Clone BS06180 Report

Search the DGRC for BS06180

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG9172-RA
Protein status:BS06180.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06180.3prime Sequence

696 bp (695 high quality bases) assembled on 2005-12-03

> BS06180.3prime
ATGGTCTAGAAAGCTTTTACTTCCTATACCACATCTGGAGCGTCTTCATC
CGCTTAACCTTCTTCTGCAGCTGCAAAACGCCGTACATGAGCGCCTCGGC
GGTTGGCGGACAACCGGGTACGTATATGTCGACGGGGATTATCCTATCGC
AGCCACGGACGACGGAGTACGAGTAATGGTAGTAGCCGCCGCCGTTGGCA
CAGCTGCCCATGGAGATGACCCAACGTGGCTCGGGCATTTGGTCGTAGAC
CTTTCGCAGGGCCGGTGCCATTTTGTTGGTCAGCGTGCCAGCGACGATGA
TGACATCGGCCTGACGTGGAGATGCACGGAACACAACACCATATCGATCC
ATGTCGTAACGCGGAGCAGCGATGTGCATCATTTCGACGGCACAGCAGGC
CAAACCGAAAGTCAGTGGCCAGATCGAGCCCTTGCGACCCCAGTTGAGCA
GATCGTCCAGTCTGGCCAGTGACCACTCCGCAACGGAGGACTGTTTGGTG
CCGAACGGAGAGTAGCCCTTCTTGGGCAGATTTTGGGCCACTTCGGCAAC
TGGAAGCGTTTGTTGTTGGCGCACCAGGGCCAAATTCAGAGCGGGCAGCG
CCGAAATCGACGCATTCGGTGTCTGAGTCGCCTTTTGGAGAGCCCGGGAC
AGGGTCGATGACATCATCGCCGAACGCAGCATGTCGACTGATAACT

BS06180.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG9172-PB 666 CG9172-RB 1..666 682..17 3330 100 Minus
CG9172-PA 666 CG9172-RA 1..666 682..17 3330 100 Minus
CG2014-PA 639 CG2014-RA 256..338 400..318 190 89.1 Minus
CG2014-PA 639 CG2014-RA 581..638 75..18 140 89.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:29:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG9172-RC 1282 CG9172-RC 77..744 684..17 3340 100 Minus
CG9172-RA 909 CG9172-RA 80..747 684..17 3340 100 Minus
CG9172-RB 897 CG9172-RB 68..735 684..17 3340 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15986011..15986678 17..684 3340 100 Plus
3R 32079331 3R 29516034..29516482 466..18 1090 82.9 Minus
Blast to na_te.dros performed on 2015-02-03 13:29:48 has no hits.

BS06180.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:22 Download gff for BS06180.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9172-PA 1..666 17..682 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:49 Download gff for BS06180.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9172-PA 1..666 17..682 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 05:01:00 Download gff for BS06180.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9172-RB 56..738 13..694 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:49:56 Download gff for BS06180.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9172-RB 56..738 13..694 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:49:56 Download gff for BS06180.3prime
Subject Subject Range Query Range Percent Splice Strand
X 15986008..15986690 13..694 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 05:01:00 Download gff for BS06180.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15880041..15880723 13..694 99   Plus

BS06180.5prime Sequence

696 bp (695 high quality bases) assembled on 2005-12-03

> BS06180.5prime
GAAGTTATCAGTCGACATGCTGCGTTCGGCGATGATGTCATCGACCCTGT
CCCGGGCTCTCCAAAAGGCGACTCAGACACCGAATGCGTCGATTTCGGCG
CTGCCCGCTCTGAATTTGGCCCTGGTGCGCCAACAACAAACGCTTCCAGT
TGCCGAAGTGGCCCAAAATCTGCCCAAGAAGGGCTACTCTCCGTTCGGCA
CCAAACAGTCCTCCGTTGCGGAGTGGTCACTGGCCAGACTGGACGATCTG
CTCAACTGGGGTCGCAAGGGCTCGATCTGGCCACTGACTTTCGGTTTGGC
CTGCTGTGCCGTCGAAATGATGCACATCGCTGCTCCGCGTTACGACATGG
ATCGATATGGTGTTGTGTTCCGTGCATCTCCACGTCAGGCCGATGTCATC
ATCGTCGCTGGCACGCTGACCAACAAAATGGCACCGGCCCTGCGAAAGGT
CTACGACCAAATGCCCGAGCCACGTTGGGTCATCTCCATGGGCAGCTGTG
CCAACGGCGGCGGCTACTACCATTACTCGTACTCCGTCGTCCGTGGCTGC
GATAGGATAATCCCCGTCGACATATACGTACCCGGTTGTCCGCCAACCGC
CGAGGCGCTCATGTACGGCGTTTTGCAGCTGCAGAAGAAGGTTAAGCGGA
TGAAGACGCTCCAGATGTGGTATAGGAAGTAAAAGCTTTCTAGACC

BS06180.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG9172-PB 666 CG9172-RB 1..666 17..682 3330 100 Plus
CG9172-PA 666 CG9172-RA 1..666 17..682 3330 100 Plus
CG2014-PA 639 CG2014-RA 256..338 299..381 190 89.1 Plus
CG2014-PA 639 CG2014-RA 581..638 624..681 140 89.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:33:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9172-RC 1282 CG9172-RC 77..744 15..682 3340 100 Plus
CG9172-RA 909 CG9172-RA 80..747 15..682 3340 100 Plus
CG9172-RB 897 CG9172-RB 68..735 15..682 3340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:33:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15986011..15986678 682..15 3340 100 Minus
3R 32079331 3R 29516034..29516482 233..681 1090 82.9 Plus
Blast to na_te.dros performed on 2015-02-02 11:33:41 has no hits.

