Clone Sequence Records
BS06173.3prime Sequence
884 bp (825 high quality bases) assembled on 2005-12-03
> BS06173.3prime
ATGGTCTAGAAAGCTTTCACAACTTGCTGCGCTTTTTGTTGGTCCATGTG
AAAAATCGCTTTGGTTTTCTCGATCTATCTTCCTTTCCGGCCACAGTCCA
GGAGGTCATAGCAGGAGGTCTGTGATGTTGGATGAAGGGCACAATGTAAC
CGGCGCATTCCTCGGCGGCATGGAGATGCAGATGATGGGTGCCGTTTTCC
ACCTCGTAGAACTCAAAGTGCGGATTATCCTTGGCCAAAATCGATATAGC
CTCGTTGTTGCGGACGGAGAGATATGGTGACAAGGAGCCCTTGATGATTA
GATATGGCTTTTTAATGATCCGCCTCGCCATTTCTGCCCCCAGACTATCG
TCGATATCTATGTAGTGGTAGTACTTTACTCGAATATCCCTAGTGAAATA
GAACCGTTCGGGATACAGTTTCGACTTGGCCAACTGGCGGTGGAGGAGGT
GCTTAGCCAGTTCGGGGGATACGGAATTAAAGCTTCCCGCAGCCAGCACC
TTTCCCAATTGGTTGTGCGTGTAGGAGGGCGGCTCAATGTAATTTCCCAG
CTTCTGTCGCTCAACATTCACTAGTTGTTTCTCTATACTAAGGTCCATGT
AGTCTATGTCGTTTCTCAAGGGGAGCAGTATGTCCAGGGAGACGATCATA
TCGACGGTGTGAGGAGCAAGAGAGGCATAAATGAAGCTCAGGACTCCGCC
CAGTGAGTGTCCAATGAGAGAGACCTTTGACCATCCGTACTCCTTCATGA
CCAGTGGAATAGTGAACACGTACTCGTACACACTGTAGTACATTCCCGGT
GGCAAATGCGAGGATCTTCCATGTCCTGGCAGATCGATGCAGAGTACTCC
TAGATAGTCAGGAAGCAGGGGAATGAGCCGATCG
BS06173.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-PA | 1008 | CG5704-RA | 141..1008 | 884..17 | 4340 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-RB | 1289 | CG5704-RB | 266..1133 | 884..17 | 4340 | 100 | Minus |
CG5704-RA | 1220 | CG5704-RA | 266..1133 | 884..17 | 4340 | 100 | Minus |
CG15879-RA | 1389 | CG15879-RA | 271..538 | 884..617 | 395 | 76.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2169709..2170576 | 17..884 | 4340 | 100 | Plus |
3L | 28110227 | 3L | 2168401..2168668 | 617..884 | 395 | 76.5 | Plus |
3L | 28110227 | 3L | 2172387..2172540 | 697..850 | 275 | 78.6 | Plus |
3L | 28110227 | 3L | 2173650..2173853 | 681..884 | 270 | 75.5 | Plus |
3L | 28110227 | 3L | 2173080..2173195 | 114..229 | 265 | 81.9 | Plus |
3L | 28110227 | 3L | 2167889..2167998 | 117..226 | 250 | 81.8 | Plus |
3L | 28110227 | 3L | 2171880..2171938 | 183..241 | 235 | 93.2 | Plus |
Blast to na_te.dros performed on 2015-01-31 17:05:44 has no hits.
