Clone BS06159 Report

Search the DGRC for BS06159

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:59
Vector:pDNR-Dual
Associated Gene/TranscriptCG4365-RA
Protein status:BS06159.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06159.3prime Sequence

900 bp (842 high quality bases) assembled on 2005-12-03

> BS06159.3prime
ATGGTCTAGAAAGCTTTCAGGCTTTGAAGGTGTCCTTTTCCTTGCGCAGC
TTGCCCATGGTGACGACGGGATCGGTGGCTCCGCCAGCGTGCTTCTGCAC
GGTGGCTTCGTGAACGCGCATAAAGGGGTTCCAGGACTTCTCCTCGCCAA
TGGTGGAGGGCACAGTGGGATCCTGGGAGGCGCGCCGGTGCTTGGCCCAC
TCGATCCTCTGCTGGATGACCTCGTTGTCGGGCTCGACGTGACGGGCGAA
GCTCATGTTCTGCAGCGTGTACTCGTGGCCACAGAACACCTTTGTGGCGT
CCGGCAAGGCGGAGAGCTTTGTGCACAGCGCCTCGTACATTTCCTCGGGA
GTGCCCTCGAAGAAGCGGCCGCATCCGCCCTGGAAGAGGGTGTCGCCGGT
GAAGACGGCTCCCTCGCCGCTGCCCTGCTGCGCGGTGATGTGGTAGCAGA
TGTGGCCGGTAGTGTGGCACGGCGTGGACAAGCACTTGACATGCAGACCA
CCAATGGTGAAGGTGTCGTCCTGCTGAACCTTTTTGTTCAATGCCCCGAT
GCGGTCATCGCCGCCATACACGTCCAGCTCCTTCTCCCACAGCTTGAGCA
GCTTTTCATTGCCACCGGCGTGGTCCCAGTGATGGTGCGTGGTCAGCACC
TTGCTGAGGGTCAGCTGCTGCTCCTGCACCGTCTTAATGACCAGCTCCGG
CTCCACGGGATCCACCACGGCCGCCTCGCGCGTCTTCGTGTCTACAATCA
GATACATATAGTTATCCTGCAGGGCCGGCAGGATCTTGATCTCCATGCCC
TCCAGCTGCACGTCCTCCAATGTGCTGTGCATGCCTCTGAAGCCGACTTT
TTCGTAGTTTTGCACTCGGAAGTAGGTGGCCGTCAACTGGGTCTCCACGG

BS06159.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4365-PA 918 CG4365-RA 84..918 851..17 4175 100 Minus
CG4365-PC 1047 CG4365-RC 213..1047 851..17 4175 100 Minus
CG4365-PB 816 CG4365-RB 1..816 832..17 4080 100 Minus
CG4365-PA 918 CG4365-RA 35..77 900..858 215 100 Minus
CG4365-PC 1047 CG4365-RC 35..70 900..865 180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4365-RA 1092 CG4365-RA 118..1001 900..17 4375 99.8 Minus
CG4365-RC 1231 CG4365-RC 312..1155 861..17 4200 99.9 Minus
CG4365-RB 1013 CG4365-RB 79..922 861..17 4200 99.9 Minus
CG4365-RC 1231 CG4365-RC 143..178 900..865 180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:23:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20799156..20799990 851..17 4175 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:23:10 has no hits.

BS06159.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:46 Download gff for BS06159.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4365-PC 35..70 865..900 100   Minus
CG4365-PC 199..1047 17..864 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:58 Download gff for BS06159.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4365-PC 35..70 865..900 100 -> Minus
CG4365-PC 199..1047 17..864 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:50:27 Download gff for BS06159.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 118..1009 9..900 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:30 Download gff for BS06159.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 118..1009 9..900 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:30 Download gff for BS06159.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 20798824..20798859 865..900 100 -> Minus
3L 20799143..20799998 9..864 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:50:27 Download gff for BS06159.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20791924..20791959 865..900 100 -> Minus
arm_3L 20792243..20793098 9..864 99   Minus

