Clone BS06174 Report

Search the DGRC for BS06174

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptCG4968-RA
Protein status:BS06174.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06174.3prime Sequence

819 bp (818 high quality bases) assembled on 2005-12-03

> BS06174.3prime
ATGGTCTAGAAAGCTTTCAATTTGGATACAGTATATCGTAGTGGCCTGGT
CGATATATCAGGTAAATTCGGGGCTCGCTTCCCTCGGGGAAATCGTGGGC
CTTCACAGTCCCACCTTCGCCACGGTCCAAGTACTCGACACGAACTCCAG
CGCCGAGGGCGGTGCATAGAGCGATTATGTGGATGTGATCCGATTCCTTG
TACATCGGCTCCACTTCCAGATGGCGGAACGCCTCAATGGTGAGGTCGCC
TTCGATGAAATTTTGGTAAAAATCGGCCTCCTCCTGCAGTTTTCCCGAGG
TGATCAAACGTAGGTAAACCACCACGTAGTCTGAGTAACCCTGCTCATTG
AAGATCTTGTGCAACTCATCTTGGACCGTGCTGTGTCCTCCTGCATTGTC
GGGGCTAACGCGCTGGATGACTTCCATGAACGTTTCGTGAAAGTCCTCCA
ATGTAAAACTAGGAAATCCCAGCTGAACGAGCTTCTCCTTGGACTCCTCG
GCCAGTTTTTTGAACTCCTGGTAGGCACTGGTGTTTGAGATCAAGTACTC
CAAGTAGGAGTAGGCGAAGGCTCGGAAGAAACAATTGCCATCGGGGCGGG
TGCGGCGAATGAACTTGTACTTTTTGGACAGATCCTGGATCTTGGCGGTG
AAGATCTCGTCGCCACTGTATTCCGCATACAAGCAGGTGAGTGGCAACTG
CTCGCTGACCAAGGGAGTTGTGTCGCTGATCTCTTTTTCAATATCCCGTT
TCTGCTGAATTATTAGTTCGTCGCGATTGCCATCATTATGGGTAAACGGC
TCCATGTCGACTGATAACT

BS06174.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4968-PA 789 CG4968-RA 1..789 805..17 3945 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:05:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4968-RA 986 CG4968-RA 122..913 807..16 3960 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 17:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10307557..10307972 431..16 2080 100 Minus
2L 23513712 2L 10307192..10307493 732..431 1510 100 Minus
2L 23513712 2L 10307043..10307119 807..731 385 100 Minus
Blast to na_te.dros performed on 2015-01-31 17:05:32 has no hits.

BS06174.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:17 Download gff for BS06174.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4968-PA 1..789 17..805 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:40 Download gff for BS06174.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4968-PA 1..789 17..805 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:30:16 Download gff for BS06174.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4968-RA 118..923 6..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:47:08 Download gff for BS06174.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4968-RA 118..923 6..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:47:08 Download gff for BS06174.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10307039..10307119 731..812 96 -> Minus
2L 10307194..10307493 431..730 100 -> Minus
2L 10307558..10307982 6..430 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:30:16 Download gff for BS06174.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10307039..10307119 731..812 96 -> Minus
arm_2L 10307194..10307493 431..730 100 -> Minus
arm_2L 10307558..10307982 6..430 99   Minus

BS06174.5prime Sequence

819 bp (807 high quality bases) assembled on 2005-12-03

> BS06174.5prime
GAAGTTATCAGTCGACATGGAGCCGTTTACCCATAATGATGGCAATCGCG
ACGAACTAATAATTCAGCAGAAACGGGATATTGAAAAAGAGATCAGCGAC
ACAACTCCCTTGGTCAGCGAGCAGTTGCCACTCACCTGCTTGTATGCGGA
ATACAGTGGCGACGAGATCTTCACCGCCAAGATCCAGGATCTGTCCAAAA
AGTACAAGTTCATTCGCCGCACCCGCCCCGATGGCAATTGTTTCTTCCGA
GCCTTCGCCTACTCCTACTTGGAGTACTTGATCTCAAACACCAGTGCCTA
CCAGGAGTTCAAAAAACTGGCCGAGGAGTCCAAGGAGAAGCTCGTTCAGC
TGGGATTTCCTAGTTTTACATTGGAGGACTTTCACGAAACGTTCATGGAA
GTCATCCAGCGCGTTAGCCCCGACAATGCAGGAGGACACAGCACGGTCCA
AGATGAGTTGCACAAGATCTTCAATGAGCAGGGTTACTCAGACTACGTGG
TGGTTTACCTACGTTTGATCACCTCGGGAAAACTGCAGGAGGAGGCCGAT
TTTTACCAAAATTTCATCGAAGGCGACCTCACCATTGAGGCGTTCCGCCA
TCTGGAAGTGGAGCCGATGTACAAGGAATCGGATCACATCCACATAATCG
CTCTATGCACCGCCCTCGGCGCTGGAGTTCGTGTCGAGTACTTGGACCGT
GGCGAAGGTGGGACTGTGAAGGCCCACGATTTCCCCGAGGGAAGCGAGCC
CCGAATTTACCTGATATATCGACCAGGCCACTACGATATACTGTATCCAA
ATTGAAAGCTTTCTAGACC

BS06174.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4968-PA 789 CG4968-RA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:04:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4968-RA 986 CG4968-RA 122..913 15..806 3960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:04:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10307557..10307972 391..806 2080 100 Plus
2L 23513712 2L 10307192..10307493 90..391 1510 100 Plus
2L 23513712 2L 10307043..10307119 15..91 385 100 Plus
Blast to na_te.dros performed on 2015-02-09 23:04:40 has no hits.

