Clone Sequence Records
BS06159.3prime Sequence
900 bp (842 high quality bases) assembled on 2005-12-03
> BS06159.3prime
ATGGTCTAGAAAGCTTTCAGGCTTTGAAGGTGTCCTTTTCCTTGCGCAGC
TTGCCCATGGTGACGACGGGATCGGTGGCTCCGCCAGCGTGCTTCTGCAC
GGTGGCTTCGTGAACGCGCATAAAGGGGTTCCAGGACTTCTCCTCGCCAA
TGGTGGAGGGCACAGTGGGATCCTGGGAGGCGCGCCGGTGCTTGGCCCAC
TCGATCCTCTGCTGGATGACCTCGTTGTCGGGCTCGACGTGACGGGCGAA
GCTCATGTTCTGCAGCGTGTACTCGTGGCCACAGAACACCTTTGTGGCGT
CCGGCAAGGCGGAGAGCTTTGTGCACAGCGCCTCGTACATTTCCTCGGGA
GTGCCCTCGAAGAAGCGGCCGCATCCGCCCTGGAAGAGGGTGTCGCCGGT
GAAGACGGCTCCCTCGCCGCTGCCCTGCTGCGCGGTGATGTGGTAGCAGA
TGTGGCCGGTAGTGTGGCACGGCGTGGACAAGCACTTGACATGCAGACCA
CCAATGGTGAAGGTGTCGTCCTGCTGAACCTTTTTGTTCAATGCCCCGAT
GCGGTCATCGCCGCCATACACGTCCAGCTCCTTCTCCCACAGCTTGAGCA
GCTTTTCATTGCCACCGGCGTGGTCCCAGTGATGGTGCGTGGTCAGCACC
TTGCTGAGGGTCAGCTGCTGCTCCTGCACCGTCTTAATGACCAGCTCCGG
CTCCACGGGATCCACCACGGCCGCCTCGCGCGTCTTCGTGTCTACAATCA
GATACATATAGTTATCCTGCAGGGCCGGCAGGATCTTGATCTCCATGCCC
TCCAGCTGCACGTCCTCCAATGTGCTGTGCATGCCTCTGAAGCCGACTTT
TTCGTAGTTTTGCACTCGGAAGTAGGTGGCCGTCAACTGGGTCTCCACGG
BS06159.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4365-PA | 918 | CG4365-RA | 84..918 | 851..17 | 4175 | 100 | Minus |
CG4365-PC | 1047 | CG4365-RC | 213..1047 | 851..17 | 4175 | 100 | Minus |
CG4365-PB | 816 | CG4365-RB | 1..816 | 832..17 | 4080 | 100 | Minus |
CG4365-PA | 918 | CG4365-RA | 35..77 | 900..858 | 215 | 100 | Minus |
CG4365-PC | 1047 | CG4365-RC | 35..70 | 900..865 | 180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:23:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4365-RA | 1092 | CG4365-RA | 118..1001 | 900..17 | 4375 | 99.8 | Minus |
CG4365-RC | 1231 | CG4365-RC | 312..1155 | 861..17 | 4200 | 99.9 | Minus |
CG4365-RB | 1013 | CG4365-RB | 79..922 | 861..17 | 4200 | 99.9 | Minus |
CG4365-RC | 1231 | CG4365-RC | 143..178 | 900..865 | 180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:23:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20799156..20799990 | 851..17 | 4175 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:23:10 has no hits.