BS06180.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:23 Download gff for BS06180.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9172-PA 1..666 17..682 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:51 Download gff for BS06180.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9172-PA 1..666 17..682 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:40:13 Download gff for BS06180.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9172-RB 56..738 5..686 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:47:45 Download gff for BS06180.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9172-RB 56..738 5..686 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:47:45 Download gff for BS06180.5prime
Subject Subject Range Query Range Percent Splice Strand
X 15986008..15986690 5..686 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:40:13 Download gff for BS06180.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15880041..15880723 5..686 99   Minus

BS06180.complete Sequence

698 bp (698 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635386

> BS06180.complete
GAAGTTATCAGTCGACATGCTGCGTTCGGCGATGATGTCATCGACCCTGT
CCCGGGCTCTCCAAAAGGCGACTCAGACACCGAATGCGTCGATTTCGGCG
CTGCCCGCTCTGAATTTGGCCCTGGTGCGCCAACAACAAACGCTTCCAGT
TGCCGAAGTGGCCCAAAATCTGCCCAAGAAGGGCTACTCTCCGTTCGGCA
CCAAACAGTCCTCCGTTGCGGAGTGGTCACTGGCCAGACTGGACGATCTG
CTCAACTGGGGTCGCAAGGGCTCGATCTGGCCACTGACTTTCGGTTTGGC
CTGCTGTGCCGTCGAAATGATGCACATCGCTGCTCCGCGTTACGACATGG
ATCGATATGGTGTTGTGTTCCGTGCATCTCCACGTCAGGCCGATGTCATC
ATCGTCGCTGGCACGCTGACCAACAAAATGGCACCGGCCCTGCGAAAGGT
CTACGACCAAATGCCCGAGCCACGTTGGGTCATCTCCATGGGCAGCTGTG
CCAACGGCGGCGGCTACTACCATTACTCGTACTCCGTCGTCCGTGGCTGC
GATAGGATAATCCCCGTCGACATATACGTACCCGGTTGTCCGCCAACCGC
CGAGGCGCTCATGTACGGCGTTTTGCAGCTGCAGAAGAAGGTTAAGCGGA
TGAAGACGCTCCAGATGTGGTATAGGAAGTAAAAGCTTTCTAGACCAT

BS06180.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9172-RC 666 CG9172-PC 1..666 17..682 3330 100 Plus
CG9172-RA 666 CG9172-PA 1..666 17..682 3330 100 Plus
CG9172-RB 666 CG9172-PB 1..666 17..682 3330 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:34:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG9172-RC 1282 CG9172-RC 77..744 15..682 3340 100 Plus
CG9172-RA 909 CG9172-RA 80..747 15..682 3340 100 Plus
CG9172-RB 897 CG9172-RB 68..735 15..682 3340 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:34:22
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 15986011..15986678 682..15 3340 100 Minus
3R 32079331 3R 29516034..29516482 233..681 1090 82.9 Plus
Blast to na_te.dros performed on 2014-11-27 15:34:23 has no hits.

BS06180.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:49:29 Download gff for BS06180.complete
Subject Subject Range Query Range Percent Splice Strand
CG9172-RA 1..666 17..682 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:37:51 Download gff for BS06180.complete
Subject Subject Range Query Range Percent Splice Strand
CG9172-RA 19..700 6..686 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:10 Download gff for BS06180.complete
Subject Subject Range Query Range Percent Splice Strand
CG9172-RB 70..733 17..680 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:49:30 Download gff for BS06180.complete
Subject Subject Range Query Range Percent Splice Strand
CG9172-RA 19..700 6..686 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:09 Download gff for BS06180.complete
Subject Subject Range Query Range Percent Splice Strand
CG9172-RB 70..733 17..680 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:09 Download gff for BS06180.complete
Subject Subject Range Query Range Percent Splice Strand
X 15986013..15986676 17..680 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:10 Download gff for BS06180.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 15880046..15880709 17..680 100   Minus

BS06180.pep Sequence

Translation from 16 to 681

> BS06180.pep
MLRSAMMSSTLSRALQKATQTPNASISALPALNLALVRQQQTLPVAEVAQ
NLPKKGYSPFGTKQSSVAEWSLARLDDLLNWGRKGSIWPLTFGLACCAVE
MMHIAAPRYDMDRYGVVFRASPRQADVIIVAGTLTNKMAPALRKVYDQMP
EPRWVISMGSCANGGGYYHYSYSVVRGCDRIIPVDIYVPGCPPTAEALMY
GVLQLQKKVKRMKTLQMWYRK*

BS06180.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:42:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG9172-PC 221 CG9172-PC 1..221 1..221 1158 100 Plus
CG9172-PA 221 CG9172-PA 1..221 1..221 1158 100 Plus
CG9172-PB 221 CG9172-PB 1..221 1..221 1158 100 Plus
CG2014-PB 212 CG2014-PB 27..212 37..221 873 85.5 Plus
CG2014-PA 212 CG2014-PA 27..212 37..221 873 85.5 Plus