BS06159.5prime Sequence

931 bp (805 high quality bases) assembled on 2005-12-03

> BS06159.5prime
GAAGTTATCAGTCGACATGTTGGCCTCCGCCTGGCGCAGCGTGGCCACCT
CCGTGGAGACCCAGTTGACGGCCACCTACTTCCGAGTGCAAAAACTACGA
AAAGTCGGCTTCAGAGGCATGCACAGCACATTGGAGGACGTGCAGCTGGA
GGGCATGGAGATCAAGATCCTGCCGGCCCTGCAGGATAACTATATGTATC
TGATTGTAGACACGAAGACGCGCGAGGCGGCCGTGGTGGATCCCGTGGAG
CCGGAGCTGGTCATTAAGACGGTGCAGGAGCAGCAGCTGACCCTCAGCAA
GGTGCTGACCACGCACCATCACTGGGACCACGCCGGTGGCAATGAAAAGC
TGCTCAAGCTGTGGGAGAAGGAGCTGGACGTGTATGGCGGCGATGACCGC
ATCGGGGCATTGAACAAAAAGGTTCAGCAGGACGACACCTTCACCATTGG
TGGTCTGCATGTCAAGTGCTTGTCCACGCCGTGCCACACTACCGGCCACA
TCTGCTACCACATCACCGCGCAGCAGGGCAGCGGCGAGGGAGCCGTCTTC
ACCGGCGACACCCTCTTCCAGGGCGGATGCGGCCGCTTCTTCGAGGGCAC
TCCCGAGGAAATGTACGAGGCGCTGTGCACAAAGCTCTCCGCCTTGCCGG
ACGCCACAAAGGTGTTCTGTGGCCACGAGTACACGCTGCAGAACATGAGC
TTCGCCCGTCACGTCGAGCCCGACAACGAGGTCATCCAGCAGAGGATCGA
GTGGGCCAAGCACCGGCGCGCCTCCCAGGATCCCACTGTGCCCTCCACCA
TTGGCGAGGAGAAGTCCTGAACCCCTTTATGCGCGTTCACGAAGCCACCG
TGCAGAAGCACGCTGGCGGAGCCACCGATCCCGTCGTCACCATGGGCAAG
CTGCGCAAGGGAAAAGACACCTTCAAAGCCT

BS06159.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4365-PA 918 CG4365-RA 1..803 17..819 4015 100 Plus
CG4365-PC 1047 CG4365-RC 200..932 87..819 3665 100 Plus
CG4365-PB 816 CG4365-RB 1..701 119..819 3505 100 Plus
CG4365-PA 918 CG4365-RA 804..916 819..931 515 98.2 Plus
CG4365-PC 1047 CG4365-RC 933..1045 819..931 515 98.2 Plus
CG4365-PB 816 CG4365-RB 702..814 819..931 515 98.2 Plus
CG4365-PC 1047 CG4365-RC 1..70 17..86 350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4365-RA 1092 CG4365-RA 84..999 17..931 4525 99.7 Plus
CG4365-RC 1231 CG4365-RC 308..1153 87..931 4175 99.6 Plus
CG4365-RB 1013 CG4365-RB 75..920 87..931 4175 99.6 Plus
CG4365-RC 1231 CG4365-RC 109..178 17..86 350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20799141..20799988 85..931 4160 99.6 Plus
3L 28110227 3L 20798790..20798859 17..86 350 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:59:44 has no hits.

BS06159.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:47 Download gff for BS06159.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4365-PA 1..916 17..931 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:59 Download gff for BS06159.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4365-PA 1..916 17..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:53:44 Download gff for BS06159.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 78..999 6..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:45:43 Download gff for BS06159.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 78..999 6..931 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:45:43 Download gff for BS06159.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 20798784..20798859 6..86 93 -> Plus
3L 20799143..20799988 87..931 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:53:44 Download gff for BS06159.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20791884..20791959 6..86 93 -> Plus
arm_3L 20792243..20793088 87..931 99   Plus