BS06159.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:46 Download gff for
BS06159.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-PC | 35..70 | 865..900 | 100 | | Minus |
CG4365-PC | 199..1047 | 17..864 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:58 Download gff for
BS06159.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-PC | 35..70 | 865..900 | 100 | -> | Minus |
CG4365-PC | 199..1047 | 17..864 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:50:27 Download gff for
BS06159.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-RA | 118..1009 | 9..900 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:30 Download gff for
BS06159.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-RA | 118..1009 | 9..900 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:30 Download gff for
BS06159.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20798824..20798859 | 865..900 | 100 | -> | Minus |
3L | 20799143..20799998 | 9..864 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:50:27 Download gff for
BS06159.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20791924..20791959 | 865..900 | 100 | -> | Minus |
arm_3L | 20792243..20793098 | 9..864 | 99 | | Minus |
BS06159.5prime Sequence
931 bp (805 high quality bases) assembled on 2005-12-03
> BS06159.5prime
GAAGTTATCAGTCGACATGTTGGCCTCCGCCTGGCGCAGCGTGGCCACCT
CCGTGGAGACCCAGTTGACGGCCACCTACTTCCGAGTGCAAAAACTACGA
AAAGTCGGCTTCAGAGGCATGCACAGCACATTGGAGGACGTGCAGCTGGA
GGGCATGGAGATCAAGATCCTGCCGGCCCTGCAGGATAACTATATGTATC
TGATTGTAGACACGAAGACGCGCGAGGCGGCCGTGGTGGATCCCGTGGAG
CCGGAGCTGGTCATTAAGACGGTGCAGGAGCAGCAGCTGACCCTCAGCAA
GGTGCTGACCACGCACCATCACTGGGACCACGCCGGTGGCAATGAAAAGC
TGCTCAAGCTGTGGGAGAAGGAGCTGGACGTGTATGGCGGCGATGACCGC
ATCGGGGCATTGAACAAAAAGGTTCAGCAGGACGACACCTTCACCATTGG
TGGTCTGCATGTCAAGTGCTTGTCCACGCCGTGCCACACTACCGGCCACA
TCTGCTACCACATCACCGCGCAGCAGGGCAGCGGCGAGGGAGCCGTCTTC
ACCGGCGACACCCTCTTCCAGGGCGGATGCGGCCGCTTCTTCGAGGGCAC
TCCCGAGGAAATGTACGAGGCGCTGTGCACAAAGCTCTCCGCCTTGCCGG
ACGCCACAAAGGTGTTCTGTGGCCACGAGTACACGCTGCAGAACATGAGC
TTCGCCCGTCACGTCGAGCCCGACAACGAGGTCATCCAGCAGAGGATCGA
GTGGGCCAAGCACCGGCGCGCCTCCCAGGATCCCACTGTGCCCTCCACCA
TTGGCGAGGAGAAGTCCTGAACCCCTTTATGCGCGTTCACGAAGCCACCG
TGCAGAAGCACGCTGGCGGAGCCACCGATCCCGTCGTCACCATGGGCAAG
CTGCGCAAGGGAAAAGACACCTTCAAAGCCT
BS06159.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4365-PA | 918 | CG4365-RA | 1..803 | 17..819 | 4015 | 100 | Plus |
CG4365-PC | 1047 | CG4365-RC | 200..932 | 87..819 | 3665 | 100 | Plus |
CG4365-PB | 816 | CG4365-RB | 1..701 | 119..819 | 3505 | 100 | Plus |
CG4365-PA | 918 | CG4365-RA | 804..916 | 819..931 | 515 | 98.2 | Plus |
CG4365-PC | 1047 | CG4365-RC | 933..1045 | 819..931 | 515 | 98.2 | Plus |
CG4365-PB | 816 | CG4365-RB | 702..814 | 819..931 | 515 | 98.2 | Plus |
CG4365-PC | 1047 | CG4365-RC | 1..70 | 17..86 | 350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:59:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4365-RA | 1092 | CG4365-RA | 84..999 | 17..931 | 4525 | 99.7 | Plus |
CG4365-RC | 1231 | CG4365-RC | 308..1153 | 87..931 | 4175 | 99.6 | Plus |
CG4365-RB | 1013 | CG4365-RB | 75..920 | 87..931 | 4175 | 99.6 | Plus |
CG4365-RC | 1231 | CG4365-RC | 109..178 | 17..86 | 350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:59:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20799141..20799988 | 85..931 | 4160 | 99.6 | Plus |
3L | 28110227 | 3L | 20798790..20798859 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:59:44 has no hits.
