Clone Sequence Records
BS06164.3prime Sequence
918 bp (771 high quality bases) assembled on 2005-12-03
> BS06164.3prime
ATGGTCTAGAAAGCTTCTAAATCCAACTGCGTCCCAGACTGCCAGACCTG
CGTTTGGTGGACTTTTCTCCCAGAGAACTGGCTGTCTGGTCCTTGCGCCC
CATCACAGGCGAGCTGCCCGATCCAATATTACGGATTAACTGCTTAAGGC
TGCGCGCCTGTGCGTCGCTGGCCTGGCTCACGCTGTTCGCCTCGGAAGCA
ATGATGCAGAAATCATCGACTATGTGTCCGGGAGGACTGATGTCGAAAGG
CAGAATGTCGCTCAGGCTCTGCTGCTGGCGATACACGCTGCGTCTGCGGG
CTCCATTGTCGACCCCACCGCCAAGTGAACTTCCGCTTGCGGCCGCAGTT
CCTGATTGTTGCTGGGTCATCTGGTTCAGCTCCTGCTGCAAGTTGAGTAC
CCGAGTGCGTAGCCCAGCGTTGTCTTCGCTGAGACGCTGCATGTGGGCCG
CTTCCTGCTCCGCCCGCACGAATGTGGGCTGCGGCAGGCACTGGTATACG
GTGGTCAGGAAGTTGCGCAGCGACAGAAGCAACGTATCCTGCCATTGCTT
GGTGAAGAACAGGGCAAAAGTGGGCGACTCCTCGGCATTCTTGCAAAACG
GAAAGTAGAACCAATCCTTCCACTCGCTTTGCTGCTGCAGATCGCCCGCC
AACTTGTTAAAGAACTCGGACACCTTCTCAGGTCGATTGCTGCTGTAGGC
GGTCACCAGGTAGTATTTTAGGAGGCTGTTTTCCAGTTTCTTGACAGCAA
CGGCATACGTATGCTCCAGCTTGGAAAATATGTTGTTGTCCAGGTGAAAC
CACAAACTCCTGAGAGCCTGAAGGTCAGACGCTTGCACAGCATTATTGAA
TTTGCTCAGAATTCGTTCCGCACGGAAGTGCTGGTCCTTCTCAGTGCGCT
GCTCCAAGTCGAGGGCCT
BS06164.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6005-PA | 975 | CG6005-RA | 140..975 | 852..17 | 4180 | 100 | Minus |
CG6005-PA | 975 | CG6005-RA | 74..135 | 918..857 | 310 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:41:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6005-RB | 1456 | CG6005-RB | 160..1061 | 918..17 | 4465 | 99.8 | Minus |
CG6005-RA | 1313 | CG6005-RA | 160..1061 | 918..17 | 4465 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:41:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19022853..19023442 | 17..606 | 2950 | 100 | Plus |
3R | 32079331 | 3R | 19023701..19023871 | 748..918 | 795 | 97.7 | Plus |
3R | 32079331 | 3R | 19023504..19023645 | 607..748 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-01 08:41:34 has no hits.
