Clone BS06173 Report

Search the DGRC for BS06173

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:73
Vector:pDNR-Dual
Associated Gene/TranscriptCG5704-RA
Protein status:BS06173.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06173.3prime Sequence

884 bp (825 high quality bases) assembled on 2005-12-03

> BS06173.3prime
ATGGTCTAGAAAGCTTTCACAACTTGCTGCGCTTTTTGTTGGTCCATGTG
AAAAATCGCTTTGGTTTTCTCGATCTATCTTCCTTTCCGGCCACAGTCCA
GGAGGTCATAGCAGGAGGTCTGTGATGTTGGATGAAGGGCACAATGTAAC
CGGCGCATTCCTCGGCGGCATGGAGATGCAGATGATGGGTGCCGTTTTCC
ACCTCGTAGAACTCAAAGTGCGGATTATCCTTGGCCAAAATCGATATAGC
CTCGTTGTTGCGGACGGAGAGATATGGTGACAAGGAGCCCTTGATGATTA
GATATGGCTTTTTAATGATCCGCCTCGCCATTTCTGCCCCCAGACTATCG
TCGATATCTATGTAGTGGTAGTACTTTACTCGAATATCCCTAGTGAAATA
GAACCGTTCGGGATACAGTTTCGACTTGGCCAACTGGCGGTGGAGGAGGT
GCTTAGCCAGTTCGGGGGATACGGAATTAAAGCTTCCCGCAGCCAGCACC
TTTCCCAATTGGTTGTGCGTGTAGGAGGGCGGCTCAATGTAATTTCCCAG
CTTCTGTCGCTCAACATTCACTAGTTGTTTCTCTATACTAAGGTCCATGT
AGTCTATGTCGTTTCTCAAGGGGAGCAGTATGTCCAGGGAGACGATCATA
TCGACGGTGTGAGGAGCAAGAGAGGCATAAATGAAGCTCAGGACTCCGCC
CAGTGAGTGTCCAATGAGAGAGACCTTTGACCATCCGTACTCCTTCATGA
CCAGTGGAATAGTGAACACGTACTCGTACACACTGTAGTACATTCCCGGT
GGCAAATGCGAGGATCTTCCATGTCCTGGCAGATCGATGCAGAGTACTCC
TAGATAGTCAGGAAGCAGGGGAATGAGCCGATCG

BS06173.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5704-PA 1008 CG5704-RA 141..1008 884..17 4340 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:05:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5704-RB 1289 CG5704-RB 266..1133 884..17 4340 100 Minus
CG5704-RA 1220 CG5704-RA 266..1133 884..17 4340 100 Minus
CG15879-RA 1389 CG15879-RA 271..538 884..617 395 76.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2169709..2170576 17..884 4340 100 Plus
3L 28110227 3L 2168401..2168668 617..884 395 76.5 Plus
3L 28110227 3L 2172387..2172540 697..850 275 78.6 Plus
3L 28110227 3L 2173650..2173853 681..884 270 75.5 Plus
3L 28110227 3L 2173080..2173195 114..229 265 81.9 Plus
3L 28110227 3L 2167889..2167998 117..226 250 81.8 Plus
3L 28110227 3L 2171880..2171938 183..241 235 93.2 Plus
Blast to na_te.dros performed on 2015-01-31 17:05:44 has no hits.

BS06173.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:15 Download gff for BS06173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5704-PA 141..1008 17..884 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:37 Download gff for BS06173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5704-PA 141..1008 17..884 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:19 Download gff for BS06173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5704-RA 266..1133 17..884 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:08 Download gff for BS06173.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5704-RA 266..1133 17..884 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:08 Download gff for BS06173.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 2169709..2170576 17..884 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:19 Download gff for BS06173.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2169709..2170576 17..884 100   Plus

