Clone BS06167 Report

Search the DGRC for BS06167

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:67
Vector:pDNR-Dual
Associated Gene/TranscriptCG7407-RA
Protein status:BS06167.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06167.3prime Sequence

537 bp (536 high quality bases) assembled on 2005-12-03

> BS06167.3prime
ATGGTCTAGAAAGCTTTCAGCGATAGAGCCGCACCTGCTGCTTGAGATCC
TGGTCGCTTATTCGGTCCTGGAGGTTCAATTCCGCCTCCTGTTTGCGCAG
GAGCTCAAAGATGGCCGCCAGCTGCTCGCGCTCTATTCGGCGCTCCTCCT
CGATTTGGCTGGGAGTCAGGGTCTTCTCCATCTTATGCTGGAGCCTCTTG
GCCTTGAGCTGGCCCATCAGGTGGTTGTAGCTGTGCTCGGGCAGCTGTTC
CTCGATTAGCTCAACTTCGCTTTCGGTGGAGTTCTCTTCGTAGGCCTCGT
CATCGTCGGTTTCCTCCCCTTGCGGAGTCCGTGACTCGGAATCCTCCTCA
TCGCGCGGCTCGTCGGCCCCCAGGCCCTCGTCCTCCAGTTCGCCTTTGTC
CTTGAAGATGTTGGCGAAGTAGAAGGCGACCAAAACGCACAGCAGAAGGG
TGACCAGCGCTACCGAGTAGTGGCCTGGTAGTCCAAGAAAGAGAACATCC
AGCGAAGGCAGAAAATCCTGCATGTCGACTGATAACT

BS06167.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7407-PA 507 CG7407-RA 1..507 523..17 2535 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:53:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG7407-RA 1049 CG7407-RA 67..579 528..16 2550 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:53:30
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21823726..21824101 391..16 1880 100 Minus
3L 28110227 3L 21823527..21823664 528..391 675 99.3 Minus
Blast to na_te.dros performed on 2015-02-06 12:53:33 has no hits.

BS06167.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:02 Download gff for BS06167.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7407-PA 1..507 17..523 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:19 Download gff for BS06167.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7407-PA 1..507 17..523 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:47:34 Download gff for BS06167.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7407-RA 67..579 16..528 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:55:06 Download gff for BS06167.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7407-RA 67..579 16..528 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:55:06 Download gff for BS06167.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 21823527..21823663 392..528 99 -> Minus
3L 21823726..21824101 16..391 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:47:34 Download gff for BS06167.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21816627..21816763 392..528 99 -> Minus
arm_3L 21816826..21817201 16..391 100   Minus

BS06167.5prime Sequence

537 bp (536 high quality bases) assembled on 2005-12-03

> BS06167.5prime
GAAGTTATCAGTCGACATGCAGGATTTTCTGCCTTCGCTGGATGTTCTCT
TTCTTGGACTACCAGGCCACTACTCGGTAGCGCTGGTCACCCTTCTGCTG
TGCGTTTTGGTCGCCTTCTACTTCGCCAACATCTTCAAGGACAAAGGCGA
ACTGGAGGACGAGGGCCTGGGGGCCGACGAGCCGCGCGATGAGGAGGATT
CCGAGTCACGGACTCCGCAAGGGGAGGAAACCGACGATGACGAGGCCTAC
GAAGAGAACTCCACCGAAAGCGAAGTTGAGCTAATCGAGGAACAGCTGCC
CGAGCACAGCTACAACCACCTGATGGGCCAGCTCAAGGCCAAGAGGCTCC
AGCATAAGATGGAGAAGACCCTGACTCCCAGCCAAATCGAGGAGGAGCGC
CGAATAGAGCGCGAGCAGCTGGCGGCCATCTTTGAGCTCCTGCGCAAACA
GGAGGCGGAATTGAACCTCCAGGACCGAATAAGCGACCAGGATCTCAAGC
AGCAGGTGCGGCTCTATCGCTGAAAGCTTTCTAGACC

BS06167.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG7407-PA 507 CG7407-RA 1..507 17..523 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:44:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG7407-RA 1049 CG7407-RA 67..579 12..524 2550 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:44:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21823726..21824101 149..524 1880 100 Plus
3L 28110227 3L 21823527..21823664 12..149 675 99.3 Plus
Blast to na_te.dros performed on 2015-02-12 06:44:17 has no hits.