BS06164.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:55 Download gff for
BS06164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-PA | 74..975 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:10 Download gff for
BS06164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-PA | 74..975 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:27:49 Download gff for
BS06164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-RA | 152..1053 | 17..918 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:54:36 Download gff for
BS06164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-RA | 160..1061 | 17..918 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:54:36 Download gff for
BS06164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19022853..19023442 | 17..606 | 100 | <- | Plus |
3R | 19023504..19023644 | 607..747 | 100 | <- | Plus |
3R | 19023701..19023871 | 748..918 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:27:49 Download gff for
BS06164.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14848575..14849164 | 17..606 | 100 | <- | Plus |
arm_3R | 14849226..14849366 | 607..747 | 100 | <- | Plus |
arm_3R | 14849423..14849593 | 748..918 | 98 | | Plus |
BS06164.5prime Sequence
814 bp (793 high quality bases) assembled on 2005-12-03
> BS06164.5prime
GAAGTTATCAGTCGACATGGCACAAGTCGCTTTTCTGGACAACCTGCTTA
GGGAGTACCTAGTTTTTCGAGGTTTCTCCAGCACCTTGAAGGCCCTCGAC
TTGGAGCAGCGCACTGAGAAGGACCAGCACTTCCGTGCGGAACGAATTCT
GGAGCAATTCAATAATGCTGTGCAAGCGTCTGACCTTCAGGCTCTCAGGA
GTTTGTGGTTTCACCTGGACAACAACATATTTTCCAAGCTGGAGCATACG
TATGCCGTTGCTGTCAAGAAACTGGAAAACAGCCTCCTAAAATACTACCT
GGTGACCGCCTACAGCAGCAATCGACCTGAGAAGGTGTCCGAGTTCTTTA
ACAAGTTGGCGGGCGATCTGCAGCAGCAAAGCGAGTGGAAGGATTGGTTC
TACTTTCCGTTTTGCAAGAATGCCGAGGAGTCGCCCACTTTTGCCCTGTT
CTTCACCAAGCAATGGCAGGATACGTTGCTTCTGTCGCTGCGCAACTTCC
TGACCACCGTATACCAGTGCCTGCCGCAGCCCACATTCGTGCGGGCGGAG
CAGGAAGCGGCCCACATGCAGCGTCTCAGCGAAGACAACGCTGGGCTACG
CACTCGGGTACTCAACTTGCAGCAGGAGCTGAACCAGATGACCCAGCAAC
AATCAGGAACTGCGGCCGCAAGCGGAAGTTCACTTGGCGGTGGGGTCGAC
AATGGAGCCCGCAGACGCAGCGTGTATCGCCAGCAGCAGAGCCTGAGCGA
CATTCTGCCTTTCGACATCAGTCCTCCCGGACACATAGTCGATGATTTCT
GCATCATTGCTTCC
BS06164.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:19:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6005-PA | 975 | CG6005-RA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:18:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6005-RB | 1456 | CG6005-RB | 87..884 | 17..814 | 3990 | 100 | Plus |
CG6005-RA | 1313 | CG6005-RA | 87..884 | 17..814 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:18:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19023030..19023442 | 814..402 | 2065 | 100 | Minus |
3R | 32079331 | 3R | 19023701..19023944 | 260..17 | 1220 | 100 | Minus |
3R | 32079331 | 3R | 19023504..19023645 | 401..260 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:18:04 has no hits.
BS06164.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:32:56 Download gff for
BS06164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-PA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:12 Download gff for
BS06164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-PA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:32:47 Download gff for
BS06164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-RA | 71..876 | 7..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:32 Download gff for
BS06164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-RA | 79..884 | 7..814 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:32 Download gff for
BS06164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19023701..19023952 | 7..260 | 98 | | Minus |
3R | 19023504..19023644 | 261..401 | 100 | <- | Minus |
3R | 19023030..19023442 | 402..814 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:32:47 Download gff for
BS06164.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14849226..14849366 | 261..401 | 100 | <- | Minus |
arm_3R | 14849423..14849674 | 7..260 | 98 | | Minus |