BS06173.5prime Sequence

834 bp (820 high quality bases) assembled on 2005-12-03

> BS06173.5prime
GAAGTTATCAGTCGACATGGGAACTTTGTCACTGAGCGATTTCGAAGCTG
TGAAGATTCCCGTACCCTGGGGTCACATTTCTGGACGTTGGTACGGAAAT
CGGAACGAGCGACCCATCTTGGCGATTCACGGATGGCTGGACAACCTGGG
AACCTTCGATCGGCTCATTCCCCTGCTTCCTGACTATCTAGGAGTACTCT
GCATCGATCTGCCAGGACATGGAAGATCCTCGCATTTGCCACCGGGAATG
TACTACAGTGTGTACGAGTACGTGTTCACTATTCCACTGGTCATGAAGGA
GTACGGATGGTCAAAGGTCTCTCTCATTGGACACTCACTGGGCGGAGTCC
TGAGCTTCATTTATGCCTCTCTTGCTCCTCACACCGTCGATATGATCGTC
TCCCTGGACATACTGCTCCCCTTGAGAAACGACATAGACTACATGGACCT
TAGTATAGAGAAACAACTAGTGAATGTTGAGCGACAGAAGCTGGGAAATT
ACATTGAGCCGCCCTCCTACACGCACAACCAATTGGGAAAGGTGCTGGCT
GCGGGAAGCTTTAATTCCGTATCCCCCGAACTGGCTAAGCACCTCCTCCA
CCGCCAGTTGGCCAAGTCGAAACTGTATCCCGAACGGTTCTATTTCACTA
GGGATATTCGAGTAAAGTACTACCACTACATAGATATCGACGATAGTCTG
GGGGCAGAAATGGCGAGGCGGATCATTAAAAAGCCATATCTAATCATCAA
GGGCTCCTTGTCACCATATCTCTCCGTCCGCAACAACGAGGCTATATCGA
TTTTGGCCAAGGATAATCCGCACTTTGAGTTCTA

BS06173.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG5704-PA 1008 CG5704-RA 1..818 17..834 4090 100 Plus
CG15879-PA 1029 CG15879-RA 82..161 107..186 275 93.7 Plus
CG15820-PA 927 CG15820-RA 89..164 111..186 255 93.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG5704-RB 1289 CG5704-RB 126..943 17..834 4090 100 Plus
CG5704-RA 1220 CG5704-RA 126..943 17..834 4090 100 Plus
CG15879-RA 1389 CG15879-RA 126..538 12..424 730 78.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:04:47
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2169899..2170692 834..41 3970 100 Minus
3L 28110227 3L 2168401..2168761 424..64 680 79.2 Minus
3L 28110227 3L 2173650..2173960 360..50 520 77.8 Minus
3L 28110227 3L 2172387..2172680 344..51 480 77.6 Minus
Blast to na_te.dros performed on 2015-02-09 23:04:50 has no hits.

BS06173.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:16 Download gff for BS06173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5704-PA 1..817 17..833 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:39 Download gff for BS06173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5704-PA 1..817 17..833 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:29:58 Download gff for BS06173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5704-RA 117..942 5..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:51:40 Download gff for BS06173.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5704-RA 117..942 5..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:51:40 Download gff for BS06173.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 2169900..2170692 41..833 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:29:58 Download gff for BS06173.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2169900..2170692 41..833 100 <- Minus

BS06173.complete Sequence

1040 bp (1040 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635384

> BS06173.complete
GAAGTTATCAGTCGACATGGGAACTTTGTCACTGAGCGATTTCGAAGCTG
TGAAGATTCCCGTACCCTGGGGTCACATTTCTGGACGTTGGTACGGAAAT
CGGAACGAGCGACCCATCTTGGCGATTCACGGATGGCTGGACAACCTGGG
AACCTTCGATCGGCTCATTCCCCTGCTTCCTGACTATCTAGGAGTACTCT
GCATCGATCTGCCAGGACATGGAAGATCCTCGCATTTGCCACCGGGAATG
TACTACAGTGTGTACGAGTACGTGTTCACTATTCCACTGGTCATGAAGGA
GTACGGATGGTCAAAGGTCTCTCTCATTGGACACTCACTGGGCGGAGTCC
TGAGCTTCATTTATGCCTCTCTTGCTCCTCACACCGTCGATATGATCGTC
TCCCTGGACATACTGCTCCCCTTGAGAAACGACATAGACTACATGGACCT
TAGTATAGAGAAACAACTAGTGAATGTTGAGCGACAGAAGCTGGGAAATT
ACATTGAGCCGCCCTCCTACACGCACAACCAATTGGGAAAGGTGCTGGCT
GCGGGAAGCTTTAATTCCGTATCCCCCGAACTGGCTAAGCACCTCCTCCA
CCGCCAGTTGGCCAAGTCGAAACTGTATCCCGAACGGTTCTATTTCACTA
GGGATATTCGAGTAAAGTACTACCACTACATAGATATCGACGATAGTCTG
GGGGCAGAAATGGCGAGGCGGATCATTAAAAAGCCATATCTAATCATCAA
GGGCTCCTTGTCACCATATCTCTCCGTCCGCAACAACGAGGCTATATCGA
TTTTGGCCAAGGATAATCCGCACTTTGAGTTCTACGAGGTGGAAAACGGC
ACCCATCATCTGCATCTCCATGCCGCCGAGGAATGCGCCGGTTACATTGT
GCCCTTCATCCAACATCACAGACCTCCTGCTATGACCTCCTGGACTGTGG
CCGGAAAGGAAGATAGATCGAGAAAACCAAAGCGATTTTTCACATGGACC
AACAAAAAGCGCAGCAAGTTGTGAAAGCTTTCTAGACCAT

