Clone Sequence Records
BS06180.3prime Sequence
696 bp (695 high quality bases) assembled on 2005-12-03
> BS06180.3prime
ATGGTCTAGAAAGCTTTTACTTCCTATACCACATCTGGAGCGTCTTCATC
CGCTTAACCTTCTTCTGCAGCTGCAAAACGCCGTACATGAGCGCCTCGGC
GGTTGGCGGACAACCGGGTACGTATATGTCGACGGGGATTATCCTATCGC
AGCCACGGACGACGGAGTACGAGTAATGGTAGTAGCCGCCGCCGTTGGCA
CAGCTGCCCATGGAGATGACCCAACGTGGCTCGGGCATTTGGTCGTAGAC
CTTTCGCAGGGCCGGTGCCATTTTGTTGGTCAGCGTGCCAGCGACGATGA
TGACATCGGCCTGACGTGGAGATGCACGGAACACAACACCATATCGATCC
ATGTCGTAACGCGGAGCAGCGATGTGCATCATTTCGACGGCACAGCAGGC
CAAACCGAAAGTCAGTGGCCAGATCGAGCCCTTGCGACCCCAGTTGAGCA
GATCGTCCAGTCTGGCCAGTGACCACTCCGCAACGGAGGACTGTTTGGTG
CCGAACGGAGAGTAGCCCTTCTTGGGCAGATTTTGGGCCACTTCGGCAAC
TGGAAGCGTTTGTTGTTGGCGCACCAGGGCCAAATTCAGAGCGGGCAGCG
CCGAAATCGACGCATTCGGTGTCTGAGTCGCCTTTTGGAGAGCCCGGGAC
AGGGTCGATGACATCATCGCCGAACGCAGCATGTCGACTGATAACT
BS06180.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9172-PB | 666 | CG9172-RB | 1..666 | 682..17 | 3330 | 100 | Minus |
CG9172-PA | 666 | CG9172-RA | 1..666 | 682..17 | 3330 | 100 | Minus |
CG2014-PA | 639 | CG2014-RA | 256..338 | 400..318 | 190 | 89.1 | Minus |
CG2014-PA | 639 | CG2014-RA | 581..638 | 75..18 | 140 | 89.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9172-RC | 1282 | CG9172-RC | 77..744 | 684..17 | 3340 | 100 | Minus |
CG9172-RA | 909 | CG9172-RA | 80..747 | 684..17 | 3340 | 100 | Minus |
CG9172-RB | 897 | CG9172-RB | 68..735 | 684..17 | 3340 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15986011..15986678 | 17..684 | 3340 | 100 | Plus |
3R | 32079331 | 3R | 29516034..29516482 | 466..18 | 1090 | 82.9 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:29:48 has no hits.
BS06180.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:22 Download gff for
BS06180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-PA | 1..666 | 17..682 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:49 Download gff for
BS06180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-PA | 1..666 | 17..682 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:01:00 Download gff for
BS06180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-RB | 56..738 | 13..694 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:49:56 Download gff for
BS06180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-RB | 56..738 | 13..694 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:49:56 Download gff for
BS06180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15986008..15986690 | 13..694 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:01:00 Download gff for
BS06180.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15880041..15880723 | 13..694 | 99 | | Plus |
BS06180.5prime Sequence
696 bp (695 high quality bases) assembled on 2005-12-03
> BS06180.5prime
GAAGTTATCAGTCGACATGCTGCGTTCGGCGATGATGTCATCGACCCTGT
CCCGGGCTCTCCAAAAGGCGACTCAGACACCGAATGCGTCGATTTCGGCG
CTGCCCGCTCTGAATTTGGCCCTGGTGCGCCAACAACAAACGCTTCCAGT
TGCCGAAGTGGCCCAAAATCTGCCCAAGAAGGGCTACTCTCCGTTCGGCA
CCAAACAGTCCTCCGTTGCGGAGTGGTCACTGGCCAGACTGGACGATCTG
CTCAACTGGGGTCGCAAGGGCTCGATCTGGCCACTGACTTTCGGTTTGGC
CTGCTGTGCCGTCGAAATGATGCACATCGCTGCTCCGCGTTACGACATGG
ATCGATATGGTGTTGTGTTCCGTGCATCTCCACGTCAGGCCGATGTCATC
ATCGTCGCTGGCACGCTGACCAACAAAATGGCACCGGCCCTGCGAAAGGT
CTACGACCAAATGCCCGAGCCACGTTGGGTCATCTCCATGGGCAGCTGTG
CCAACGGCGGCGGCTACTACCATTACTCGTACTCCGTCGTCCGTGGCTGC
GATAGGATAATCCCCGTCGACATATACGTACCCGGTTGTCCGCCAACCGC
CGAGGCGCTCATGTACGGCGTTTTGCAGCTGCAGAAGAAGGTTAAGCGGA
TGAAGACGCTCCAGATGTGGTATAGGAAGTAAAAGCTTTCTAGACC
BS06180.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9172-PB | 666 | CG9172-RB | 1..666 | 17..682 | 3330 | 100 | Plus |
CG9172-PA | 666 | CG9172-RA | 1..666 | 17..682 | 3330 | 100 | Plus |
CG2014-PA | 639 | CG2014-RA | 256..338 | 299..381 | 190 | 89.1 | Plus |
CG2014-PA | 639 | CG2014-RA | 581..638 | 624..681 | 140 | 89.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:33:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9172-RC | 1282 | CG9172-RC | 77..744 | 15..682 | 3340 | 100 | Plus |
CG9172-RA | 909 | CG9172-RA | 80..747 | 15..682 | 3340 | 100 | Plus |
CG9172-RB | 897 | CG9172-RB | 68..735 | 15..682 | 3340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:33:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15986011..15986678 | 682..15 | 3340 | 100 | Minus |
3R | 32079331 | 3R | 29516034..29516482 | 233..681 | 1090 | 82.9 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:33:41 has no hits.