BS06173.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:15 Download gff for
BS06173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-PA | 141..1008 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:37 Download gff for
BS06173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-PA | 141..1008 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:19 Download gff for
BS06173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 266..1133 | 17..884 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:08 Download gff for
BS06173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 266..1133 | 17..884 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:08 Download gff for
BS06173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2169709..2170576 | 17..884 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:19 Download gff for
BS06173.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2169709..2170576 | 17..884 | 100 | | Plus |
BS06173.5prime Sequence
834 bp (820 high quality bases) assembled on 2005-12-03
> BS06173.5prime
GAAGTTATCAGTCGACATGGGAACTTTGTCACTGAGCGATTTCGAAGCTG
TGAAGATTCCCGTACCCTGGGGTCACATTTCTGGACGTTGGTACGGAAAT
CGGAACGAGCGACCCATCTTGGCGATTCACGGATGGCTGGACAACCTGGG
AACCTTCGATCGGCTCATTCCCCTGCTTCCTGACTATCTAGGAGTACTCT
GCATCGATCTGCCAGGACATGGAAGATCCTCGCATTTGCCACCGGGAATG
TACTACAGTGTGTACGAGTACGTGTTCACTATTCCACTGGTCATGAAGGA
GTACGGATGGTCAAAGGTCTCTCTCATTGGACACTCACTGGGCGGAGTCC
TGAGCTTCATTTATGCCTCTCTTGCTCCTCACACCGTCGATATGATCGTC
TCCCTGGACATACTGCTCCCCTTGAGAAACGACATAGACTACATGGACCT
TAGTATAGAGAAACAACTAGTGAATGTTGAGCGACAGAAGCTGGGAAATT
ACATTGAGCCGCCCTCCTACACGCACAACCAATTGGGAAAGGTGCTGGCT
GCGGGAAGCTTTAATTCCGTATCCCCCGAACTGGCTAAGCACCTCCTCCA
CCGCCAGTTGGCCAAGTCGAAACTGTATCCCGAACGGTTCTATTTCACTA
GGGATATTCGAGTAAAGTACTACCACTACATAGATATCGACGATAGTCTG
GGGGCAGAAATGGCGAGGCGGATCATTAAAAAGCCATATCTAATCATCAA
GGGCTCCTTGTCACCATATCTCTCCGTCCGCAACAACGAGGCTATATCGA
TTTTGGCCAAGGATAATCCGCACTTTGAGTTCTA
BS06173.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-PA | 1008 | CG5704-RA | 1..818 | 17..834 | 4090 | 100 | Plus |
CG15879-PA | 1029 | CG15879-RA | 82..161 | 107..186 | 275 | 93.7 | Plus |
CG15820-PA | 927 | CG15820-RA | 89..164 | 111..186 | 255 | 93.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-RB | 1289 | CG5704-RB | 126..943 | 17..834 | 4090 | 100 | Plus |
CG5704-RA | 1220 | CG5704-RA | 126..943 | 17..834 | 4090 | 100 | Plus |
CG15879-RA | 1389 | CG15879-RA | 126..538 | 12..424 | 730 | 78.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:04:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2169899..2170692 | 834..41 | 3970 | 100 | Minus |
3L | 28110227 | 3L | 2168401..2168761 | 424..64 | 680 | 79.2 | Minus |
3L | 28110227 | 3L | 2173650..2173960 | 360..50 | 520 | 77.8 | Minus |
3L | 28110227 | 3L | 2172387..2172680 | 344..51 | 480 | 77.6 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:04:50 has no hits.
BS06173.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:16 Download gff for
BS06173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:39 Download gff for
BS06173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:29:58 Download gff for
BS06173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 117..942 | 5..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:51:40 Download gff for
BS06173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 117..942 | 5..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:51:40 Download gff for
BS06173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2169900..2170692 | 41..833 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:29:58 Download gff for
BS06173.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2169900..2170692 | 41..833 | 100 | <- | Minus |
BS06173.complete Sequence
1040 bp (1040 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635384
> BS06173.complete
GAAGTTATCAGTCGACATGGGAACTTTGTCACTGAGCGATTTCGAAGCTG
TGAAGATTCCCGTACCCTGGGGTCACATTTCTGGACGTTGGTACGGAAAT
CGGAACGAGCGACCCATCTTGGCGATTCACGGATGGCTGGACAACCTGGG
AACCTTCGATCGGCTCATTCCCCTGCTTCCTGACTATCTAGGAGTACTCT
