Clone Sequence Records
BS06157.3prime Sequence
950 bp (806 high quality bases) assembled on 2005-12-03
> BS06157.3prime
ATGGTCTAGAAAGCTTCTACTTCTTCCGCAGCTCCTTGCAGAAGGTCTCG
GCAGCAGCAGCCTCGCGAGACACGGGCACATTTTTCTGAGCCTCATCCTC
CTCGAGTTTTTTGACACCCTGACGCACAACGCGTTCAATGTCGTCCAGCA
ATCCGGAGGCTCCGAAACGGAACCTCTCGGGACGCAACCAGCGGATGCCA
AGAGTTTCGTTGACCAACGTCATCCAGGCGATCGCATCTCGTACAGTCTT
TACTCCTCCGGCTGGCTTAAGGCCCACAATCTGGCACGTGCGTCGTTTGA
ATTCCTGAATGGCAAATATCATGACCAGGCCAACGGGCAGGGTGGCGTTG
ACTGTCTCCTTTCCCGTTGAGGTCTTGATAAAATCCGCTCCGGCCATCAT
GCAAACCATGGCTGCTTTGTAAACATTATCCATGGTGCCCAGCTCCCCGA
TGGCCAGAATTGTTTTTAGGTGAGCCCTTTGTCCACAGGCACTGCGCATA
AGGACCACCTCGTTGTACATGGCCTCCCAGTCGCCAACGAGGGCCAACTG
GCGATTGATCACAATGTCGATCTCTGTGGCTCCAGCAAGAATGGCGTGGC
TGATCTCCTGCAGGCGGGTCTGCAGGCCGTACTGGCCCGTGGGAAATCCC
GTGGCCACCGCTGCAATAGCCACCTTATCCAGTTTGTCGTACTGTTGGAT
AGCTAAATAGGCGTCCTTTACCCTGGCGGGATAAACGCAAACGGCGGCCG
TGTGCATCTCTGGGATGAGAGCCCGGTCGAAGAACTTGTCAAAGAACTGC
GGCTCGAAGGGATAGCAGGCGCGTAGGCATAGTCTCCGCACATTGGCAGC
CGTATCATCGCCCGCCAAGGTGGTAAGATCTGTCAGCATCAGAGCCCTCA
GCGCCCAGGCGATTTCGTTGGCTCCGGTGACATGGCATCGCTGGGACACC
BS06157.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8525-PA | 1044 | CG8525-RA | 111..1044 | 950..17 | 4670 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:55:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8525-RD | 1269 | CG8525-RD | 230..1163 | 950..17 | 4670 | 100 | Minus |
CG8525-RA | 1378 | CG8525-RA | 339..1272 | 950..17 | 4670 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:55:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12425874..12426401 | 950..423 | 2640 | 100 | Minus |
2R | 25286936 | 2R | 12426462..12426869 | 424..17 | 2040 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 21:55:27 has no hits.
BS06157.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:42 Download gff for
BS06157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-PA | 111..1044 | 17..950 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:53 Download gff for
BS06157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-PA | 111..1044 | 17..950 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:17:32 Download gff for
BS06157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-RA | 339..1275 | 14..950 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:54:12 Download gff for
BS06157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-RA | 339..1275 | 14..950 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:54:12 Download gff for
BS06157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12425874..12426399 | 425..950 | 100 | -> | Minus |
2R | 12426462..12426872 | 14..424 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:17:32 Download gff for
BS06157.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8313379..8313904 | 425..950 | 100 | -> | Minus |
arm_2R | 8313967..8314377 | 14..424 | 99 | | Minus |
BS06157.5prime Sequence
957 bp (769 high quality bases) assembled on 2005-12-03
> BS06157.5prime
GAAGTTATCAGTCGACATGAGCAGCATGGATGTGAAGGAATTGGAAGTAA
ACAAAACCCTGCCCTATGATCCCTCCCTGCTTAAGGTAAACATCTCGCTG
CGGCAGGTCGAGGAGATCGCTTTGACGGTGTCCCAGCGATGCCATGTCAC
CGGAGCCAACGAAATCGCCTGGGCGCTGAGGGCTCTGATGCTGACAGATC
TTACCACCTTGGCGGGCGATGATACGGCTGCCAATGTGCGGAGACTATGC
CTACGCGCCTGCTATCCCTTCGAGCCGCAGTTCTTTGACAAGTTCTTCGA
CCGGGCTCTCATCCCAGAGATGCACACGGCCGCCGTTTGCGTTTATCCCG
