Clone Sequence Records
BS06152.3prime Sequence
672 bp (671 high quality bases) assembled on 2005-12-03
> BS06152.3prime
ATGGTCTAGAAAGCTTCTATTCCGTGCCGATTTCAAAGCGCCAGAAGTCC
ACCTCAATATCCTTCGACTTCTGCTTGTGAAACTTGTAGCTGGCGTCGAT
GTTGTACCGGAGTTCGGCGACCACTGAGCCGCGGGCGCCCCATTCCAGTG
CCTTTTTCTGAATGTACGACCGTGTTGACGTCTTGTGTAGGGAGTAAACT
GCTCTGTTGGCCAACCGTAGGGCCACCTCCAGAAACCGCATGTCCATGCC
GGCATTGTGTTTCGTGCCGAATGGGGGATTCATCAGCACCGTGTCAAAGG
ACTTCTCCCACTTGCTGCCGATCAGCTGCAGCACATCCGCCCGCACGCAG
TCAACATTGGGTAGCTCCATCTCCACCACATTGCCCCTAAAGGTGTCCAC
GGCATCGCCGTCCAGTTCGAAGCCCACCGTGAGCTGGGCGCCCAGCAGAG
TGGAAGCAATGCTGAGCATTCCGCAGCCGCAGCCCAAATCTCCCACCAGC
TTTCCCTCGATGTCCTCGTGCTGCGACTGCATGTGATGAGCCATGCACGC
GGCTATGTGCGGCGGAGTGGGGTACTGTTCCAACAGGATCTTGGGCTGCT
CGAAACCGTCAACGCCCTGCAGGTACTCCTCCAGTTTCCTCAGCTTCAAC
CGGGCCATGTCGACTGATAACT
BS06152.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9666-PA | 642 | CG9666-RA | 1..642 | 658..17 | 3210 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:41:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42374-RB | 1635 | CG42374-RB | 903..1544 | 658..17 | 3210 | 100 | Minus |
CG42374-RA | 1227 | CG42374-RA | 495..1136 | 658..17 | 3210 | 100 | Minus |
CG9666-RD | 1635 | CG9666-RD | 903..1544 | 658..17 | 3210 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:41:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19264956..19265445 | 658..169 | 2450 | 100 | Minus |
3L | 28110227 | 3L | 19266593..19266747 | 171..17 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:41:44 has no hits.
BS06152.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:32 Download gff for
BS06152.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9666-PA | 1..642 | 17..658 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:40 Download gff for
BS06152.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9666-PA | 1..642 | 17..658 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:27:51 Download gff for
BS06152.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42374-RA | 489..1147 | 7..663 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:54:38 Download gff for
BS06152.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9666-RD | 897..1555 | 7..663 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:54:38 Download gff for
BS06152.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19264950..19265443 | 171..663 | 99 | -> | Minus |
3L | 19266594..19266758 | 7..170 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:27:51 Download gff for
BS06152.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19258050..19258543 | 171..663 | 99 | -> | Minus |
arm_3L | 19259694..19259858 | 7..170 | 97 | | Minus |
BS06152.5prime Sequence
672 bp (671 high quality bases) assembled on 2005-12-03
> BS06152.5prime
GAAGTTATCAGTCGACATGGCCCGGTTGAAGCTGAGGAAACTGGAGGAGT
ACCTGCAGGGCGTTGACGGTTTCGAGCAGCCCAAGATCCTGTTGGAACAG
TACCCCACTCCGCCGCACATAGCCGCGTGCATGGCTCATCACATGCAGTC
GCAGCACGAGGACATCGAGGGAAAGCTGGTGGGAGATTTGGGCTGCGGCT
GCGGAATGCTCAGCATTGCTTCCACTCTGCTGGGCGCCCAGCTCACGGTG
GGCTTCGAACTGGACGGCGATGCCGTGGACACCTTTAGGGGCAATGTGGT
GGAGATGGAGCTACCCAATGTTGACTGCGTGCGGGCGGATGTGCTGCAGC
TGATCGGCAGCAAGTGGGAGAAGTCCTTTGACACGGTGCTGATGAATCCC
CCATTCGGCACGAAACACAATGCCGGCATGGACATGCGGTTTCTGGAGGT
GGCCCTACGGTTGGCCAACAGAGCAGTTTACTCCCTACACAAGACGTCAA
CACGGTCGTACATTCAGAAAAAGGCACTGGAATGGGGCGCCCGCGGCTCA
GTGGTCGCCGAACTCCGGTACAACATCGACGCCAGCTACAAGTTTCACAA
GCAGAAGTCGAAGGATATTGAGGTGGACTTCTGGCGCTTTGAAATCGGCA
CGGAATAGAAGCTTTCTAGACC
BS06152.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9666-PA | 642 | CG9666-RA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42374-RB | 1635 | CG42374-RB | 903..1544 | 17..658 | 3210 | 100 | Plus |
CG42374-RA | 1227 | CG42374-RA | 495..1136 | 17..658 | 3210 | 100 | Plus |
CG9666-RD | 1635 | CG9666-RD | 903..1544 | 17..658 | 3210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19264956..19265445 | 17..506 | 2450 | 100 | Plus |
3L | 28110227 | 3L | 19266593..19266747 | 504..658 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:51:14 has no hits.
