Clone BS06162 Report

Search the DGRC for BS06162

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptGstO2-RB
Protein status:BS06162.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06162.3prime Sequence

783 bp (782 high quality bases) assembled on 2005-12-03

> BS06162.3prime
ATGGTCTAGAAAGCTTTTACAAGGGCTGGAAGGCTACATCGTAGTCCGGT
TTGTTCTCATGGCGGGTCTTCATGAACTTCGCATGGATTCGGGCATCCAA
AGCGGTGGCCTTGACAGCCTCATCCTGAGCCACCAGATCCCTCCACTTCA
ACAAATTCTGATAGCGTGTCTTGTCCAACTCGTAGGGTTCATCCAGAGTG
TACTTGAGGGCCGGGAATCGCTCGAACCAGGGCCAAATCATGTAGTCAGC
AATGCCGATCTTGTTGCCTCCAAAGTATGGTGTTCCGCGCTTGGTGATCT
CCTGCTCGAAGACATCCAGAGCGGTCTCAAAGTTCTTGATGGCATCAGCG
GGTGGATTCTTGGTGAACAGCACGGGGTAAATGGCGCTGACAGCGGGCGA
CAGGCGTTCGATGAGAATCCTGTCTAGCGCCTTTTGCAATGGATCCTTGG
GGAAAAGGGAGCCCTCGCCCGGATACTGTTCATCCAAGTACTCGGCAATG
ACCAGGGACTCCACCAAAGCCGGTTGTCCAGGCAGATTTGGCAACTGGAT
AGCCGGCACCTTGCCCAATGGACTGTAGTCGATGTACCACTCTGGTTTCT
CGCTAAGATCAATGTAAACCGTGTGATGTGGAATCTTTTTGGCGGCCAAA
ACCAAACCGGCACGCTGCGAGTACGGGCAGAATCTCATCGAATAGTAACG
CAGGACTCCATCCTCGGGGATCTCCGGTTTGGGCGAACCCCTCTTGAAGT
GCTTTTGCGGCAGGGCCATGTCGACTGATAACT

BS06162.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG6673-PB 753 CG6673-RB 1..753 769..17 3765 100 Minus
CG6673-PA 756 CG6673-RA 1..35 769..735 175 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:41:09
Subject Length Description Subject Range Query Range Score Percent Strand
GstO2-RB 912 CG6673-RB 71..824 769..16 3770 100 Minus
GstO2-RA 932 CG6673-RA 71..469 769..368 280 72.3 Minus
GstO3-RA 881 CG6776-RA 495..599 326..222 210 81.1 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:41:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8522499..8523222 16..739 3620 100 Plus
3L 28110227 3L 8519909..8520013 326..222 195 79 Minus
Blast to na_te.dros performed on 2015-02-12 04:41:07 has no hits.

BS06162.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:51 Download gff for BS06162.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6673-PB 1..753 17..769 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:04 Download gff for BS06162.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6673-PB 1..753 17..769 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:07:13 Download gff for BS06162.3prime
Subject Subject Range Query Range Percent Splice Strand
GstO2-RB 71..824 16..769 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:52 Download gff for BS06162.3prime
Subject Subject Range Query Range Percent Splice Strand
GstO2-RB 71..824 16..769 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:52 Download gff for BS06162.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 8522499..8523221 16..738 100 <- Plus
3L 8523401..8523431 739..769 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:07:13 Download gff for BS06162.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8515599..8516321 16..738 100 <- Plus
arm_3L 8516501..8516531 739..769 100   Plus