CCAGGGTAAAGGACGCCTATTTAGCTATCCAACAGTACGACAAACTGGAT
AAGGTGGCTATTGCAGCGGTGGCCACGGGATTTCCCACGGGCCAGTACGG
CCTGCAGACCCGCCTGCAGGAGATCAGCCACGCCATTCTTGCTGGAGCCA
CAGAGATCGACATTGTGATCAATCGCCAGTTGGCCCTCGTTGGCGACTGG
GAGGCCATGTACAACGAGGTGGTCCTTATGCGCAGTGCCTGTGGACAAAG
GGCTCACCTAAAAACAATTCTGGCCATCGGGGAGCTGGGCACCATGGATA
ATGTTTACAAAGCAGCCATGGTTTGCATGATGGCCGGAGCGGATTTTATC
AAGACCTCAACGGGAAAGGAGACAGTCAACGCCACCCTGCCCGTTGGCCT
GGTCATGATATTTGCCATTCANGAATTCAAACGACGCACGTGCCAGATTG
TGGGCCTTAAGCCAGCCGGAGGAGTAAAGACTGTACGAGATGCGATCGCC
TGGATGACGTTGGTCAACGAAACTCTTGGCATCCGCTGGTTGCGTCCCGA
GAGGTTCCGTTTCGGAGCCTCCCGAATGCTGGACGACATTGAAACGCGTG
TGCGTCA
BS06157.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8525-PA | 1044 | CG8525-RA | 1..927 | 17..943 | 4566 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:36:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8525-RD | 1269 | CG8525-RD | 120..1060 | 17..957 | 4619 | 99.5 | Plus |
CG8525-RA | 1378 | CG8525-RA | 229..1169 | 17..957 | 4619 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:36:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12425815..12426401 | 68..654 | 2935 | 100 | Plus |
2R | 25286936 | 2R | 12426462..12426752 | 653..943 | 1414 | 99 | Plus |
2R | 25286936 | 2R | 12425711..12425762 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 08:36:34 has no hits.
BS06157.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:43 Download gff for
BS06157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-PA | 1..940 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:54 Download gff for
BS06157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-PA | 1..940 | 17..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:18:23 Download gff for
BS06157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-RA | 224..1168 | 9..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:24:40 Download gff for
BS06157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-RA | 224..1168 | 9..956 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:24:40 Download gff for
BS06157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12425706..12425762 | 9..68 | 95 | -> | Plus |
2R | 12426462..12426765 | 653..956 | 98 | | Plus |
2R | 12425816..12426399 | 69..652 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:18:23 Download gff for
BS06157.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8313211..8313267 | 9..68 | 95 | -> | Plus |
arm_2R | 8313321..8313904 | 69..652 | 100 | -> | Plus |
arm_2R | 8313967..8314270 | 653..956 | 98 | | Plus |
BS06157.complete Sequence
1076 bp (1076 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635378
> BS06157.complete
GAAGTTATCAGTCGACATGAGCAGCATGGATGTGAAGGAATTGGAAGTAA
ACAAAACCCTGCCCTATGATCCCTCCCTGCTTAAGGTAAACATCTCGCTG
CGGCAGGTCGAGGAGATCGCTTTGACGGTGTCCCAGCGATGCCATGTCAC
CGGAGCCAACGAAATCGCCTGGGCGCTGAGGGCTCTGATGCTGACAGATC
TTACCACCTTGGCGGGCGATGATACGGCTGCCAATGTGCGGAGACTATGC
CTACGCGCCTGCTATCCCTTCGAGCCGCAGTTCTTTGACAAGTTCTTCGA
CCGGGCTCTCATCCCAGAGATGCACACGGCCGCCGTTTGCGTTTATCCCG
CCAGGGTAAAGGACGCCTATTTAGCTATCCAACAGTACGACAAACTGGAT
AAGGTGGCTATTGCAGCGGTGGCCACGGGATTTCCCACGGGCCAGTACGG
CCTGCAGACCCGCCTGCAGGAGATCAGCCACGCCATTCTTGCTGGAGCCA
CAGAGATCGACATTGTGATCAATCGCCAGTTGGCCCTCGTTGGCGACTGG
GAGGCCATGTACAACGAGGTGGTCCTTATGCGCAGTGCCTGTGGACAAAG
GGCTCACCTAAAAACAATTCTGGCCATCGGGGAGCTGGGCACCATGGATA
