Clone Sequence Records
BS06174.3prime Sequence
819 bp (818 high quality bases) assembled on 2005-12-03
> BS06174.3prime
ATGGTCTAGAAAGCTTTCAATTTGGATACAGTATATCGTAGTGGCCTGGT
CGATATATCAGGTAAATTCGGGGCTCGCTTCCCTCGGGGAAATCGTGGGC
CTTCACAGTCCCACCTTCGCCACGGTCCAAGTACTCGACACGAACTCCAG
CGCCGAGGGCGGTGCATAGAGCGATTATGTGGATGTGATCCGATTCCTTG
TACATCGGCTCCACTTCCAGATGGCGGAACGCCTCAATGGTGAGGTCGCC
TTCGATGAAATTTTGGTAAAAATCGGCCTCCTCCTGCAGTTTTCCCGAGG
TGATCAAACGTAGGTAAACCACCACGTAGTCTGAGTAACCCTGCTCATTG
AAGATCTTGTGCAACTCATCTTGGACCGTGCTGTGTCCTCCTGCATTGTC
GGGGCTAACGCGCTGGATGACTTCCATGAACGTTTCGTGAAAGTCCTCCA
ATGTAAAACTAGGAAATCCCAGCTGAACGAGCTTCTCCTTGGACTCCTCG
GCCAGTTTTTTGAACTCCTGGTAGGCACTGGTGTTTGAGATCAAGTACTC
CAAGTAGGAGTAGGCGAAGGCTCGGAAGAAACAATTGCCATCGGGGCGGG
TGCGGCGAATGAACTTGTACTTTTTGGACAGATCCTGGATCTTGGCGGTG
AAGATCTCGTCGCCACTGTATTCCGCATACAAGCAGGTGAGTGGCAACTG
CTCGCTGACCAAGGGAGTTGTGTCGCTGATCTCTTTTTCAATATCCCGTT
TCTGCTGAATTATTAGTTCGTCGCGATTGCCATCATTATGGGTAAACGGC
TCCATGTCGACTGATAACT
BS06174.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4968-PA | 789 | CG4968-RA | 1..789 | 805..17 | 3945 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:05:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4968-RA | 986 | CG4968-RA | 122..913 | 807..16 | 3960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10307557..10307972 | 431..16 | 2080 | 100 | Minus |
2L | 23513712 | 2L | 10307192..10307493 | 732..431 | 1510 | 100 | Minus |
2L | 23513712 | 2L | 10307043..10307119 | 807..731 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-01-31 17:05:32 has no hits.
BS06174.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:17 Download gff for
BS06174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-PA | 1..789 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:40 Download gff for
BS06174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-PA | 1..789 | 17..805 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:16 Download gff for
BS06174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-RA | 118..923 | 6..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:08 Download gff for
BS06174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-RA | 118..923 | 6..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:08 Download gff for
BS06174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10307039..10307119 | 731..812 | 96 | -> | Minus |
2L | 10307194..10307493 | 431..730 | 100 | -> | Minus |
2L | 10307558..10307982 | 6..430 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:16 Download gff for
BS06174.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10307039..10307119 | 731..812 | 96 | -> | Minus |
arm_2L | 10307194..10307493 | 431..730 | 100 | -> | Minus |
arm_2L | 10307558..10307982 | 6..430 | 99 | | Minus |
BS06174.5prime Sequence
819 bp (807 high quality bases) assembled on 2005-12-03
> BS06174.5prime
GAAGTTATCAGTCGACATGGAGCCGTTTACCCATAATGATGGCAATCGCG
ACGAACTAATAATTCAGCAGAAACGGGATATTGAAAAAGAGATCAGCGAC
ACAACTCCCTTGGTCAGCGAGCAGTTGCCACTCACCTGCTTGTATGCGGA
ATACAGTGGCGACGAGATCTTCACCGCCAAGATCCAGGATCTGTCCAAAA
AGTACAAGTTCATTCGCCGCACCCGCCCCGATGGCAATTGTTTCTTCCGA
GCCTTCGCCTACTCCTACTTGGAGTACTTGATCTCAAACACCAGTGCCTA
CCAGGAGTTCAAAAAACTGGCCGAGGAGTCCAAGGAGAAGCTCGTTCAGC
TGGGATTTCCTAGTTTTACATTGGAGGACTTTCACGAAACGTTCATGGAA
GTCATCCAGCGCGTTAGCCCCGACAATGCAGGAGGACACAGCACGGTCCA
AGATGAGTTGCACAAGATCTTCAATGAGCAGGGTTACTCAGACTACGTGG
TGGTTTACCTACGTTTGATCACCTCGGGAAAACTGCAGGAGGAGGCCGAT
TTTTACCAAAATTTCATCGAAGGCGACCTCACCATTGAGGCGTTCCGCCA
TCTGGAAGTGGAGCCGATGTACAAGGAATCGGATCACATCCACATAATCG
CTCTATGCACCGCCCTCGGCGCTGGAGTTCGTGTCGAGTACTTGGACCGT
GGCGAAGGTGGGACTGTGAAGGCCCACGATTTCCCCGAGGGAAGCGAGCC
CCGAATTTACCTGATATATCGACCAGGCCACTACGATATACTGTATCCAA
ATTGAAAGCTTTCTAGACC
BS06174.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4968-PA | 789 | CG4968-RA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:04:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4968-RA | 986 | CG4968-RA | 122..913 | 15..806 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:04:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10307557..10307972 | 391..806 | 2080 | 100 | Plus |
2L | 23513712 | 2L | 10307192..10307493 | 90..391 | 1510 | 100 | Plus |
2L | 23513712 | 2L | 10307043..10307119 | 15..91 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 23:04:40 has no hits.