arm_3R | 14848752..14849164 | 402..814 | 100 | <- | Minus |
BS06164.complete Sequence
1007 bp (1007 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635382
> BS06164.complete
GAAGTTATCAGTCGACATGGCACAAGTCGCTTTTCTGGACAACCTGCTTA
GGGAGTACCTAGTTTTTCGAGGTTTCTCCAGCACCTTGAAGGCCCTCGAC
TTGGAGCAGCGCACTGAGAAGGACCAGCACTTCCGTGCGGAACGAATTCT
GGAGCAATTCAATAATGCTGTGCAAGCGTCTGACCTTCAGGCTCTCAGGA
GTTTGTGGTTTCACCTGGACAACAACATATTTTCCAAGCTGGAGCATACG
TATGCCGTTGCTGTCAAGAAACTGGAAAACAGCCTCCTAAAATACTACCT
GGTGACCGCCTACAGCAGCAATCGACCTGAGAAGGTGTCCGAGTTCTTTA
ACAAGTTGGCGGGCGATCTGCAGCAGCAAAGCGAGTGGAAGGATTGGTTC
TACTTTCCGTTTTGCAAGAATGCCGAGGAGTCGCCCACTTTTGCCCTGTT
CTTCACCAAGCAATGGCAGGATACGTTGCTTCTGTCGCTGCGCAACTTCC
TGACCACCGTATACCAGTGCCTGCCGCAGCCCACATTCGTGCGGGCGGAG
CAGGAAGCGGCCCACATGCAGCGTCTCAGCGAAGACAACGCTGGGCTACG
CACTCGGGTACTCAACTTGCAGCAGGAGCTGAACCAGATGACCCAGCAAC
AATCAGGAACTGCGGCCGCAAGCGGAAGTTCACTTGGCGGTGGGGTCGAC
AATGGAGCCCGCAGACGCAGCGTGTATCGCCAGCAGCAGAGCCTGAGCGA
CATTCTGCCTTTCGACATCAGTCCTCCCGGACACATAGTCGATGATTTCT
GCATCATTGCTTCCGAGGCGAACAGCGTGAGCCAGGCCAGCGACGCACAG
GCGCGCAGCCTTAAGCAGTTAATCCGTAATATTGGATCGGGCAGCTCGCC
TGTGATGGGGCGCAAGGACCAGACAGCCAGTTCTCTGGGAGAAAAGTCCA
CCAAACGCAGGTCTGGCAGTCTGGGACGCAGTTGGATTTAGAAGCTTTCT
AGACCAT
BS06164.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6005-RB | 975 | CG6005-PB | 1..975 | 17..991 | 4875 | 100 | Plus |
CG6005-RA | 975 | CG6005-PA | 1..975 | 17..991 | 4875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6005-RB | 1456 | CG6005-RB | 87..1061 | 17..991 | 4875 | 100 | Plus |
CG6005-RA | 1313 | CG6005-RA | 87..1061 | 17..991 | 4875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:48:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 19022853..19023442 | 991..402 | 2950 | 100 | Minus |
3R | 32079331 | 3R | 19023701..19023944 | 260..17 | 1220 | 100 | Minus |
3R | 32079331 | 3R | 19023504..19023645 | 401..260 | 710 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:48:58 has no hits.
BS06164.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:49 Download gff for
BS06164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-RA | 1..975 | 17..991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:36 Download gff for
BS06164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-RA | 71..1053 | 7..991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:25:38 Download gff for
BS06164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-RA | 79..1053 | 17..991 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:49 Download gff for
BS06164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-RA | 71..1053 | 7..991 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:37 Download gff for
BS06164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6005-RA | 87..1061 | 17..991 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:37 Download gff for
BS06164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 19022853..19023442 | 402..991 | 100 | <- | Minus |
3R | 19023504..19023644 | 261..401 | 100 | <- | Minus |
3R | 19023701..19023944 | 17..260 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:25:38 Download gff for
BS06164.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 14848575..14849164 | 402..991 | 100 | <- | Minus |
arm_3R | 14849226..14849366 | 261..401 | 100 | <- | Minus |
arm_3R | 14849423..14849666 | 17..260 | 100 | | Minus |
BS06164.pep Sequence
Translation from 16 to 990
> BS06164.pep
MAQVAFLDNLLREYLVFRGFSSTLKALDLEQRTEKDQHFRAERILEQFNN
AVQASDLQALRSLWFHLDNNIFSKLEHTYAVAVKKLENSLLKYYLVTAYS
SNRPEKVSEFFNKLAGDLQQQSEWKDWFYFPFCKNAEESPTFALFFTKQW
QDTLLLSLRNFLTTVYQCLPQPTFVRAEQEAAHMQRLSEDNAGLRTRVLN
LQQELNQMTQQQSGTAAASGSSLGGGVDNGARRRSVYRQQQSLSDILPFD
ISPPGHIVDDFCIIASEANSVSQASDAQARSLKQLIRNIGSGSSPVMGRK
DQTASSLGEKSTKRRSGSLGRSWI*
BS06164.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:46:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6005-PB | 324 | CG6005-PB | 1..324 | 1..324 | 1653 | 100 | Plus |
CG6005-PA | 324 | CG6005-PA | 1..324 | 1..324 | 1653 | 100 | Plus |