BS06152.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:33 Download gff for
BS06152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9666-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:41 Download gff for
BS06152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9666-PA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:11:28 Download gff for
BS06152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42374-RA | 489..1147 | 12..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:13 Download gff for
BS06152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9666-RD | 897..1555 | 12..668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:13 Download gff for
BS06152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19264950..19265443 | 12..504 | 99 | -> | Plus |
3L | 19266594..19266758 | 505..668 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:11:28 Download gff for
BS06152.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19258050..19258543 | 12..504 | 99 | -> | Plus |
arm_3L | 19259694..19259858 | 505..668 | 97 | | Plus |
BS06152.complete Sequence
674 bp (674 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635376
> BS06152.complete
GAAGTTATCAGTCGACATGGCCCGGTTGAAGCTGAGGAAACTGGAGGAGT
ACCTGCAGGGCGTTGACGGTTTCGAGCAGCCCAAGATCCTGTTGGAACAG
TACCCCACTCCGCCGCACATAGCCGCGTGCATGGCTCATCACATGCAGTC
GCAGCACGAGGACATCGAGGGAAAGCTGGTGGGAGATTTGGGCTGCGGCT
GCGGAATGCTCAGCATTGCTTCCACTCTGCTGGGCGCCCAGCTCACGGTG
GGCTTCGAACTGGACGGCGATGCCGTGGACACCTTTAGGGGCAATGTGGT
GGAGATGGAGCTACCCAATGTTGACTGCGTGCGGGCGGATGTGCTGCAGC
TGATCGGCAGCAAGTGGGAGAAGTCCTTTGACACGGTGCTGATGAATCCC
CCATTCGGCACGAAACACAATGCCGGCATGGACATGCGGTTTCTGGAGGT
GGCCCTACGGTTGGCCAACAGAGCAGTTTACTCCCTACACAAGACGTCAA
CACGGTCGTACATTCAGAAAAAGGCACTGGAATGGGGCGCCCGCGGCTCA
GTGGTCGCCGAACTCCGGTACAACATCGACGCCAGCTACAAGTTTCACAA
GCAGAAGTCGAAGGATATTGAGGTGGACTTCTGGCGCTTTGAAATCGGCA
CGGAATAGAAGCTTTCTAGACCAT
BS06152.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:32:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9666-RD | 642 | CG9666-PD | 1..642 | 17..658 | 3210 | 100 | Plus |
CG9666-RA | 642 | CG9666-PA | 1..642 | 17..658 | 3210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:32:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG42374-RB | 1635 | CG42374-RB | 903..1544 | 17..658 | 3210 | 100 | Plus |
CG42374-RA | 1227 | CG42374-RA | 495..1136 | 17..658 | 3210 | 100 | Plus |
CG9666-RD | 1635 | CG9666-RD | 903..1544 | 17..658 | 3210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:32:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19264956..19265445 | 17..506 | 2450 | 100 | Plus |
3L | 28110227 | 3L | 19266593..19266747 | 504..658 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:32:08 has no hits.
BS06152.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:58 Download gff for
BS06152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9666-RA | 1..642 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:49 Download gff for
BS06152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42374-RA | 894..1552 | 12..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:54:08 Download gff for
BS06152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG42374-RA | 495..1136 | 17..658 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:58 Download gff for
BS06152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9666-RA | 894..1552 | 12..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:22:11 Download gff for
BS06152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9666-RD | 903..1544 | 17..658 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:22:11 Download gff for
BS06152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19264956..19265443 | 17..504 | 100 | -> | Plus |
3L | 19266594..19266747 | 505..658 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:54:08 Download gff for
BS06152.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19258056..19258543 | 17..504 | 100 | -> | Plus |
arm_3L | 19259694..19259847 | 505..658 | 100 | | Plus |
BS06152.pep Sequence
Translation from 16 to 657
> BS06152.pep
MARLKLRKLEEYLQGVDGFEQPKILLEQYPTPPHIAACMAHHMQSQHEDI
EGKLVGDLGCGCGMLSIASTLLGAQLTVGFELDGDAVDTFRGNVVEMELP
NVDCVRADVLQLIGSKWEKSFDTVLMNPPFGTKHNAGMDMRFLEVALRLA
NRAVYSLHKTSTRSYIQKKALEWGARGSVVAELRYNIDASYKFHKQKSKD
IEVDFWRFEIGTE*
BS06152.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:45:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9666-PD | 213 | CG9666-PD | 1..213 | 1..213 | 1117 | 100 | Plus |
CG9666-PA | 213 | CG9666-PA | 1..213 | 1..213 | 1117 | 100 | Plus |