BS06159.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:47 Download gff for
BS06159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-PA | 1..916 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:08:59 Download gff for
BS06159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-PA | 1..916 | 17..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:53:44 Download gff for
BS06159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-RA | 78..999 | 6..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:45:43 Download gff for
BS06159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-RA | 78..999 | 6..931 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:45:43 Download gff for
BS06159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20798784..20798859 | 6..86 | 93 | -> | Plus |
3L | 20799143..20799988 | 87..931 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:53:44 Download gff for
BS06159.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20791884..20791959 | 6..86 | 93 | -> | Plus |
arm_3L | 20792243..20793088 | 87..931 | 99 | | Plus |
BS06159.complete Sequence
950 bp (950 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635380
> BS06159.complete
GAAGTTATCAGTCGACATGTTGGCCTCCGCCTGGCGCAGCGTGGCCACCT
CCGTGGAGACCCAGTTGACGGCCACCTACTTCCGAGTGCAAAAACTACGA
AAAGTCGGCTTCAGAGGCATGCACAGCACATTGGAGGACGTGCAGCTGGA
GGGCATGGAGATCAAGATCCTGCCGGCCCTGCAGGATAACTATATGTATC
TGATTGTAGACACGAAGACGCGCGAGGCGGCCGTGGTGGATCCCGTGGAG
CCGGAGCTGGTCATTAAGACGGTGCAGGAGCAGCAGCTGACCCTCAGCAA
GGTGCTGACCACGCACCATCACTGGGACCACGCCGGTGGCAATGAAAAGC
TGCTCAAGCTGTGGGAGAAGGAGCTGGACGTGTATGGCGGCGATGACCGC
ATCGGGGCATTGAACAAAAAGGTTCAGCAGGACGACACCTTCACCATTGG
TGGTCTGCATGTCAAGTGCTTGTCCACGCCGTGCCACACTACCGGCCACA
TCTGCTACCACATCACCGCGCAGCAGGGCAGCGGCGAGGGAGCCGTCTTC
ACCGGCGACACCCTCTTCCAGGGCGGATGCGGCCGCTTCTTCGAGGGCAC
TCCCGAGGAAATGTACGAGGCGCTGTGCACAAAGCTCTCCGCCTTGCCGG
ACGCCACAAAGGTGTTCTGTGGCCACGAGTACACGCTGCAGAACATGAGC
TTCGCCCGTCACGTCGAGCCCGACAACGAGGTCATCCAGCAGAGGATCGA
GTGGGCCAAGCACCGGCGCGCCTCCCAGGATCCCACTGTGCCCTCCACCA
TTGGCGAGGAGAAGTCCTGGAACCCCTTTATGCGCGTTCACGAAGCCACC
GTGCAGAAGCACGCTGGCGGAGCCACCGATCCCGTCGTCACCATGGGCAA
GCTGCGCAAGGAAAAGGACACCTTCAAAGCCTGAAAGCTTTCTAGACCAT
BS06159.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:18:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4365-RA | 918 | CG4365-PA | 1..918 | 17..934 | 4590 | 100 | Plus |
CG4365-RC | 1047 | CG4365-PC | 200..1047 | 87..934 | 4240 | 100 | Plus |
CG4365-RB | 816 | CG4365-PB | 1..816 | 119..934 | 4080 | 100 | Plus |
CG4365-RC | 1047 | CG4365-PC | 1..70 | 17..86 | 350 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:18:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4365-RA | 1092 | CG4365-RA | 84..1001 | 17..934 | 4590 | 100 | Plus |
CG4365-RC | 1231 | CG4365-RC | 308..1155 | 87..934 | 4240 | 100 | Plus |
CG4365-RB | 1013 | CG4365-RB | 75..922 | 87..934 | 4240 | 100 | Plus |
CG4365-RC | 1231 | CG4365-RC | 109..178 | 17..86 | 350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:18:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 20799141..20799990 | 85..934 | 4250 | 100 | Plus |
3L | 28110227 | 3L | 20798790..20798859 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:18:46 has no hits.
BS06159.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:47 Download gff for
BS06159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-RA | 1..918 | 17..934 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:32 Download gff for
BS06159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-RA | 78..1009 | 6..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:57:40 Download gff for
BS06159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-RA | 89..1000 | 22..933 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:47 Download gff for
BS06159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-RA | 78..1009 | 6..942 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:09 Download gff for
BS06159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4365-RA | 89..1000 | 22..933 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:09 Download gff for
BS06159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 20798795..20798859 | 22..86 | 100 | -> | Plus |
3L | 20799143..20799989 | 87..933 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:57:40 Download gff for
BS06159.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 20791895..20791959 | 22..86 | 100 | -> | Plus |
arm_3L | 20792243..20793089 | 87..933 | 100 | | Plus |
BS06159.pep Sequence
Translation from 16 to 933
> BS06159.pep
MLASAWRSVATSVETQLTATYFRVQKLRKVGFRGMHSTLEDVQLEGMEIK
ILPALQDNYMYLIVDTKTREAAVVDPVEPELVIKTVQEQQLTLSKVLTTH
HHWDHAGGNEKLLKLWEKELDVYGGDDRIGALNKKVQQDDTFTIGGLHVK
CLSTPCHTTGHICYHITAQQGSGEGAVFTGDTLFQGGCGRFFEGTPEEMY
EALCTKLSALPDATKVFCGHEYTLQNMSFARHVEPDNEVIQQRIEWAKHR
RASQDPTVPSTIGEEKSWNPFMRVHEATVQKHAGGATDPVVTMGKLRKEK
DTFKA*
BS06159.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4365-PA | 305 | CG4365-PA | 1..305 | 1..305 | 1621 | 100 | Plus |
CG4365-PC | 348 | CG4365-PC | 1..348 | 1..305 | 1564 | 87.4 | Plus |
CG4365-PB | 271 | CG4365-PB | 1..271 | 35..305 | 1453 | 100 | Plus |
CG30022-PB | 279 | CG30022-PB | 61..221 | 59..222 | 209 | 32.1 | Plus |