BS06162.5prime Sequence

783 bp (782 high quality bases) assembled on 2005-12-03

> BS06162.5prime
GAAGTTATCAGTCGACATGGCCCTGCCGCAAAAGCACTTCAAGAGGGGTT
CGCCCAAACCGGAGATCCCCGAGGATGGAGTCCTGCGTTACTATTCGATG
AGATTCTGCCCGTACTCGCAGCGTGCCGGTTTGGTTTTGGCCGCCAAAAA
GATTCCACATCACACGGTTTACATTGATCTTAGCGAGAAACCAGAGTGGT
ACATCGACTACAGTCCATTGGGCAAGGTGCCGGCTATCCAGTTGCCAAAT
CTGCCTGGACAACCGGCTTTGGTGGAGTCCCTGGTCATTGCCGAGTACTT
GGATGAACAGTATCCGGGCGAGGGCTCCCTTTTCCCCAAGGATCCATTGC
AAAAGGCGCTAGACAGGATTCTCATCGAACGCCTGTCGCCCGCTGTCAGC
GCCATTTACCCCGTGCTGTTCACCAAGAATCCACCCGCTGATGCCATCAA
GAACTTTGAGACCGCTCTGGATGTCTTCGAGCAGGAGATCACCAAGCGCG
GAACACCATACTTTGGAGGCAACAAGATCGGCATTGCTGACTACATGATT
TGGCCCTGGTTCGAGCGATTCCCGGCCCTCAAGTACACTCTGGATGAACC
CTACGAGTTGGACAAGACACGCTATCAGAATTTGTTGAAGTGGAGGGATC
TGGTGGCTCAGGATGAGGCTGTCAAGGCCACCGCTTTGGATGCCCGAATC
CATGCGAAGTTCATGAAGACCCGCCATGAGAACAAACCGGACTACGATGT
AGCCTTCCAGCCCTTGTAAAAGCTTTCTAGACC

BS06162.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6673-PB 753 CG6673-RB 1..753 17..769 3765 100 Plus
CG6673-PA 756 CG6673-RA 1..35 17..51 175 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:45:57
Subject Length Description Subject Range Query Range Score Percent Strand
GstO2-RB 912 CG6673-RB 71..824 17..770 3770 100 Plus
GstO2-RA 932 CG6673-RA 71..469 17..418 280 72.3 Plus
GstO3-RA 881 CG6776-RA 495..599 460..564 210 81.1 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:45:50
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8522499..8523222 770..47 3620 100 Minus
3L 28110227 3L 8519909..8520013 460..564 195 79 Plus
Blast to na_te.dros performed on 2015-02-04 02:45:53 has no hits.

BS06162.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:52 Download gff for BS06162.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6673-PB 1..753 17..769 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:06 Download gff for BS06162.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6673-PB 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:53:39 Download gff for BS06162.5prime
Subject Subject Range Query Range Percent Splice Strand
GstO2-RB 71..824 17..770 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:39:04 Download gff for BS06162.5prime
Subject Subject Range Query Range Percent Splice Strand
GstO2-RB 71..824 17..770 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:39:04 Download gff for BS06162.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 8522499..8523221 48..770 100 <- Minus
3L 8523401..8523431 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:53:39 Download gff for BS06162.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8515599..8516321 48..770 100 <- Minus
arm_3L 8516501..8516531 17..47 100   Minus

BS06162.complete Sequence

785 bp (785 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635381

> BS06162.complete
GAAGTTATCAGTCGACATGGCCCTGCCGCAAAAGCACTTCAAGAGGGGTT
CGCCCAAACCGGAGATCCCCGAGGATGGAGTCCTGCGTTACTATTCGATG
AGATTCTGCCCGTACTCGCAGCGTGCCGGTTTGGTTTTGGCCGCCAAAAA
GATTCCACATCACACGGTTTACATTGATCTTAGCGAGAAACCAGAGTGGT
ACATCGACTACAGTCCATTGGGCAAGGTGCCGGCTATCCAGTTGCCAAAT
CTGCCTGGACAACCGGCTTTGGTGGAGTCCCTGGTCATTGCCGAGTACTT
GGATGAACAGTATCCGGGCGAGGGCTCCCTTTTCCCCAAGGATCCATTGC
AAAAGGCGCTAGACAGGATTCTCATCGAACGCCTGTCGCCCGCTGTCAGC
GCCATTTACCCCGTGCTGTTCACCAAGAATCCACCCGCTGATGCCATCAA
GAACTTTGAGACCGCTCTGGATGTCTTCGAGCAGGAGATCACCAAGCGCG
GAACACCATACTTTGGAGGCAACAAGATCGGCATTGCTGACTACATGATT
TGGCCCTGGTTCGAGCGATTCCCGGCCCTCAAGTACACTCTGGATGAACC
CTACGAGTTGGACAAGACACGCTATCAGAATTTGTTGAAGTGGAGGGATC
TGGTGGCTCAGGATGAGGCTGTCAAGGCCACCGCTTTGGATGCCCGAATC
CATGCGAAGTTCATGAAGACCCGCCATGAGAACAAACCGGACTACGATGT
AGCCTTCCAGCCCTTGTAAAAGCTTTCTAGACCAT

