAAATTC
CGTGAGACAGGTGTTCTCACTCCGGAAGAATTCGTGGCCGCCGGTGATCA
CCTGGTGCACCATTGTCCAACTTGGCAGTGGGCCGCTGGCGATGAGACCA
AGACAAAACCCTACCTACCAAAGGATAAGCAATTCCTGATAACGCGCAAT
GTTCCCTGCTATCGTCGCTGCAAGCAGATGGAATACGTCGGCGAGGAGAC
GCTGGTGGAGGAGGAGTCCGGTGACGGCGGTTGGGTGGAGACTCATCAAC
TGAACGATGATGGCACCACCCAGCTGGAGGACAAGATCTGCGAACTGACA
ATGGAGGAGACAAAGGAAGAAATGCACACTCCAGATAGCGACAAATCTGC
GCCGGGCGCTGGGGGCCAGGCTGAAGACGAGGACGACGACGAGGCTATTG
ACATGGACGATTTCGAGGAGAGCGGCATGCTGGAGCTGGTCGATCCGGCT
GTAGCCACCACGACACGCAAGCCGGAGCCGGAAGCAAAGGCCAGCCCAGT
GGCAGCCGCATCGGGCGACGCGGAGGCCAGCGGTGACTCTGTGCTCCATA
CACGCACGTACGACCTGCACATCAGCTATGATAAGTACTATCAGACGCCG
CGACTCTGGGTGGTGGGCTATGATGAGCAGCGCAAGCCACTGACCGTGGA
ACAGATGTACGAGGATGTCTCGCAGGATCACGCGA

BS06147.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6877-PA 993 Aut1-RA 1..769 17..785 3845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:45
Subject Length Description Subject Range Query Range Score Percent Strand
Atg3-RA 1221 CG6877-RA 128..900 13..785 3850 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:34:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18749791..18750162 414..785 1860 100 Plus
3L 28110227 3L 18749547..18749739 224..416 965 100 Plus
3L 28110227 3L 18749336..18749479 81..224 705 99.3 Plus
3L 28110227 3L 18748814..18748890 13..89 370 98.7 Plus
Blast to na_te.dros performed on 2015-02-11 09:34:44 has no hits.

BS06147.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:24 Download gff for BS06147.5prime
Subject Subject Range Query Range Percent Splice Strand
Aut1-PA 1..768 17..784 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:30 Download gff for BS06147.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6877-PA 1..768 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:15:03 Download gff for BS06147.5prime
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 125..899 9..784 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:04 Download gff for BS06147.5prime
Subject Subject Range Query Range Percent Splice Strand
Atg3-RA 125..899 9..784 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:04 Download gff for BS06147.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 18748811..18748889 9..88 96 -> Plus
3L 18749344..18749479 89..224 100 -> Plus
3L 18749548..18749738 225..415 100 -> Plus
3L 18749793..18750161 416..784 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:15:03 Download gff for BS06147.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18742648..18742838 225..415 100 -> Plus
arm_3L 18741911..18741989 9..88 96 -> Plus
arm_3L 18742444..18742579 89..224 100 -> Plus
arm_3L 18742893..18743261 416..784 100   Plus

