Clone Sequence Records
BS06162.3prime Sequence
783 bp (782 high quality bases) assembled on 2005-12-03
> BS06162.3prime
ATGGTCTAGAAAGCTTTTACAAGGGCTGGAAGGCTACATCGTAGTCCGGT
TTGTTCTCATGGCGGGTCTTCATGAACTTCGCATGGATTCGGGCATCCAA
AGCGGTGGCCTTGACAGCCTCATCCTGAGCCACCAGATCCCTCCACTTCA
ACAAATTCTGATAGCGTGTCTTGTCCAACTCGTAGGGTTCATCCAGAGTG
TACTTGAGGGCCGGGAATCGCTCGAACCAGGGCCAAATCATGTAGTCAGC
AATGCCGATCTTGTTGCCTCCAAAGTATGGTGTTCCGCGCTTGGTGATCT
CCTGCTCGAAGACATCCAGAGCGGTCTCAAAGTTCTTGATGGCATCAGCG
GGTGGATTCTTGGTGAACAGCACGGGGTAAATGGCGCTGACAGCGGGCGA
CAGGCGTTCGATGAGAATCCTGTCTAGCGCCTTTTGCAATGGATCCTTGG
GGAAAAGGGAGCCCTCGCCCGGATACTGTTCATCCAAGTACTCGGCAATG
ACCAGGGACTCCACCAAAGCCGGTTGTCCAGGCAGATTTGGCAACTGGAT
AGCCGGCACCTTGCCCAATGGACTGTAGTCGATGTACCACTCTGGTTTCT
CGCTAAGATCAATGTAAACCGTGTGATGTGGAATCTTTTTGGCGGCCAAA
ACCAAACCGGCACGCTGCGAGTACGGGCAGAATCTCATCGAATAGTAACG
CAGGACTCCATCCTCGGGGATCTCCGGTTTGGGCGAACCCCTCTTGAAGT
GCTTTTGCGGCAGGGCCATGTCGACTGATAACT
BS06162.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6673-PB | 753 | CG6673-RB | 1..753 | 769..17 | 3765 | 100 | Minus |
CG6673-PA | 756 | CG6673-RA | 1..35 | 769..735 | 175 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:41:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO2-RB | 912 | CG6673-RB | 71..824 | 769..16 | 3770 | 100 | Minus |
GstO2-RA | 932 | CG6673-RA | 71..469 | 769..368 | 280 | 72.3 | Minus |
GstO3-RA | 881 | CG6776-RA | 495..599 | 326..222 | 210 | 81.1 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:41:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8522499..8523222 | 16..739 | 3620 | 100 | Plus |
3L | 28110227 | 3L | 8519909..8520013 | 326..222 | 195 | 79 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:41:07 has no hits.
BS06162.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:51 Download gff for
BS06162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6673-PB | 1..753 | 17..769 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:04 Download gff for
BS06162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6673-PB | 1..753 | 17..769 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:07:13 Download gff for
BS06162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO2-RB | 71..824 | 16..769 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:15:52 Download gff for
BS06162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO2-RB | 71..824 | 16..769 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:15:52 Download gff for
BS06162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8522499..8523221 | 16..738 | 100 | <- | Plus |
3L | 8523401..8523431 | 739..769 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:07:13 Download gff for
BS06162.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8515599..8516321 | 16..738 | 100 | <- | Plus |
arm_3L | 8516501..8516531 | 739..769 | 100 | | Plus |
BS06162.5prime Sequence
783 bp (782 high quality bases) assembled on 2005-12-03
> BS06162.5prime
GAAGTTATCAGTCGACATGGCCCTGCCGCAAAAGCACTTCAAGAGGGGTT
CGCCCAAACCGGAGATCCCCGAGGATGGAGTCCTGCGTTACTATTCGATG
AGATTCTGCCCGTACTCGCAGCGTGCCGGTTTGGTTTTGGCCGCCAAAAA
GATTCCACATCACACGGTTTACATTGATCTTAGCGAGAAACCAGAGTGGT
ACATCGACTACAGTCCATTGGGCAAGGTGCCGGCTATCCAGTTGCCAAAT
CTGCCTGGACAACCGGCTTTGGTGGAGTCCCTGGTCATTGCCGAGTACTT
GGATGAACAGTATCCGGGCGAGGGCTCCCTTTTCCCCAAGGATCCATTGC
AAAAGGCGCTAGACAGGATTCTCATCGAACGCCTGTCGCCCGCTGTCAGC
GCCATTTACCCCGTGCTGTTCACCAAGAATCCACCCGCTGATGCCATCAA
GAACTTTGAGACCGCTCTGGATGTCTTCGAGCAGGAGATCACCAAGCGCG
GAACACCATACTTTGGAGGCAACAAGATCGGCATTGCTGACTACATGATT
TGGCCCTGGTTCGAGCGATTCCCGGCCCTCAAGTACACTCTGGATGAACC
CTACGAGTTGGACAAGACACGCTATCAGAATTTGTTGAAGTGGAGGGATC
TGGTGGCTCAGGATGAGGCTGTCAAGGCCACCGCTTTGGATGCCCGAATC
CATGCGAAGTTCATGAAGACCCGCCATGAGAACAAACCGGACTACGATGT
AGCCTTCCAGCCCTTGTAAAAGCTTTCTAGACC
BS06162.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6673-PB | 753 | CG6673-RB | 1..753 | 17..769 | 3765 | 100 | Plus |
CG6673-PA | 756 | CG6673-RA | 1..35 | 17..51 | 175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:45:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO2-RB | 912 | CG6673-RB | 71..824 | 17..770 | 3770 | 100 | Plus |
GstO2-RA | 932 | CG6673-RA | 71..469 | 17..418 | 280 | 72.3 | Plus |
GstO3-RA | 881 | CG6776-RA | 495..599 | 460..564 | 210 | 81.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:45:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8522499..8523222 | 770..47 | 3620 | 100 | Minus |
3L | 28110227 | 3L | 8519909..8520013 | 460..564 | 195 | 79 | Plus |
Blast to na_te.dros performed on 2015-02-04 02:45:53 has no hits.