BS06162.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:24:01
Subject Length Description Subject Range Query Range Score Percent Strand
GstO2-RB 753 CG6673-PB 1..753 17..769 3765 100 Plus
GstO2-RA 756 CG6673-PA 1..215 17..231 265 74.9 Plus
GstO3-RA 726 CG6776-PA 426..530 460..564 195 79 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:24:02
Subject Length Description Subject Range Query Range Score Percent Strand
GstO2-RB 912 CG6673-RB 71..824 17..770 3770 100 Plus
GstO2-RA 932 CG6673-RA 71..285 17..231 265 74.9 Plus
GstO3-RA 881 CG6776-RA 495..599 460..564 195 79 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:23:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8522499..8523222 770..47 3620 100 Minus
3L 28110227 3L 8519909..8520013 460..564 195 79 Plus
Blast to na_te.dros performed on 2014-11-27 16:24:00 has no hits.

BS06162.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:48 Download gff for BS06162.complete
Subject Subject Range Query Range Percent Splice Strand
CG6673-RB 1..753 17..769 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:34 Download gff for BS06162.complete
Subject Subject Range Query Range Percent Splice Strand
CG6673-RB 70..823 17..770 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:17 Download gff for BS06162.complete
Subject Subject Range Query Range Percent Splice Strand
GstO2-RB 71..821 17..767 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:48 Download gff for BS06162.complete
Subject Subject Range Query Range Percent Splice Strand
CG6673-RB 70..823 17..770 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:40 Download gff for BS06162.complete
Subject Subject Range Query Range Percent Splice Strand
GstO2-RB 71..821 17..767 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:40 Download gff for BS06162.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8522502..8523221 48..767 100 <- Minus
3L 8523401..8523431 17..47 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:17 Download gff for BS06162.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8515602..8516321 48..767 100 <- Minus
arm_3L 8516501..8516531 17..47 100   Minus

BS06162.pep Sequence

Translation from 16 to 768

> BS06162.pep
MALPQKHFKRGSPKPEIPEDGVLRYYSMRFCPYSQRAGLVLAAKKIPHHT
VYIDLSEKPEWYIDYSPLGKVPAIQLPNLPGQPALVESLVIAEYLDEQYP
GEGSLFPKDPLQKALDRILIERLSPAVSAIYPVLFTKNPPADAIKNFETA
LDVFEQEITKRGTPYFGGNKIGIADYMIWPWFERFPALKYTLDEPYELDK
TRYQNLLKWRDLVAQDEAVKATALDARIHAKFMKTRHENKPDYDVAFQPL
*

BS06162.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:17
Subject Length Description Subject Range Query Range Score Percent Strand
GstO2-PB 250 CG6673-PB 1..250 1..250 1333 100 Plus
GstO2-PA 251 CG6673-PA 1..248 1..248 890 66.3 Plus
GstO3-PA 241 CG6776-PA 5..239 6..245 669 51.7 Plus
GstO1-PA 254 CG6662-PA 5..245 6..247 637 48.8 Plus
se-PA 243 CG6781-PA 5..238 6..245 620 46.7 Plus