Clone Sequence Records
BS06158.3prime Sequence
862 bp (738 high quality bases) assembled on 2005-12-03
> BS06158.3prime
ATGGTCTAGAAAGCTTTCAAATGATGACTGCATATTGGTTTGAGTTACGC
GGTTGGATGAGCGTGGCATACTTCTCCTTCAGTTCGACCAAAGCCCTCTG
GAAGTTCTCCACGCTGCTCTCGAGCTGGTTGGGACTGAGCTGCTGGACGG
ACTGGCCCTTGAGTAGACCATCGGTGGGTCGCTCTCCCAGGAGGAGAATC
CTTCTCCAATCGCTGGCATCGGAGCTACCTCGCAGGAAGTCCTTGCGATT
GCCAACCGCAAACACAGTTTCCTCCATATTCTCGGGCAAAATTGTGGGCT
GCTGGGCTCCCAGATCGCCGGGCGTGGGTTGAGTTGGTGGCACTTGGACT
GCTGGTGGTGTGATCCCCGAGAGAGATGACGATGTGGGTTGCGGTGGAGG
AATGGGAGCACCGGAACCTTGGTTCACCGGTGTATCGAACAGTTCACTGG
GCAGATTCTGCGGTCGATCGATCTGCACCACCTGGCCATCGGGTGAAATG
TGGAAGAACTGAGCGCGACCAGCTAATCCCGTTCCTGGTCCTCCTGGAAT
CACTATAATGTTGCCCACAGCGGTGGTCAATGCAGAGGCTCCACCAAATC
CGCCACCACCTGGGGTGGAAATGAAAGGAGGGACTGGAACTCCCGGTGGC
GGAAAGGATCTCAAAGGTGGAGGAGCTGGGCATGGGAAACAATATCCAGG
AGGACCAGGCGGTCCTGGTAAGCCTCTAGGCCCCTGGATGAAAGGCAGAT
TTGGGGGGTAAGGACCTGTGGGTGGATAGCCCCAGTAGCCAGAACCACTG
CCAGAGAGACCGTTCTGATTGCCAGGAGGTCCAGGCGGACCTGGAGGTCC
TCGTTCCCCCTG
BS06158.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10591-PA | 939 | CG10591-RA | 94..939 | 862..17 | 4230 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:15:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10591-RA | 1075 | CG10591-RA | 129..975 | 862..16 | 4235 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:15:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5598657..5599503 | 16..862 | 4235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:15:37 has no hits.
BS06158.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:44 Download gff for
BS06158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10591-PA | 94..939 | 17..862 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:55 Download gff for
BS06158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10591-PA | 94..939 | 17..862 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:16:29 Download gff for
BS06158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10591-RA | 129..975 | 16..862 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:34:29 Download gff for
BS06158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10591-RA | 129..975 | 16..862 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:34:29 Download gff for
BS06158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5598657..5599503 | 16..862 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:16:29 Download gff for
BS06158.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5591757..5592603 | 16..862 | 100 | | Plus |
BS06158.5prime Sequence
763 bp (698 high quality bases) assembled on 2005-12-03
> BS06158.5prime
GAAGTTATCAGTCGACATGAGTTTTTTGGGACTCTTGGCTTTTCTGGTTG
CTGGTCTTTGCTCCACCGCCCAGGCTTCGTTGGTGAAATGCTCTTGTGAT
CCTGGTCCACAGGGGGAACGAGGACCTCCAGGTCCGCCTGGACCTCCTGG
CAATCAGAACGGTCTCTCTGGCAGTGGTTCTGGCTACTGGGGCTATCCAC
CCACAGGTCCTTACCCCCCAAATCTGCCTTTCATCCAGGGGCCTAGAGGC
TTACCAGGACCGCCTGGTCCTCCTGGATATTGTTTCCCATGCCCAGCTCC
TCCACCTTTGAGATCCTTTCCGCCACCGGGAGTTCCAGTCCCTCCTTTCA
TTTCCACCCCAGGTGGTGGCGGATTTGGTGGAGCCTCTGCATTGACCACC
GCTGTGGGCAACATTATAGTGATTCCAGGAGGACCAGGAACGGGATTAGC
TGGTCGCGCTCAGTTCTTCCACATTTCACCCGATGGCCAGGTGGTGCAGA
TCGATCGACCGCAGAATCTGCCCAGTGAACTGTTCGATACACCGGTGAAC
CAAGGTTCCGGTGCTCCCATTCCTCCACCGCAACCCACATCGTCATCTCT
CTCGGGGATCACACCACCAGCAGTCCAAGTGCCACCAACTCAACCCACGC
CCGGCGATCTGGGAGCCCAGCAGCCCACAATTTTGCCCGAGAATATGGAG
GAAACTGTGTTTGCGGTTGGCAATCGCAAGGACTTCCTGCGAGGTAGCTC
CGATGCCAGCGAT
BS06158.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10591-PA | 939 | CG10591-RA | 1..747 | 17..763 | 3735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:18:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10591-RA | 1075 | CG10591-RA | 35..782 | 16..763 | 3740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5598850..5599560 | 763..53 | 3555 | 100 | Minus |
3L | 28110227 | 3L | 5599619..5599658 | 55..16 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:18:16 has no hits.