GCATCGATCTGCCAGGACATGGAAGATCCTCGCATTTGCCACCGGGAATG
TACTACAGTGTGTACGAGTACGTGTTCACTATTCCACTGGTCATGAAGGA
GTACGGATGGTCAAAGGTCTCTCTCATTGGACACTCACTGGGCGGAGTCC
TGAGCTTCATTTATGCCTCTCTTGCTCCTCACACCGTCGATATGATCGTC
TCCCTGGACATACTGCTCCCCTTGAGAAACGACATAGACTACATGGACCT
TAGTATAGAGAAACAACTAGTGAATGTTGAGCGACAGAAGCTGGGAAATT
ACATTGAGCCGCCCTCCTACACGCACAACCAATTGGGAAAGGTGCTGGCT
GCGGGAAGCTTTAATTCCGTATCCCCCGAACTGGCTAAGCACCTCCTCCA
CCGCCAGTTGGCCAAGTCGAAACTGTATCCCGAACGGTTCTATTTCACTA
GGGATATTCGAGTAAAGTACTACCACTACATAGATATCGACGATAGTCTG
GGGGCAGAAATGGCGAGGCGGATCATTAAAAAGCCATATCTAATCATCAA
GGGCTCCTTGTCACCATATCTCTCCGTCCGCAACAACGAGGCTATATCGA
TTTTGGCCAAGGATAATCCGCACTTTGAGTTCTACGAGGTGGAAAACGGC
ACCCATCATCTGCATCTCCATGCCGCCGAGGAATGCGCCGGTTACATTGT
GCCCTTCATCCAACATCACAGACCTCCTGCTATGACCTCCTGGACTGTGG
CCGGAAAGGAAGATAGATCGAGAAAACCAAAGCGATTTTTCACATGGACC
AACAAAAAGCGCAGCAAGTTGTGAAAGCTTTCTAGACCAT
BS06173.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-RB | 1008 | CG5704-PB | 1..1008 | 17..1024 | 5040 | 100 | Plus |
CG5704-RA | 1008 | CG5704-PA | 1..1008 | 17..1024 | 5040 | 100 | Plus |
CG15879-RA | 1029 | CG15879-PA | 2..399 | 27..424 | 685 | 78.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-RB | 1289 | CG5704-RB | 126..1133 | 17..1024 | 5040 | 100 | Plus |
CG5704-RA | 1220 | CG5704-RA | 126..1133 | 17..1024 | 5040 | 100 | Plus |
CG15879-RA | 1389 | CG15879-RA | 126..538 | 12..424 | 730 | 78.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 2169709..2170692 | 1024..41 | 4920 | 100 | Minus |
3L | 28110227 | 3L | 2168401..2168761 | 424..64 | 680 | 79.2 | Minus |
3L | 28110227 | 3L | 2173650..2173960 | 360..50 | 520 | 77.8 | Minus |
3L | 28110227 | 3L | 2172387..2172680 | 344..51 | 480 | 77.6 | Minus |
3L | 28110227 | 3L | 2173080..2173195 | 927..812 | 265 | 81.9 | Minus |
3L | 28110227 | 3L | 2167889..2167998 | 924..815 | 250 | 81.8 | Minus |
3L | 28110227 | 3L | 2171880..2171938 | 858..800 | 235 | 93.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:33:08 has no hits.
BS06173.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:31 Download gff for
BS06173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 1..1008 | 17..1024 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:11 Download gff for
BS06173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 100..1116 | 5..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:49 Download gff for
BS06173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 126..1132 | 17..1023 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:31 Download gff for
BS06173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 100..1116 | 5..1024 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:52 Download gff for
BS06173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5704-RA | 126..1132 | 17..1023 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:52 Download gff for
BS06173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 2169710..2170692 | 41..1023 | 100 | <- | Minus |
3L | 2170823..2170846 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:49 Download gff for
BS06173.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 2169710..2170692 | 41..1023 | 100 | <- | Minus |
arm_3L | 2170823..2170846 | 17..40 | 100 | | Minus |
BS06173.pep Sequence
Translation from 16 to 1023
> BS06173.pep
MGTLSLSDFEAVKIPVPWGHISGRWYGNRNERPILAIHGWLDNLGTFDRL
IPLLPDYLGVLCIDLPGHGRSSHLPPGMYYSVYEYVFTIPLVMKEYGWSK
VSLIGHSLGGVLSFIYASLAPHTVDMIVSLDILLPLRNDIDYMDLSIEKQ
LVNVERQKLGNYIEPPSYTHNQLGKVLAAGSFNSVSPELAKHLLHRQLAK
SKLYPERFYFTRDIRVKYYHYIDIDDSLGAEMARRIIKKPYLIIKGSLSP
YLSVRNNEAISILAKDNPHFEFYEVENGTHHLHLHAAEECAGYIVPFIQH
HRPPAMTSWTVAGKEDRSRKPKRFFTWTNKKRSKL*
BS06173.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5704-PB | 335 | CG5704-PB | 1..335 | 1..335 | 1791 | 100 | Plus |
CG5704-PA | 335 | CG5704-PA | 1..335 | 1..335 | 1791 | 100 | Plus |
CG15879-PA | 342 | CG15879-PA | 1..342 | 4..335 | 1212 | 65.2 | Plus |
CG15820-PA | 308 | CG15820-PA | 7..303 | 9..304 | 1096 | 68.4 | Plus |
CG5707-PA | 357 | CG5707-PA | 22..329 | 12..316 | 799 | 49.2 | Plus |