BS06180.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:23 Download gff for
BS06180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-PA | 1..666 | 17..682 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:51 Download gff for
BS06180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-PA | 1..666 | 17..682 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:40:13 Download gff for
BS06180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-RB | 56..738 | 5..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:47:45 Download gff for
BS06180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-RB | 56..738 | 5..686 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:47:45 Download gff for
BS06180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15986008..15986690 | 5..686 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:40:13 Download gff for
BS06180.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15880041..15880723 | 5..686 | 99 | | Minus |
BS06180.complete Sequence
698 bp (698 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635386
> BS06180.complete
GAAGTTATCAGTCGACATGCTGCGTTCGGCGATGATGTCATCGACCCTGT
CCCGGGCTCTCCAAAAGGCGACTCAGACACCGAATGCGTCGATTTCGGCG
CTGCCCGCTCTGAATTTGGCCCTGGTGCGCCAACAACAAACGCTTCCAGT
TGCCGAAGTGGCCCAAAATCTGCCCAAGAAGGGCTACTCTCCGTTCGGCA
CCAAACAGTCCTCCGTTGCGGAGTGGTCACTGGCCAGACTGGACGATCTG
CTCAACTGGGGTCGCAAGGGCTCGATCTGGCCACTGACTTTCGGTTTGGC
CTGCTGTGCCGTCGAAATGATGCACATCGCTGCTCCGCGTTACGACATGG
ATCGATATGGTGTTGTGTTCCGTGCATCTCCACGTCAGGCCGATGTCATC
ATCGTCGCTGGCACGCTGACCAACAAAATGGCACCGGCCCTGCGAAAGGT
CTACGACCAAATGCCCGAGCCACGTTGGGTCATCTCCATGGGCAGCTGTG
CCAACGGCGGCGGCTACTACCATTACTCGTACTCCGTCGTCCGTGGCTGC
GATAGGATAATCCCCGTCGACATATACGTACCCGGTTGTCCGCCAACCGC
CGAGGCGCTCATGTACGGCGTTTTGCAGCTGCAGAAGAAGGTTAAGCGGA
TGAAGACGCTCCAGATGTGGTATAGGAAGTAAAAGCTTTCTAGACCAT
BS06180.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9172-RC | 666 | CG9172-PC | 1..666 | 17..682 | 3330 | 100 | Plus |
CG9172-RA | 666 | CG9172-PA | 1..666 | 17..682 | 3330 | 100 | Plus |
CG9172-RB | 666 | CG9172-PB | 1..666 | 17..682 | 3330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9172-RC | 1282 | CG9172-RC | 77..744 | 15..682 | 3340 | 100 | Plus |
CG9172-RA | 909 | CG9172-RA | 80..747 | 15..682 | 3340 | 100 | Plus |
CG9172-RB | 897 | CG9172-RB | 68..735 | 15..682 | 3340 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 15986011..15986678 | 682..15 | 3340 | 100 | Minus |
3R | 32079331 | 3R | 29516034..29516482 | 233..681 | 1090 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:34:23 has no hits.
BS06180.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:29 Download gff for
BS06180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-RA | 1..666 | 17..682 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:51 Download gff for
BS06180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-RA | 19..700 | 6..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:10 Download gff for
BS06180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-RB | 70..733 | 17..680 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:30 Download gff for
BS06180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-RA | 19..700 | 6..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:09 Download gff for
BS06180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9172-RB | 70..733 | 17..680 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:09 Download gff for
BS06180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 15986013..15986676 | 17..680 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:10 Download gff for
BS06180.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15880046..15880709 | 17..680 | 100 | | Minus |
BS06180.pep Sequence
Translation from 16 to 681
> BS06180.pep
MLRSAMMSSTLSRALQKATQTPNASISALPALNLALVRQQQTLPVAEVAQ
NLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSIWPLTFGLACCAVE
MMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQMP
EPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMY
GVLQLQKKVKRMKTLQMWYRK*
BS06180.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9172-PC | 221 | CG9172-PC | 1..221 | 1..221 | 1158 | 100 | Plus |
CG9172-PA | 221 | CG9172-PA | 1..221 | 1..221 | 1158 | 100 | Plus |
CG9172-PB | 221 | CG9172-PB | 1..221 | 1..221 | 1158 | 100 | Plus |
CG2014-PB | 212 | CG2014-PB | 27..212 | 37..221 | 873 | 85.5 | Plus |
CG2014-PA | 212 | CG2014-PA | 27..212 | 37..221 | 873 | 85.5 | Plus |