BS06174.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:18 Download gff for
BS06174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:42 Download gff for
BS06174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-PA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:29:55 Download gff for
BS06174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-RA | 118..923 | 10..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:51:39 Download gff for
BS06174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-RA | 118..923 | 10..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:51:39 Download gff for
BS06174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10307039..10307119 | 10..91 | 96 | -> | Plus |
2L | 10307194..10307493 | 92..391 | 100 | -> | Plus |
2L | 10307558..10307982 | 392..816 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:29:55 Download gff for
BS06174.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10307039..10307119 | 10..91 | 96 | -> | Plus |
arm_2L | 10307194..10307493 | 92..391 | 100 | -> | Plus |
arm_2L | 10307558..10307982 | 392..816 | 99 | | Plus |
BS06174.complete Sequence
821 bp (821 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635385
> BS06174.complete
GAAGTTATCAGTCGACATGGAGCCGTTTACCCATAATGATGGCAATCGCG
ACGAACTAATAATTCAGCAGAAACGGGATATTGAAAAAGAGATCAGCGAC
ACAACTCCCTTGGTCAGCGAGCAGTTGCCACTCACCTGCTTGTATGCGGA
ATACAGTGGCGACGAGATCTTCACCGCCAAGATCCAGGATCTGTCCAAAA
AGTACAAGTTCATTCGCCGCACCCGCCCCGATGGCAATTGTTTCTTCCGA
GCCTTCGCCTACTCCTACTTGGAGTACTTGATCTCAAACACCAGTGCCTA
CCAGGAGTTCAAAAAACTGGCCGAGGAGTCCAAGGAGAAGCTCGTTCAGC
TGGGATTTCCTAGTTTTACATTGGAGGACTTTCACGAAACGTTCATGGAA
GTCATCCAGCGCGTTAGCCCCGACAATGCAGGAGGACACAGCACGGTCCA
AGATGAGTTGCACAAGATCTTCAATGAGCAGGGTTACTCAGACTACGTGG
TGGTTTACCTACGTTTGATCACCTCGGGAAAACTGCAGGAGGAGGCCGAT
TTTTACCAAAATTTCATCGAAGGCGACCTCACCATTGAGGCGTTCCGCCA
TCTGGAAGTGGAGCCGATGTACAAGGAATCGGATCACATCCACATAATCG
CTCTATGCACCGCCCTCGGCGCTGGAGTTCGTGTCGAGTACTTGGACCGT
GGCGAAGGTGGGACTGTGAAGGCCCACGATTTCCCCGAGGGAAGCGAGCC
CCGAATTTACCTGATATATCGACCAGGCCACTACGATATACTGTATCCAA
ATTGAAAGCTTTCTAGACCAT
BS06174.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4968-RA | 789 | CG4968-PA | 1..789 | 17..805 | 3945 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4968-RA | 986 | CG4968-RA | 122..913 | 15..806 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10307557..10307972 | 391..806 | 2080 | 100 | Plus |
2L | 23513712 | 2L | 10307192..10307493 | 90..391 | 1510 | 100 | Plus |
2L | 23513712 | 2L | 10307043..10307119 | 15..91 | 385 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:22:02 has no hits.
BS06174.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:32 Download gff for
BS06174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-RA | 1..789 | 17..805 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:12 Download gff for
BS06174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-RA | 137..942 | 10..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:49 Download gff for
BS06174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-RA | 124..911 | 17..804 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:32 Download gff for
BS06174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-RA | 137..942 | 10..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:54 Download gff for
BS06174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4968-RA | 124..911 | 17..804 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:54 Download gff for
BS06174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10307045..10307119 | 17..91 | 100 | -> | Plus |
2L | 10307194..10307493 | 92..391 | 100 | -> | Plus |
2L | 10307558..10307970 | 392..804 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:49 Download gff for
BS06174.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10307045..10307119 | 17..91 | 100 | -> | Plus |
arm_2L | 10307194..10307493 | 92..391 | 100 | -> | Plus |
arm_2L | 10307558..10307970 | 392..804 | 100 | | Plus |
BS06174.pep Sequence
Translation from 16 to 804
> BS06174.pep
MEPFTHNDGNRDELIIQQKRDIEKEISDTTPLVSEQLPLTCLYAEYSGDE
IFTAKIQDLSKKYKFIRRTRPDGNCFFRAFAYSYLEYLISNTSAYQEFKK
LAEESKEKLVQLGFPSFTLEDFHETFMEVIQRVSPDNAGGHSTVQDELHK
IFNEQGYSDYVVVYLRLITSGKLQEEADFYQNFIEGDLTIEAFRHLEVEP
MYKESDHIHIIALCTALGAGVRVEYLDRGEGGTVKAHDFPEGSEPRIYLI
YRPGHYDILYPN*
BS06174.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4968-PA | 262 | CG4968-PA | 1..262 | 1..262 | 1380 | 100 | Plus |