BS06167.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:03 Download gff for BS06167.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7407-PA 1..507 17..523 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:20 Download gff for BS06167.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7407-PA 1..507 17..523 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:20:30 Download gff for BS06167.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7407-RA 67..579 12..524 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:43 Download gff for BS06167.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7407-RA 67..579 12..524 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:43 Download gff for BS06167.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 21823527..21823663 12..148 99 -> Plus
3L 21823726..21824101 149..524 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:20:30 Download gff for BS06167.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21816627..21816763 12..148 99 -> Plus
arm_3L 21816826..21817201 149..524 100   Plus

BS06167.complete Sequence

539 bp (539 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635383

> BS06167.complete
GAAGTTATCAGTCGACATGCAGGATTTTCTGCCTTCGCTGGATGTTCTCT
TTCTTGGACTACCAGGCCACTACTCGGTAGCGCTGGTCACCCTTCTGCTG
TGCGTTTTGGTCGCCTTCTACTTCGCCAACATCTTCAAGGACAAAGGCGA
ACTGGAGGACGAGGGCCTGGGGGCCGACGAGCCGCGCGATGAGGAGGATT
CCGAGTCACGGACTCCGCAAGGGGAGGAAACCGACGATGACGAGGCCTAC
GAAGAGAACTCCACCGAAAGCGAAGTTGAGCTAATCGAGGAACAGCTGCC
CGAGCACAGCTACAACCACCTGATGGGCCAGCTCAAGGCCAAGAGGCTCC
AGCATAAGATGGAGAAGACCCTGACTCCCAGCCAAATCGAGGAGGAGCGC
CGAATAGAGCGCGAGCAGCTGGCGGCCATCTTTGAGCTCCTGCGCAAACA
GGAGGCGGAATTGAACCTCCAGGACCGAATAAGCGACCAGGATCTCAAGC
AGCAGGTGCGGCTCTATCGCTGAAAGCTTTCTAGACCAT

BS06167.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:52:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7407-RA 507 CG7407-PA 1..507 17..523 2535 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:52:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG7407-RA 1049 CG7407-RA 67..579 12..524 2550 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:52:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21823726..21824101 149..524 1880 100 Plus
3L 28110227 3L 21823527..21823664 12..149 675 99.3 Plus
Blast to na_te.dros performed on 2014-11-27 01:52:40 has no hits.

BS06167.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:53:28 Download gff for BS06167.complete
Subject Subject Range Query Range Percent Splice Strand
CG7407-RA 1..507 17..523 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:29:11 Download gff for BS06167.complete
Subject Subject Range Query Range Percent Splice Strand
CG7407-RA 63..575 12..524 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:57 Download gff for BS06167.complete
Subject Subject Range Query Range Percent Splice Strand
CG7407-RA 72..577 17..522 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:53:29 Download gff for BS06167.complete
Subject Subject Range Query Range Percent Splice Strand
CG7407-RA 63..575 12..524 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:33:28 Download gff for BS06167.complete
Subject Subject Range Query Range Percent Splice Strand
CG7407-RA 72..577 17..522 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:33:28 Download gff for BS06167.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21823532..21823663 17..148 100 -> Plus
3L 21823726..21824099 149..522 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:57 Download gff for BS06167.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21816632..21816763 17..148 100 -> Plus
arm_3L 21816826..21817199 149..522 100   Plus

BS06167.pep Sequence

Translation from 16 to 522

> BS06167.pep
MQDFLPSLDVLFLGLPGHYSVALVTLLLCVLVAFYFANIFKDKGELEDEG
LGADEPRDEEDSESRTPQGEETDDDEAYEENSTESEVELIEEQLPEHSYN
HLMGQLKAKRLQHKMEKTLTPSQIEEERRIEREQLAAIFELLRKQEAELN
LQDRISDQDLKQQVRLYR*

BS06167.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:49:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7407-PA 168 CG7407-PA 1..168 1..168 852 100 Plus