BS06147.complete Sequence

1025 bp (1025 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635372

> BS06147.complete
GAAGTTATCAGTCGACATGCAGAGTGTTCTCAACACCGTCAAGGGCACAG
CGCTCAATGTGGCCGAATATCTGACGCCCGTTTTGAAGGAATCGAAATTC
CGTGAGACAGGTGTTCTCACTCCGGAAGAATTCGTGGCCGCCGGTGATCA
CCTGGTGCACCATTGTCCAACTTGGCAGTGGGCCGCTGGCGATGAGACCA
AGACAAAACCCTACCTACCAAAGGATAAGCAATTCCTGATAACGCGCAAT
GTTCCCTGCTATCGTCGCTGCAAGCAGATGGAATACGTCGGCGAGGAGAC
GCTGGTGGAGGAGGAGTCCGGTGACGGCGGTTGGGTGGAGACTCATCAAC
TGAACGATGATGGCACCACCCAGCTGGAGGACAAGATCTGCGAACTGACA
ATGGAGGAGACAAAGGAAGAAATGCACACTCCAGATAGCGACAAATCTGC
GCCGGGCGCTGGGGGCCAGGCTGAAGACGAGGACGACGACGAGGCTATTG
ACATGGACGATTTCGAGGAGAGCGGCATGCTGGAGCTGGTCGATCCGGCT
GTAGCCACCACGACACGCAAGCCGGAGCCGGAAGCAAAGGCCAGCCCAGT
GGCAGCCGCATCGGGCGACGCGGAGGCCAGCGGTGACTCTGTGCTCCATA
CACGCACGTACGACCTGCACATCAGCTATGATAAGTACTATCAGACGCCG
CGACTCTGGGTGGTGGGCTATGATGAGCAGCGCAAGCCACTGACCGTGGA
ACAGATGTACGAGGATGTCTCGCAGGATCACGCGAAGAAAACTGTCACCA
TGGAGTCCCATCCGCATCTTCCAGGTCCCAATATGGCCTCTGTGCATCCA
TGTCGGCATGCGGATATCATGAAGAAGATTATACAGACGGTAGAGGAGGG
CGGCGGTCAGCTGGGAGTGCATTTATACTTGATCATATTCCTCAAATTCG
TTCAGACCGTCATACCAACCATCGAATACGATTTTACGCAAAACTTCAAC
ATGTCTTAAAAGCTTTCTAGACCAT

BS06147.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
Atg3-RA 993 CG6877-PA 1..993 17..1009 4965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
Atg3-RA 1221 CG6877-RA 128..1124 13..1009 4970 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:48:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 18749791..18750386 414..1009 2980 100 Plus
3L 28110227 3L 18749547..18749739 224..416 965 100 Plus
3L 28110227 3L 18749336..18749479 81..224 705 99.3 Plus
3L 28110227 3L 18748814..18748890 13..89 370 98.7 Plus
Blast to na_te.dros performed on 2014-11-27 06:48:40 has no hits.

BS06147.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:54 Download gff for BS06147.complete
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 1..993 17..1009 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:44 Download gff for BS06147.complete
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 104..1103 9..1009 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:54:59 Download gff for BS06147.complete
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 132..1122 17..1007 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:54 Download gff for BS06147.complete
Subject Subject Range Query Range Percent Splice Strand
Aut1-RA 104..1103 9..1009 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:58 Download gff for BS06147.complete
Subject Subject Range Query Range Percent Splice Strand
Atg3-RA 132..1122 17..1007 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:58 Download gff for BS06147.complete
Subject Subject Range Query Range Percent Splice Strand
3L 18748818..18748889 17..88 100 -> Plus
3L 18749344..18749479 89..224 100 -> Plus
3L 18749548..18749738 225..415 100 -> Plus
3L 18749793..18750384 416..1007 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:54:59 Download gff for BS06147.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 18741918..18741989 17..88 100 -> Plus
arm_3L 18742444..18742579 89..224 100 -> Plus
arm_3L 18742648..18742838 225..415 100 -> Plus
arm_3L 18742893..18743484 416..1007 100   Plus

BS06147.pep Sequence

Translation from 16 to 1008

> BS06147.pep
MQSVLNTVKGTALNVAEYLTPVLKESKFRETGVLTPEEFVAAGDHLVHHC
PTWQWAAGDETKTKPYLPKDKQFLITRNVPCYRRCKQMEYVGEETLVEEE
SGDGGWVETHQLNDDGTTQLEDKICELTMEETKEEMHTPDSDKSAPGAGG
QAEDEDDDEAIDMDDFEESGMLELVDPAVATTTRKPEPEAKASPVAAASG
DAEASGDSVLHTRTYDLHISYDKYYQTPRLWVVGYDEQRKPLTVEQMYED
VSQDHAKKTVTMESHPHLPGPNMASVHPCRHADIMKKIIQTVEEGGGQLG
VHLYLIIFLKFVQTVIPTIEYDFTQNFNMS*

BS06147.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:02
Subject Length Description Subject Range Query Range Score Percent Strand
Atg3-PA 330 CG6877-PA 1..330 1..330 1761 100 Plus