BS06174.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:18 Download gff for BS06174.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4968-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:42 Download gff for BS06174.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4968-PA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:29:55 Download gff for BS06174.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4968-RA 118..923 10..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:51:39 Download gff for BS06174.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4968-RA 118..923 10..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:51:39 Download gff for BS06174.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10307039..10307119 10..91 96 -> Plus
2L 10307194..10307493 92..391 100 -> Plus
2L 10307558..10307982 392..816 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:29:55 Download gff for BS06174.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10307039..10307119 10..91 96 -> Plus
arm_2L 10307194..10307493 92..391 100 -> Plus
arm_2L 10307558..10307982 392..816 99   Plus

BS06174.complete Sequence

821 bp (821 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635385

> BS06174.complete
GAAGTTATCAGTCGACATGGAGCCGTTTACCCATAATGATGGCAATCGCG
ACGAACTAATAATTCAGCAGAAACGGGATATTGAAAAAGAGATCAGCGAC
ACAACTCCCTTGGTCAGCGAGCAGTTGCCACTCACCTGCTTGTATGCGGA
ATACAGTGGCGACGAGATCTTCACCGCCAAGATCCAGGATCTGTCCAAAA
AGTACAAGTTCATTCGCCGCACCCGCCCCGATGGCAATTGTTTCTTCCGA
GCCTTCGCCTACTCCTACTTGGAGTACTTGATCTCAAACACCAGTGCCTA
CCAGGAGTTCAAAAAACTGGCCGAGGAGTCCAAGGAGAAGCTCGTTCAGC
TGGGATTTCCTAGTTTTACATTGGAGGACTTTCACGAAACGTTCATGGAA
GTCATCCAGCGCGTTAGCCCCGACAATGCAGGAGGACACAGCACGGTCCA
AGATGAGTTGCACAAGATCTTCAATGAGCAGGGTTACTCAGACTACGTGG
TGGTTTACCTACGTTTGATCACCTCGGGAAAACTGCAGGAGGAGGCCGAT
TTTTACCAAAATTTCATCGAAGGCGACCTCACCATTGAGGCGTTCCGCCA
TCTGGAAGTGGAGCCGATGTACAAGGAATCGGATCACATCCACATAATCG
CTCTATGCACCGCCCTCGGCGCTGGAGTTCGTGTCGAGTACTTGGACCGT
GGCGAAGGTGGGACTGTGAAGGCCCACGATTTCCCCGAGGGAAGCGAGCC
CCGAATTTACCTGATATATCGACCAGGCCACTACGATATACTGTATCCAA
ATTGAAAGCTTTCTAGACCAT

BS06174.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:22:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4968-RA 789 CG4968-PA 1..789 17..805 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4968-RA 986 CG4968-RA 122..913 15..806 3960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10307557..10307972 391..806 2080 100 Plus
2L 23513712 2L 10307192..10307493 90..391 1510 100 Plus
2L 23513712 2L 10307043..10307119 15..91 385 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:22:02 has no hits.

BS06174.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:32 Download gff for BS06174.complete
Subject Subject Range Query Range Percent Splice Strand
CG4968-RA 1..789 17..805 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:12 Download gff for BS06174.complete
Subject Subject Range Query Range Percent Splice Strand
CG4968-RA 137..942 10..816 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:49 Download gff for BS06174.complete
Subject Subject Range Query Range Percent Splice Strand
CG4968-RA 124..911 17..804 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:32 Download gff for BS06174.complete
Subject Subject Range Query Range Percent Splice Strand
CG4968-RA 137..942 10..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:54 Download gff for BS06174.complete
Subject Subject Range Query Range Percent Splice Strand
CG4968-RA 124..911 17..804 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:54 Download gff for BS06174.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10307045..10307119 17..91 100 -> Plus
2L 10307194..10307493 92..391 100 -> Plus
2L 10307558..10307970 392..804 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:49 Download gff for BS06174.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10307045..10307119 17..91 100 -> Plus
arm_2L 10307194..10307493 92..391 100 -> Plus
arm_2L 10307558..10307970 392..804 100   Plus

BS06174.pep Sequence

Translation from 16 to 804

> BS06174.pep
MEPFTHNDGNRDELIIQQKRDIEKEISDTTPLVSEQLPLTCLYAEYSGDE
IFTAKIQDLSKKYKFIRRTRPDGNCFFRAFAYSYLEYLISNTSAYQEFKK
LAEESKEKLVQLGFPSFTLEDFHETFMEVIQRVSPDNAGGHSTVQDELHK
IFNEQGYSDYVVVYLRLITSGKLQEEADFYQNFIEGDLTIEAFRHLEVEP
MYKESDHIHIIALCTALGAGVRVEYLDRGEGGTVKAHDFPEGSEPRIYLI
YRPGHYDILYPN*

BS06174.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4968-PA 262 CG4968-PA 1..262 1..262 1380 100 Plus