ATGTTTACAAAGCAGCCATGGTTTGCATGATGGCCGGAGCGGATTTTATC
AAGACCTCAACGGGAAAGGAGACAGTCAACGCCACCCTGCCCGTTGGCCT
GGTCATGATATTTGCCATTCAGGAATTCAAACGACGCACGTGCCAGATTG
TGGGCCTTAAGCCAGCCGGAGGAGTAAAGACTGTACGAGATGCGATCGCC
TGGATGACGTTGGTCAACGAAACTCTTGGCATCCGCTGGTTGCGTCCCGA
GAGGTTCCGTTTCGGAGCCTCCGGATTGCTGGACGACATTGAACGCGTTG
TGCGTCAGGGTGTCAAAAAACTCGAGGAGGATGAGGCTCAGAAAAATGTG
CCCGTGTCTCGCGAGGCTGCTGCTGCCGAGACCTTCTGCAAGGAGCTGCG
GAAGAAGTAGAAGCTTTCTAGACCAT
BS06157.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:53:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8525-RD | 1044 | CG8525-PD | 1..1044 | 17..1060 | 5220 | 100 | Plus |
CG8525-RA | 1044 | CG8525-PA | 1..1044 | 17..1060 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:53:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8525-RD | 1269 | CG8525-RD | 120..1163 | 17..1060 | 5220 | 100 | Plus |
CG8525-RA | 1378 | CG8525-RA | 229..1272 | 17..1060 | 5220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:53:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12425815..12426401 | 68..654 | 2935 | 100 | Plus |
2R | 25286936 | 2R | 12426462..12426869 | 653..1060 | 2040 | 100 | Plus |
2R | 25286936 | 2R | 12425711..12425762 | 17..68 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:53:08 has no hits.
BS06157.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:44 Download gff for
BS06157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-RA | 1..1044 | 17..1060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:29 Download gff for
BS06157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-RA | 249..1300 | 9..1063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:34:43 Download gff for
BS06157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-RA | 229..1272 | 17..1060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:44 Download gff for
BS06157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-RA | 249..1300 | 9..1063 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:28:51 Download gff for
BS06157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8525-RA | 229..1272 | 17..1060 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:28:51 Download gff for
BS06157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12425711..12425762 | 17..68 | 100 | -> | Plus |
2R | 12425816..12426399 | 69..652 | 100 | -> | Plus |
2R | 12426462..12426869 | 653..1060 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:34:43 Download gff for
BS06157.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8313216..8313267 | 17..68 | 100 | -> | Plus |
arm_2R | 8313321..8313904 | 69..652 | 100 | -> | Plus |
arm_2R | 8313967..8314374 | 653..1060 | 100 | | Plus |
BS06157.pep Sequence
Translation from 16 to 1059
> BS06157.pep
MSSMDVKELEVNKTLPYDPSLLKVNISLRQVEEIALTVSQRCHVTGANEI
AWALRALMLTDLTTLAGDDTAANVRRLCLRACYPFEPQFFDKFFDRALIP
EMHTAAVCVYPARVKDAYLAIQQYDKLDKVAIAAVATGFPTGQYGLQTRL
QEISHAILAGATEIDIVINRQLALVGDWEAMYNEVVLMRSACGQRAHLKT
ILAIGELGTMDNVYKAAMVCMMAGADFIKTSTGKETVNATLPVGLVMIFA
IQEFKRRTCQIVGLKPAGGVKTVRDAIAWMTLVNETLGIRWLRPERFRFG
ASGLLDDIERVVRQGVKKLEEDEAQKNVPVSREAAAAETFCKELRKK*
BS06157.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8525-PD | 347 | CG8525-PD | 1..347 | 1..347 | 1764 | 100 | Plus |
CG8525-PA | 347 | CG8525-PA | 1..347 | 1..347 | 1764 | 100 | Plus |