Clone BS06152 Report

Search the DGRC for BS06152

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG9666-RA
Protein status:BS06152.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06152.3prime Sequence

672 bp (671 high quality bases) assembled on 2005-12-03

> BS06152.3prime
ATGGTCTAGAAAGCTTCTATTCCGTGCCGATTTCAAAGCGCCAGAAGTCC
ACCTCAATATCCTTCGACTTCTGCTTGTGAAACTTGTAGCTGGCGTCGAT
GTTGTACCGGAGTTCGGCGACCACTGAGCCGCGGGCGCCCCATTCCAGTG
CCTTTTTCTGAATGTACGACCGTGTTGACGTCTTGTGTAGGGAGTAAACT
GCTCTGTTGGCCAACCGTAGGGCCACCTCCAGAAACCGCATGTCCATGCC
GGCATTGTGTTTCGTGCCGAATGGGGGATTCATCAGCACCGTGTCAAAGG
ACTTCTCCCACTTGCTGCCGATCAGCTGCAGCACATCCGCCCGCACGCAG
TCAACATTGGGTAGCTCCATCTCCACCACATTGCCCCTAAAGGTGTCCAC
GGCATCGCCGTCCAGTTCGAAGCCCACCGTGAGCTGGGCGCCCAGCAGAG
TGGAAGCAATGCTGAGCATTCCGCAGCCGCAGCCCAAATCTCCCACCAGC
TTTCCCTCGATGTCCTCGTGCTGCGACTGCATGTGATGAGCCATGCACGC
GGCTATGTGCGGCGGAGTGGGGTACTGTTCCAACAGGATCTTGGGCTGCT
CGAAACCGTCAACGCCCTGCAGGTACTCCTCCAGTTTCCTCAGCTTCAAC
CGGGCCATGTCGACTGATAACT

BS06152.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG9666-PA 642 CG9666-RA 1..642 658..17 3210 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:41:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG42374-RB 1635 CG42374-RB 903..1544 658..17 3210 100 Minus
CG42374-RA 1227 CG42374-RA 495..1136 658..17 3210 100 Minus
CG9666-RD 1635 CG9666-RD 903..1544 658..17 3210 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:41:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19264956..19265445 658..169 2450 100 Minus
3L 28110227 3L 19266593..19266747 171..17 775 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:41:44 has no hits.

BS06152.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:32 Download gff for BS06152.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9666-PA 1..642 17..658 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:40 Download gff for BS06152.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9666-PA 1..642 17..658 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:27:51 Download gff for BS06152.3prime
Subject Subject Range Query Range Percent Splice Strand
CG42374-RA 489..1147 7..663 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:54:38 Download gff for BS06152.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9666-RD 897..1555 7..663 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:54:38 Download gff for BS06152.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19264950..19265443 171..663 99 -> Minus
3L 19266594..19266758 7..170 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:27:51 Download gff for BS06152.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19258050..19258543 171..663 99 -> Minus
arm_3L 19259694..19259858 7..170 97   Minus

BS06152.5prime Sequence

672 bp (671 high quality bases) assembled on 2005-12-03

> BS06152.5prime
GAAGTTATCAGTCGACATGGCCCGGTTGAAGCTGAGGAAACTGGAGGAGT
ACCTGCAGGGCGTTGACGGTTTCGAGCAGCCCAAGATCCTGTTGGAACAG
TACCCCACTCCGCCGCACATAGCCGCGTGCATGGCTCATCACATGCAGTC
GCAGCACGAGGACATCGAGGGAAAGCTGGTGGGAGATTTGGGCTGCGGCT
GCGGAATGCTCAGCATTGCTTCCACTCTGCTGGGCGCCCAGCTCACGGTG
GGCTTCGAACTGGACGGCGATGCCGTGGACACCTTTAGGGGCAATGTGGT
GGAGATGGAGCTACCCAATGTTGACTGCGTGCGGGCGGATGTGCTGCAGC
TGATCGGCAGCAAGTGGGAGAAGTCCTTTGACACGGTGCTGATGAATCCC
CCATTCGGCACGAAACACAATGCCGGCATGGACATGCGGTTTCTGGAGGT
GGCCCTACGGTTGGCCAACAGAGCAGTTTACTCCCTACACAAGACGTCAA
CACGGTCGTACATTCAGAAAAAGGCACTGGAATGGGGCGCCCGCGGCTCA
GTGGTCGCCGAACTCCGGTACAACATCGACGCCAGCTACAAGTTTCACAA
GCAGAAGTCGAAGGATATTGAGGTGGACTTCTGGCGCTTTGAAATCGGCA
CGGAATAGAAGCTTTCTAGACC

BS06152.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG9666-PA 642 CG9666-RA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG42374-RB 1635 CG42374-RB 903..1544 17..658 3210 100 Plus
CG42374-RA 1227 CG42374-RA 495..1136 17..658 3210 100 Plus
CG9666-RD 1635 CG9666-RD 903..1544 17..658 3210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19264956..19265445 17..506 2450 100 Plus
3L 28110227 3L 19266593..19266747 504..658 775 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:51:14 has no hits.

