Clone Sequence Records
BS06149.3prime Sequence
426 bp (425 high quality bases) assembled on 2005-12-03
> BS06149.3prime
ATGGTCTAGAAAGCTTCTACACGTGGTAGGAGAAGTGGCGGTACTTGGTG
CCGCCGGGCAGGTTGCCGCTGGTGGTCGAAGAATAGCTGTAGCCACCGGG
TCCGGCGCCAGTGGTGCTGGTCCGCTCTGTGCTGTAGTTGTACGAGCCGC
CGGGACCGCTGCGCGACGTCTTCTCCACAGTCGACGTGTACGTGGAGCGC
TCCGGGCGGTACGAGTGCGGGTTGCTCGAGTCGTAGCTGCTCTTCTCCAC
GGACGACTTCGAGGTGTACGAGTAGTCCGAGGAGGCCCGGCTGCGGTGCG
AGCCCGGTCTGTCCGTGCACAGGTCTAAGCGTGGAGTCGTAACTGCGTAG
GAAGTTGTCACCGGCCTCGAGGAGTAGGTTCTGCGGGTCGTAAATCCACT
TTCGTAAACCATGTCGACTGATAACT
BS06149.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6544-PC | 396 | fau-RC | 1..396 | 412..17 | 1980 | 100 | Minus |
CG6544-PB | 492 | fau-RB | 1..76 | 412..337 | 380 | 100 | Minus |
CG6544-PD | 297 | fau-RD | 1..75 | 412..338 | 375 | 100 | Minus |
CG6544-PA | 1860 | fau-RA | 1..75 | 412..338 | 375 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:07:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fau-RA | 1020 | CG45077-RA | 122..519 | 414..17 | 1990 | 100 | Minus |
CG45078-RA | 1925 | CG45078-RA | 1245..1566 | 338..17 | 1610 | 100 | Minus |
CG45078-RA | 1925 | CG45078-RA | 122..199 | 414..337 | 390 | 100 | Minus |
CG45076-RI | 2109 | CG45076-RI | 122..198 | 414..338 | 385 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:07:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10773698..10774019 | 17..338 | 1610 | 100 | Plus |
3R | 32079331 | 3R | 10777177..10777253 | 338..414 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 17:07:32 has no hits.
BS06149.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:25 Download gff for
BS06149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fau-PC | 1..396 | 17..412 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:31 Download gff for
BS06149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6544-PC | 1..396 | 17..412 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:35 Download gff for
BS06149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fau-RC | 116..522 | 14..422 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:23 Download gff for
BS06149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fau-RA | 116..522 | 14..422 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:23 Download gff for
BS06149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10773695..10774018 | 14..337 | 99 | <- | Plus |
3R | 10777177..10777259 | 338..422 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:35 Download gff for
BS06149.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6599417..6599740 | 14..337 | 99 | <- | Plus |
arm_3R | 6602899..6602981 | 338..422 | 96 | | Plus |
BS06149.5prime Sequence
426 bp (425 high quality bases) assembled on 2005-12-03
> BS06149.5prime
GAAGTTATCAGTCGACATGGTTTACGAAAGTGGATTTACGACCCGCAGAA
CCTACTCCTCGAGGCCGGTGACAACTTCCTACGCAGTTACGACTCCACGC
TTAGACCTGTGCACGGACAGACCGGGCTCGCACCGCAGCCGGGCCTCCTC
GGACTACTCGTACACCTCGAAGTCGTCCGTGGAGAAGAGCAGCTACGACT
CGAGCAACCCGCACTCGTACCGCCCGGAGCGCTCCACGTACACGTCGACT
GTGGAGAAGACGTCGCGCAGCGGTCCCGGCGGCTCGTACAACTACAGCAC
AGAGCGGACCAGCACCACTGGCGCCGGACCCGGTGGCTACAGCTATTCTT
CGACCACCAGCGGCAACCTGCCCGGCGGCACCAAGTACCGCCACTTCTCC
TACCACGTGTAGAAGCTTTCTAGACC
BS06149.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6544-PC | 396 | fau-RC | 1..396 | 17..412 | 1980 | 100 | Plus |
CG6544-PB | 492 | fau-RB | 1..76 | 17..92 | 380 | 100 | Plus |
CG6544-PD | 297 | fau-RD | 1..75 | 17..91 | 375 | 100 | Plus |
CG6544-PA | 1860 | fau-RA | 1..75 | 17..91 | 375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:07:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fau-RA | 1020 | CG45077-RA | 122..519 | 15..412 | 1990 | 100 | Plus |
CG45078-RA | 1925 | CG45078-RA | 1245..1566 | 91..412 | 1610 | 100 | Plus |
CG45078-RA | 1925 | CG45078-RA | 122..199 | 15..92 | 390 | 100 | Plus |
CG45076-RI | 2109 | CG45076-RI | 122..198 | 15..91 | 385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:07:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10773698..10774019 | 412..91 | 1610 | 100 | Minus |
3R | 32079331 | 3R | 10777177..10777253 | 91..15 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:07:09 has no hits.