BS06173.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:33:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5704-RB 1008 CG5704-PB 1..1008 17..1024 5040 100 Plus
CG5704-RA 1008 CG5704-PA 1..1008 17..1024 5040 100 Plus
CG15879-RA 1029 CG15879-PA 2..399 27..424 685 78.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:33:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG5704-RB 1289 CG5704-RB 126..1133 17..1024 5040 100 Plus
CG5704-RA 1220 CG5704-RA 126..1133 17..1024 5040 100 Plus
CG15879-RA 1389 CG15879-RA 126..538 12..424 730 78.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 2169709..2170692 1024..41 4920 100 Minus
3L 28110227 3L 2168401..2168761 424..64 680 79.2 Minus
3L 28110227 3L 2173650..2173960 360..50 520 77.8 Minus
3L 28110227 3L 2172387..2172680 344..51 480 77.6 Minus
3L 28110227 3L 2173080..2173195 927..812 265 81.9 Minus
3L 28110227 3L 2167889..2167998 924..815 250 81.8 Minus
3L 28110227 3L 2171880..2171938 858..800 235 93.2 Minus
Blast to na_te.dros performed on 2014-11-28 00:33:08 has no hits.

BS06173.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:31 Download gff for BS06173.complete
Subject Subject Range Query Range Percent Splice Strand
CG5704-RA 1..1008 17..1024 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:11 Download gff for BS06173.complete
Subject Subject Range Query Range Percent Splice Strand
CG5704-RA 100..1116 5..1024 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:26:49 Download gff for BS06173.complete
Subject Subject Range Query Range Percent Splice Strand
CG5704-RA 126..1132 17..1023 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:31 Download gff for BS06173.complete
Subject Subject Range Query Range Percent Splice Strand
CG5704-RA 100..1116 5..1024 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:33:52 Download gff for BS06173.complete
Subject Subject Range Query Range Percent Splice Strand
CG5704-RA 126..1132 17..1023 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:33:52 Download gff for BS06173.complete
Subject Subject Range Query Range Percent Splice Strand
3L 2169710..2170692 41..1023 100 <- Minus
3L 2170823..2170846 17..40 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:26:49 Download gff for BS06173.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 2169710..2170692 41..1023 100 <- Minus
arm_3L 2170823..2170846 17..40 100   Minus

BS06173.pep Sequence

Translation from 16 to 1023

> BS06173.pep
MGTLSLSDFEAVKIPVPWGHISGRWYGNRNERPILAIHGWLDNLGTFDRL
IPLLPDYLGVLCIDLPGHGRSSHLPPGMYYSVYEYVFTIPLVMKEYGWSK
VSLIGHSLGGVLSFIYASLAPHTVDMIVSLDILLPLRNDIDYMDLSIEKQ
LVNVERQKLGNYIEPPSYTHNQLGKVLAAGSFNSVSPELAKHLLHRQLAK
SKLYPERFYFTRDIRVKYYHYIDIDDSLGAEMARRIIKKPYLIIKGSLSP
YLSVRNNEAISILAKDNPHFEFYEVENGTHHLHLHAAEECAGYIVPFIQH
HRPPAMTSWTVAGKEDRSRKPKRFFTWTNKKRSKL*

BS06173.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG5704-PB 335 CG5704-PB 1..335 1..335 1791 100 Plus
CG5704-PA 335 CG5704-PA 1..335 1..335 1791 100 Plus
CG15879-PA 342 CG15879-PA 1..342 4..335 1212 65.2 Plus
CG15820-PA 308 CG15820-PA 7..303 9..304 1096 68.4 Plus
CG5707-PA 357 CG5707-PA 22..329 12..316 799 49.2 Plus