Clone BS06149 Report

Search the DGRC for BS06149

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:49
Vector:pDNR-Dual
Associated Gene/Transcriptfau-RA
Protein status:BS06149.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06149.3prime Sequence

426 bp (425 high quality bases) assembled on 2005-12-03

> BS06149.3prime
ATGGTCTAGAAAGCTTCTACACGTGGTAGGAGAAGTGGCGGTACTTGGTG
CCGCCGGGCAGGTTGCCGCTGGTGGTCGAAGAATAGCTGTAGCCACCGGG
TCCGGCGCCAGTGGTGCTGGTCCGCTCTGTGCTGTAGTTGTACGAGCCGC
CGGGACCGCTGCGCGACGTCTTCTCCACAGTCGACGTGTACGTGGAGCGC
TCCGGGCGGTACGAGTGCGGGTTGCTCGAGTCGTAGCTGCTCTTCTCCAC
GGACGACTTCGAGGTGTACGAGTAGTCCGAGGAGGCCCGGCTGCGGTGCG
AGCCCGGTCTGTCCGTGCACAGGTCTAAGCGTGGAGTCGTAACTGCGTAG
GAAGTTGTCACCGGCCTCGAGGAGTAGGTTCTGCGGGTCGTAAATCCACT
TTCGTAAACCATGTCGACTGATAACT

BS06149.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG6544-PC 396 fau-RC 1..396 412..17 1980 100 Minus
CG6544-PB 492 fau-RB 1..76 412..337 380 100 Minus
CG6544-PD 297 fau-RD 1..75 412..338 375 100 Minus
CG6544-PA 1860 fau-RA 1..75 412..338 375 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:07:36
Subject Length Description Subject Range Query Range Score Percent Strand
fau-RA 1020 CG45077-RA 122..519 414..17 1990 100 Minus
CG45078-RA 1925 CG45078-RA 1245..1566 338..17 1610 100 Minus
CG45078-RA 1925 CG45078-RA 122..199 414..337 390 100 Minus
CG45076-RI 2109 CG45076-RI 122..198 414..338 385 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10773698..10774019 17..338 1610 100 Plus
3R 32079331 3R 10777177..10777253 338..414 385 100 Plus
Blast to na_te.dros performed on 2015-01-31 17:07:32 has no hits.

BS06149.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:25 Download gff for BS06149.3prime
Subject Subject Range Query Range Percent Splice Strand
fau-PC 1..396 17..412 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:31 Download gff for BS06149.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6544-PC 1..396 17..412 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:35 Download gff for BS06149.3prime
Subject Subject Range Query Range Percent Splice Strand
fau-RC 116..522 14..422 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:23 Download gff for BS06149.3prime
Subject Subject Range Query Range Percent Splice Strand
fau-RA 116..522 14..422 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:23 Download gff for BS06149.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10773695..10774018 14..337 99 <- Plus
3R 10777177..10777259 338..422 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:35 Download gff for BS06149.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6599417..6599740 14..337 99 <- Plus
arm_3R 6602899..6602981 338..422 96   Plus

BS06149.5prime Sequence

426 bp (425 high quality bases) assembled on 2005-12-03

> BS06149.5prime
GAAGTTATCAGTCGACATGGTTTACGAAAGTGGATTTACGACCCGCAGAA
CCTACTCCTCGAGGCCGGTGACAACTTCCTACGCAGTTACGACTCCACGC
TTAGACCTGTGCACGGACAGACCGGGCTCGCACCGCAGCCGGGCCTCCTC
GGACTACTCGTACACCTCGAAGTCGTCCGTGGAGAAGAGCAGCTACGACT
CGAGCAACCCGCACTCGTACCGCCCGGAGCGCTCCACGTACACGTCGACT
GTGGAGAAGACGTCGCGCAGCGGTCCCGGCGGCTCGTACAACTACAGCAC
AGAGCGGACCAGCACCACTGGCGCCGGACCCGGTGGCTACAGCTATTCTT
CGACCACCAGCGGCAACCTGCCCGGCGGCACCAAGTACCGCCACTTCTCC
TACCACGTGTAGAAGCTTTCTAGACC

BS06149.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG6544-PC 396 fau-RC 1..396 17..412 1980 100 Plus
CG6544-PB 492 fau-RB 1..76 17..92 380 100 Plus
CG6544-PD 297 fau-RD 1..75 17..91 375 100 Plus
CG6544-PA 1860 fau-RA 1..75 17..91 375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:07:12
Subject Length Description Subject Range Query Range Score Percent Strand
fau-RA 1020 CG45077-RA 122..519 15..412 1990 100 Plus
CG45078-RA 1925 CG45078-RA 1245..1566 91..412 1610 100 Plus
CG45078-RA 1925 CG45078-RA 122..199 15..92 390 100 Plus
CG45076-RI 2109 CG45076-RI 122..198 15..91 385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:07:06
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10773698..10774019 412..91 1610 100 Minus
3R 32079331 3R 10777177..10777253 91..15 385 100 Minus
Blast to na_te.dros performed on 2015-02-11 16:07:09 has no hits.