BS06158.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:45 Download gff for
BS06158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10591-PA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:57 Download gff for
BS06158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10591-PA | 1..747 | 17..763 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:32:48 Download gff for
BS06158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10591-RA | 28..782 | 10..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:33 Download gff for
BS06158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10591-RA | 28..782 | 10..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:33 Download gff for
BS06158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5598850..5599559 | 54..763 | 100 | <- | Minus |
3L | 5599621..5599665 | 10..53 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:32:48 Download gff for
BS06158.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5591950..5592659 | 54..763 | 100 | <- | Minus |
arm_3L | 5592721..5592765 | 10..53 | 93 | | Minus |
BS06158.complete Sequence
971 bp (971 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635379
> BS06158.complete
GAAGTTATCAGTCGACATGAGTTTTTTGGGACTCTTGGCTTTTCTGGTTG
CTGGTCTTTGCTCCACCGCCCAGGCTTCGTTGGTGAAATGCTCTTGTGAT
CCTGGTCCACAGGGGGAACGAGGACCTCCAGGTCCGCCTGGACCTCCTGG
CAATCAGAACGGTCTCTCTGGCAGTGGTTCTGGCTACTGGGGCTATCCAC
CCACAGGTCCTTACCCCCCAAATCTGCCTTTCATCCAGGGGCCTAGAGGC
TTACCAGGACCGCCTGGTCCTCCTGGATATTGTTTCCCATGCCCAGCTCC
TCCACCTTTGAGATCCTTTCCGCCACCGGGAGTTCCAGTCCCTCCTTTCA
TTTCCACCCCAGGTGGTGGCGGATTTGGTGGAGCCTCTGCATTGACCACC
GCTGTGGGCAACATTATAGTGATTCCAGGAGGACCAGGAACGGGATTAGC
TGGTCGCGCTCAGTTCTTCCACATTTCACCCGATGGCCAGGTGGTGCAGA
TCGATCGACCGCAGAATCTGCCCAGTGAACTGTTCGATACACCGGTGAAC
CAAGGTTCCGGTGCTCCCATTCCTCCACCGCAACCCACATCGTCATCTCT
CTCGGGGATCACACCACCAGCAGTCCAAGTGCCACCAACTCAACCCACGC
CCGGCGATCTGGGAGCCCAGCAGCCCACAATTTTGCCCGAGAATATGGAG
GAAACTGTGTTTGCGGTTGGCAATCGCAAGGACTTCCTGCGAGGTAGCTC
CGATGCCAGCGATTGGAGAAGGATTCTCCTCCTGGGAGAGCGACCCACCG
ATGGTCTACTCAAGGGCCAGTCCGTCCAGCAGCTCAGTCCCAACCAGCTC
GAGAGCAGCGTGGAGAACTTCCAGAGGGCTTTGGTCGAACTGAAGGAGAA
GTATGCCACGCTCATCCAACCGCGTAACTCAAACCAATATGCAGTCATCA
TTTGAAAGCTTTCTAGACCAT
BS06158.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:50:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10591-RA | 939 | CG10591-PA | 1..939 | 17..955 | 4695 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:50:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10591-RA | 1075 | CG10591-RA | 35..975 | 16..956 | 4705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:50:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5598657..5599560 | 956..53 | 4520 | 100 | Minus |
3L | 28110227 | 3L | 5599619..5599658 | 55..16 | 200 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:50:30 has no hits.
BS06158.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:45 Download gff for
BS06158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10591-RA | 1..939 | 17..955 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:31 Download gff for
BS06158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10591-RA | 25..972 | 10..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:59:14 Download gff for
BS06158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10591-RA | 36..973 | 17..954 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:46 Download gff for
BS06158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10591-RA | 25..972 | 10..956 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:28:19 Download gff for
BS06158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10591-RA | 36..973 | 17..954 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:28:19 Download gff for
BS06158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5598659..5599559 | 54..954 | 100 | <- | Minus |
3L | 5599621..5599657 | 17..53 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:59:14 Download gff for
BS06158.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5591759..5592659 | 54..954 | 100 | <- | Minus |
arm_3L | 5592721..5592757 | 17..53 | 100 | | Minus |
BS06158.pep Sequence
Translation from 16 to 954
> BS06158.pep
MSFLGLLAFLVAGLCSTAQASLVKCSCDPGPQGERGPPGPPGPPGNQNGL
SGSGSGYWGYPPTGPYPPNLPFIQGPRGLPGPPGPPGYCFPCPAPPPLRS
FPPPGVPVPPFISTPGGGGFGGASALTTAVGNIIVIPGGPGTGLAGRAQF
FHISPDGQVVQIDRPQNLPSELFDTPVNQGSGAPIPPPQPTSSSLSGITP
PAVQVPPTQPTPGDLGAQQPTILPENMEETVFAVGNRKDFLRGSSDASDW
RRILLLGERPTDGLLKGQSVQQLSPNQLESSVENFQRALVELKEKYATLI
QPRNSNQYAVII*
BS06158.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10591-PA | 312 | CG10591-PA | 1..312 | 1..312 | 1690 | 100 | Plus |
CG10625-PJ | 752 | CG10625-PJ | 131..300 | 30..222 | 200 | 32 | Plus |
CG10625-PI | 766 | CG10625-PI | 131..300 | 30..222 | 200 | 32 | Plus |
CG10625-PH | 1180 | CG10625-PH | 545..714 | 30..222 | 200 | 32 | Plus |
CG10625-PD | 268 | CG10625-PD | 134..222 | 30..116 | 184 | 48.3 | Plus |
CG10625-PJ | 752 | CG10625-PJ | 159..373 | 29..232 | 174 | 31.3 | Plus |
CG10625-PI | 766 | CG10625-PI | 159..373 | 29..232 | 174 | 31.3 | Plus |
CG10625-PH | 1180 | CG10625-PH | 573..787 | 29..232 | 174 | 31.3 | Plus |
CG10625-PJ | 752 | CG10625-PJ | 83..260 | 32..220 | 154 | 33.8 | Plus |
CG10625-PI | 766 | CG10625-PI | 83..260 | 32..220 | 154 | 33.8 | Plus |