BS06162.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:52 Download gff for
BS06162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6673-PB | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:06 Download gff for
BS06162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6673-PB | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:53:39 Download gff for
BS06162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO2-RB | 71..824 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:39:04 Download gff for
BS06162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO2-RB | 71..824 | 17..770 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:39:04 Download gff for
BS06162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8522499..8523221 | 48..770 | 100 | <- | Minus |
3L | 8523401..8523431 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:53:39 Download gff for
BS06162.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8515599..8516321 | 48..770 | 100 | <- | Minus |
arm_3L | 8516501..8516531 | 17..47 | 100 | | Minus |
BS06162.complete Sequence
785 bp (785 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635381
> BS06162.complete
GAAGTTATCAGTCGACATGGCCCTGCCGCAAAAGCACTTCAAGAGGGGTT
CGCCCAAACCGGAGATCCCCGAGGATGGAGTCCTGCGTTACTATTCGATG
AGATTCTGCCCGTACTCGCAGCGTGCCGGTTTGGTTTTGGCCGCCAAAAA
GATTCCACATCACACGGTTTACATTGATCTTAGCGAGAAACCAGAGTGGT
ACATCGACTACAGTCCATTGGGCAAGGTGCCGGCTATCCAGTTGCCAAAT
CTGCCTGGACAACCGGCTTTGGTGGAGTCCCTGGTCATTGCCGAGTACTT
GGATGAACAGTATCCGGGCGAGGGCTCCCTTTTCCCCAAGGATCCATTGC
AAAAGGCGCTAGACAGGATTCTCATCGAACGCCTGTCGCCCGCTGTCAGC
GCCATTTACCCCGTGCTGTTCACCAAGAATCCACCCGCTGATGCCATCAA
GAACTTTGAGACCGCTCTGGATGTCTTCGAGCAGGAGATCACCAAGCGCG
GAACACCATACTTTGGAGGCAACAAGATCGGCATTGCTGACTACATGATT
TGGCCCTGGTTCGAGCGATTCCCGGCCCTCAAGTACACTCTGGATGAACC
CTACGAGTTGGACAAGACACGCTATCAGAATTTGTTGAAGTGGAGGGATC
TGGTGGCTCAGGATGAGGCTGTCAAGGCCACCGCTTTGGATGCCCGAATC
CATGCGAAGTTCATGAAGACCCGCCATGAGAACAAACCGGACTACGATGT
AGCCTTCCAGCCCTTGTAAAAGCTTTCTAGACCAT
BS06162.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:24:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO2-RB | 753 | CG6673-PB | 1..753 | 17..769 | 3765 | 100 | Plus |
GstO2-RA | 756 | CG6673-PA | 1..215 | 17..231 | 265 | 74.9 | Plus |
GstO3-RA | 726 | CG6776-PA | 426..530 | 460..564 | 195 | 79 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:24:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO2-RB | 912 | CG6673-RB | 71..824 | 17..770 | 3770 | 100 | Plus |
GstO2-RA | 932 | CG6673-RA | 71..285 | 17..231 | 265 | 74.9 | Plus |
GstO3-RA | 881 | CG6776-RA | 495..599 | 460..564 | 195 | 79 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:23:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8522499..8523222 | 770..47 | 3620 | 100 | Minus |
3L | 28110227 | 3L | 8519909..8520013 | 460..564 | 195 | 79 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:24:00 has no hits.
BS06162.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:48 Download gff for
BS06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6673-RB | 1..753 | 17..769 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:34 Download gff for
BS06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6673-RB | 70..823 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:53:17 Download gff for
BS06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO2-RB | 71..821 | 17..767 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:48 Download gff for
BS06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6673-RB | 70..823 | 17..770 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:17:40 Download gff for
BS06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstO2-RB | 71..821 | 17..767 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:17:40 Download gff for
BS06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8522502..8523221 | 48..767 | 100 | <- | Minus |
3L | 8523401..8523431 | 17..47 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:53:17 Download gff for
BS06162.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8515602..8516321 | 48..767 | 100 | <- | Minus |
arm_3L | 8516501..8516531 | 17..47 | 100 | | Minus |
BS06162.pep Sequence
Translation from 16 to 768
> BS06162.pep
MALPQKHFKRGSPKPEIPEDGVLRYYSMRFCPYSQRAGLVLAAKKIPHHT
VYIDLSEKPEWYIDYSPLGKVPAIQLPNLPGQPALVESLVIAEYLDEQYP
GEGSLFPKDPLQKALDRILIERLSPAVSAIYPVLFTKNPPADAIKNFETA
LDVFEQEITKRGTPYFGGNKIGIADYMIWPWFERFPALKYTLDEPYELDK
TRYQNLLKWRDLVAQDEAVKATALDARIHAKFMKTRHENKPDYDVAFQPL
*
BS06162.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstO2-PB | 250 | CG6673-PB | 1..250 | 1..250 | 1333 | 100 | Plus |
GstO2-PA | 251 | CG6673-PA | 1..248 | 1..248 | 890 | 66.3 | Plus |
GstO3-PA | 241 | CG6776-PA | 5..239 | 6..245 | 669 | 51.7 | Plus |
GstO1-PA | 254 | CG6662-PA | 5..245 | 6..247 | 637 | 48.8 | Plus |
se-PA | 243 | CG6781-PA | 5..238 | 6..245 | 620 | 46.7 | Plus |