BS06149.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:27 Download gff for BS06149.5prime
Subject Subject Range Query Range Percent Splice Strand
fau-PC 1..396 17..412 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:33 Download gff for BS06149.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6544-PC 1..396 17..412 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:34:34 Download gff for BS06149.5prime
Subject Subject Range Query Range Percent Splice Strand
fau-RC 116..522 7..415 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:48 Download gff for BS06149.5prime
Subject Subject Range Query Range Percent Splice Strand
fau-RA 116..522 7..415 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:48 Download gff for BS06149.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10777177..10777259 7..91 96   Minus
3R 10773695..10774018 92..415 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:34:34 Download gff for BS06149.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6599417..6599740 92..415 99 <- Minus
arm_3R 6602899..6602981 7..91 96   Minus

BS06149.complete Sequence

428 bp assembled on 2007-10-17

GenBank Submission: FJ635373

> BS06149.complete
GAAGTTATCAGTCGACATGGTTTACGAAAGTGGATTTACGACCCGCAGAA
CCTACTCCTCGAGGCCGGTGACAACTTCCTACGCAGTTACGACTCCACGC
TTAGACCTGTGCACGGACAGACCGGGCTCGCACCGCAGCCGGGCCTCCTC
GGACTACTCGTACACCTCGAAGTCGTCCGTGGAGAAGAGCAGCTACGACT
CGAGCAACCCGCACTCGTACCGCCCGGAGCGCTCCACGTACACGTCGACT
GTGGAGAAGACGTCGCGCAGCGGTCCCGGCGGCTCGTACAACTACAGCAC
AGAGCGGACCAGCACCACTGGCGCCGGACCCGGTGGCTACAGCTATTCTT
CGACCACCAGCGGCAACCTGCCCGGCGGCACCAAGTACCGCCACTTCTCC
TACCACGTGTAGAAGCTTTCTAGACCAT

BS06149.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:10:41
Subject Length Description Subject Range Query Range Score Percent Strand
fau-RA 396 CG45077-PA 1..396 17..412 1980 100 Plus
CG45078-RA 492 CG45078-PA 1..76 17..92 380 100 Plus
CG45076-RI 1032 CG45076-PI 1..75 17..91 375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:42
Subject Length Description Subject Range Query Range Score Percent Strand
fau-RA 1020 CG45077-RA 122..519 15..412 1990 100 Plus
CG45078-RA 1925 CG45078-RA 1245..1566 91..412 1610 100 Plus
CG45078-RA 1925 CG45078-RA 122..199 15..92 390 100 Plus
CG45076-RI 2109 CG45076-RI 122..198 15..91 385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10773698..10774019 412..91 1610 100 Minus
3R 32079331 3R 10777177..10777253 91..15 385 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:10:40 has no hits.

BS06149.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:34 Download gff for BS06149.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RC 1..396 17..412 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:33 Download gff for BS06149.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RC 103..509 7..415 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:44 Download gff for BS06149.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RC 124..519 17..412 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:47 Download gff for BS06149.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RC 111..506 17..412 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:10 Download gff for BS06149.complete
Subject Subject Range Query Range Percent Splice Strand
fau-RA 124..519 17..412 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:10 Download gff for BS06149.complete
Subject Subject Range Query Range Percent Splice Strand
3R 10773698..10774018 92..412 100 <- Minus
3R 10777177..10777251 17..91 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:44 Download gff for BS06149.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6599420..6599740 92..412 100 <- Minus
arm_3R 6602899..6602973 17..91 100   Minus

BS06149.pep Sequence

Translation from 16 to 411

> BS06149.pep
MVYESGFTTRRTYSSRPVTTSYAVTTPRLDLCTDRPGSHRSRASSDYSYT
SKSSVEKSSYDSSNPHSYRPERSTYTSTVEKTSRSGPGGSYNYSTERTST
TGAGPGGYSYSSTTSGNLPGGTKYRHFSYHV*

BS06149.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:37
Subject Length Description Subject Range Query Range Score Percent Strand
fau-PA 131 CG45077-PA 1..131 1..131 695 100 Plus