BS06152.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:33 Download gff for BS06152.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9666-PA 1..642 17..658 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:41 Download gff for BS06152.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9666-PA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:11:28 Download gff for BS06152.5prime
Subject Subject Range Query Range Percent Splice Strand
CG42374-RA 489..1147 12..668 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:13 Download gff for BS06152.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9666-RD 897..1555 12..668 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:13 Download gff for BS06152.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19264950..19265443 12..504 99 -> Plus
3L 19266594..19266758 505..668 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:11:28 Download gff for BS06152.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19258050..19258543 12..504 99 -> Plus
arm_3L 19259694..19259858 505..668 97   Plus

BS06152.complete Sequence

674 bp (674 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635376

> BS06152.complete
GAAGTTATCAGTCGACATGGCCCGGTTGAAGCTGAGGAAACTGGAGGAGT
ACCTGCAGGGCGTTGACGGTTTCGAGCAGCCCAAGATCCTGTTGGAACAG
TACCCCACTCCGCCGCACATAGCCGCGTGCATGGCTCATCACATGCAGTC
GCAGCACGAGGACATCGAGGGAAAGCTGGTGGGAGATTTGGGCTGCGGCT
GCGGAATGCTCAGCATTGCTTCCACTCTGCTGGGCGCCCAGCTCACGGTG
GGCTTCGAACTGGACGGCGATGCCGTGGACACCTTTAGGGGCAATGTGGT
GGAGATGGAGCTACCCAATGTTGACTGCGTGCGGGCGGATGTGCTGCAGC
TGATCGGCAGCAAGTGGGAGAAGTCCTTTGACACGGTGCTGATGAATCCC
CCATTCGGCACGAAACACAATGCCGGCATGGACATGCGGTTTCTGGAGGT
GGCCCTACGGTTGGCCAACAGAGCAGTTTACTCCCTACACAAGACGTCAA
CACGGTCGTACATTCAGAAAAAGGCACTGGAATGGGGCGCCCGCGGCTCA
GTGGTCGCCGAACTCCGGTACAACATCGACGCCAGCTACAAGTTTCACAA
GCAGAAGTCGAAGGATATTGAGGTGGACTTCTGGCGCTTTGAAATCGGCA
CGGAATAGAAGCTTTCTAGACCAT

BS06152.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG9666-RD 642 CG9666-PD 1..642 17..658 3210 100 Plus
CG9666-RA 642 CG9666-PA 1..642 17..658 3210 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG42374-RB 1635 CG42374-RB 903..1544 17..658 3210 100 Plus
CG42374-RA 1227 CG42374-RA 495..1136 17..658 3210 100 Plus
CG9666-RD 1635 CG9666-RD 903..1544 17..658 3210 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19264956..19265445 17..506 2450 100 Plus
3L 28110227 3L 19266593..19266747 504..658 775 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:32:08 has no hits.

BS06152.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:58 Download gff for BS06152.complete
Subject Subject Range Query Range Percent Splice Strand
CG9666-RA 1..642 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:49 Download gff for BS06152.complete
Subject Subject Range Query Range Percent Splice Strand
CG42374-RA 894..1552 12..668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:08 Download gff for BS06152.complete
Subject Subject Range Query Range Percent Splice Strand
CG42374-RA 495..1136 17..658 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:58 Download gff for BS06152.complete
Subject Subject Range Query Range Percent Splice Strand
CG9666-RA 894..1552 12..668 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:11 Download gff for BS06152.complete
Subject Subject Range Query Range Percent Splice Strand
CG9666-RD 903..1544 17..658 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:11 Download gff for BS06152.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19264956..19265443 17..504 100 -> Plus
3L 19266594..19266747 505..658 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:08 Download gff for BS06152.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19258056..19258543 17..504 100 -> Plus
arm_3L 19259694..19259847 505..658 100   Plus

BS06152.pep Sequence

Translation from 16 to 657

> BS06152.pep
MARLKLRKLEEYLQGVDGFEQPKILLEQYPTPPHIAACMAHHMQSQHEDI
EGKLVGDLGCGCGMLSIASTLLGAQLTVGFELDGDAVDTFRGNVVEMELP
NVDCVRADVLQLIGSKWEKSFDTVLMNPPFGTKHNAGMDMRFLEVALRLA
NRAVYSLHKTSTRSYIQKKALEWGARGSVVAELRYNIDASYKFHKQKSKD
IEVDFWRFEIGTE*

BS06152.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9666-PD 213 CG9666-PD 1..213 1..213 1117 100 Plus
CG9666-PA 213 CG9666-PA 1..213 1..213 1117 100 Plus