BS06149.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:27 Download gff for
BS06149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fau-PC | 1..396 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:33 Download gff for
BS06149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6544-PC | 1..396 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 14:34:34 Download gff for
BS06149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fau-RC | 116..522 | 7..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:53:48 Download gff for
BS06149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fau-RA | 116..522 | 7..415 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:53:48 Download gff for
BS06149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10777177..10777259 | 7..91 | 96 | | Minus |
3R | 10773695..10774018 | 92..415 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 14:34:34 Download gff for
BS06149.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6599417..6599740 | 92..415 | 99 | <- | Minus |
arm_3R | 6602899..6602981 | 7..91 | 96 | | Minus |
BS06149.complete Sequence
428 bp assembled on 2007-10-17
GenBank Submission: FJ635373
> BS06149.complete
GAAGTTATCAGTCGACATGGTTTACGAAAGTGGATTTACGACCCGCAGAA
CCTACTCCTCGAGGCCGGTGACAACTTCCTACGCAGTTACGACTCCACGC
TTAGACCTGTGCACGGACAGACCGGGCTCGCACCGCAGCCGGGCCTCCTC
GGACTACTCGTACACCTCGAAGTCGTCCGTGGAGAAGAGCAGCTACGACT
CGAGCAACCCGCACTCGTACCGCCCGGAGCGCTCCACGTACACGTCGACT
GTGGAGAAGACGTCGCGCAGCGGTCCCGGCGGCTCGTACAACTACAGCAC
AGAGCGGACCAGCACCACTGGCGCCGGACCCGGTGGCTACAGCTATTCTT
CGACCACCAGCGGCAACCTGCCCGGCGGCACCAAGTACCGCCACTTCTCC
TACCACGTGTAGAAGCTTTCTAGACCAT
BS06149.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:10:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fau-RA | 396 | CG45077-PA | 1..396 | 17..412 | 1980 | 100 | Plus |
CG45078-RA | 492 | CG45078-PA | 1..76 | 17..92 | 380 | 100 | Plus |
CG45076-RI | 1032 | CG45076-PI | 1..75 | 17..91 | 375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fau-RA | 1020 | CG45077-RA | 122..519 | 15..412 | 1990 | 100 | Plus |
CG45078-RA | 1925 | CG45078-RA | 1245..1566 | 91..412 | 1610 | 100 | Plus |
CG45078-RA | 1925 | CG45078-RA | 122..199 | 15..92 | 390 | 100 | Plus |
CG45076-RI | 2109 | CG45076-RI | 122..198 | 15..91 | 385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 10773698..10774019 | 412..91 | 1610 | 100 | Minus |
3R | 32079331 | 3R | 10777177..10777253 | 91..15 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:10:40 has no hits.
BS06149.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 15:38:34 Download gff for
BS06149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fau-RC | 1..396 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:16:33 Download gff for
BS06149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fau-RC | 103..509 | 7..415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:44 Download gff for
BS06149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fau-RC | 124..519 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 16:49:47 Download gff for
BS06149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fau-RC | 111..506 | 17..412 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:10 Download gff for
BS06149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
fau-RA | 124..519 | 17..412 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:10 Download gff for
BS06149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 10773698..10774018 | 92..412 | 100 | <- | Minus |
3R | 10777177..10777251 | 17..91 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:44 Download gff for
BS06149.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 6599420..6599740 | 92..412 | 100 | <- | Minus |
arm_3R | 6602899..6602973 | 17..91 | 100 | | Minus |
BS06149.pep Sequence
Translation from 16 to 411
> BS06149.pep
MVYESGFTTRRTYSSRPVTTSYAVTTPRLDLCTDRPGSHRSRASSDYSYT
SKSSVEKSSYDSSNPHSYRPERSTYTSTVEKTSRSGPGGSYNYSTERTST
TGAGPGGYSYSSTTSGNLPGGTKYRHFSYHV*
BS06149.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 02:38:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
fau-PA | 131 | CG45077-PA | 1..131 | 1..131 | 695 | 100 | Plus |