BS06159.complete Sequence

950 bp (950 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635380

> BS06159.complete
GAAGTTATCAGTCGACATGTTGGCCTCCGCCTGGCGCAGCGTGGCCACCT
CCGTGGAGACCCAGTTGACGGCCACCTACTTCCGAGTGCAAAAACTACGA
AAAGTCGGCTTCAGAGGCATGCACAGCACATTGGAGGACGTGCAGCTGGA
GGGCATGGAGATCAAGATCCTGCCGGCCCTGCAGGATAACTATATGTATC
TGATTGTAGACACGAAGACGCGCGAGGCGGCCGTGGTGGATCCCGTGGAG
CCGGAGCTGGTCATTAAGACGGTGCAGGAGCAGCAGCTGACCCTCAGCAA
GGTGCTGACCACGCACCATCACTGGGACCACGCCGGTGGCAATGAAAAGC
TGCTCAAGCTGTGGGAGAAGGAGCTGGACGTGTATGGCGGCGATGACCGC
ATCGGGGCATTGAACAAAAAGGTTCAGCAGGACGACACCTTCACCATTGG
TGGTCTGCATGTCAAGTGCTTGTCCACGCCGTGCCACACTACCGGCCACA
TCTGCTACCACATCACCGCGCAGCAGGGCAGCGGCGAGGGAGCCGTCTTC
ACCGGCGACACCCTCTTCCAGGGCGGATGCGGCCGCTTCTTCGAGGGCAC
TCCCGAGGAAATGTACGAGGCGCTGTGCACAAAGCTCTCCGCCTTGCCGG
ACGCCACAAAGGTGTTCTGTGGCCACGAGTACACGCTGCAGAACATGAGC
TTCGCCCGTCACGTCGAGCCCGACAACGAGGTCATCCAGCAGAGGATCGA
GTGGGCCAAGCACCGGCGCGCCTCCCAGGATCCCACTGTGCCCTCCACCA
TTGGCGAGGAGAAGTCCTGGAACCCCTTTATGCGCGTTCACGAAGCCACC
GTGCAGAAGCACGCTGGCGGAGCCACCGATCCCGTCGTCACCATGGGCAA
GCTGCGCAAGGAAAAGGACACCTTCAAAGCCTGAAAGCTTTCTAGACCAT

BS06159.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:18:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4365-RA 918 CG4365-PA 1..918 17..934 4590 100 Plus
CG4365-RC 1047 CG4365-PC 200..1047 87..934 4240 100 Plus
CG4365-RB 816 CG4365-PB 1..816 119..934 4080 100 Plus
CG4365-RC 1047 CG4365-PC 1..70 17..86 350 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG4365-RA 1092 CG4365-RA 84..1001 17..934 4590 100 Plus
CG4365-RC 1231 CG4365-RC 308..1155 87..934 4240 100 Plus
CG4365-RB 1013 CG4365-RB 75..922 87..934 4240 100 Plus
CG4365-RC 1231 CG4365-RC 109..178 17..86 350 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 20799141..20799990 85..934 4250 100 Plus
3L 28110227 3L 20798790..20798859 17..86 350 100 Plus
Blast to na_te.dros performed on 2014-11-26 16:18:46 has no hits.

BS06159.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:47 Download gff for BS06159.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 1..918 17..934 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:32 Download gff for BS06159.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 78..1009 6..942 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:40 Download gff for BS06159.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 89..1000 22..933 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:47 Download gff for BS06159.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 78..1009 6..942 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:09 Download gff for BS06159.complete
Subject Subject Range Query Range Percent Splice Strand
CG4365-RA 89..1000 22..933 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:09 Download gff for BS06159.complete
Subject Subject Range Query Range Percent Splice Strand
3L 20798795..20798859 22..86 100 -> Plus
3L 20799143..20799989 87..933 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:40 Download gff for BS06159.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 20791895..20791959 22..86 100 -> Plus
arm_3L 20792243..20793089 87..933 100   Plus

BS06159.pep Sequence

Translation from 16 to 933

> BS06159.pep
MLASAWRSVATSVETQLTATYFRVQKLRKVGFRGMHSTLEDVQLEGMEIK
ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEQQLTLSKVLTTH
HHWDHAGGNEKLLKLWEKELDVYGGDDRIGALNKKVQQDDTFTIGGLHVK
CLSTPCHTTGHICYHITAQQGSGEGAVFTGDTLFQGGCGRFFEGTPEEMY
EALCTKLSALPDATKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKHR
RASQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPVVTMGKLRKEK
DTFKA*

BS06159.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4365-PA 305 CG4365-PA 1..305 1..305 1621 100 Plus
CG4365-PC 348 CG4365-PC 1..348 1..305 1564 87.4 Plus
CG4365-PB 271 CG4365-PB 1..271 35..305 1453 100 Plus
CG30022-PB 279 CG30022-PB 61..221 59..222 209 32.1 Plus