Clone Sequence Records
BS06181.3prime Sequence
876 bp (836 high quality bases) assembled on 2005-12-03
> BS06181.3prime
ATGGTCTAGAAAGCTTCTAGCTAGCGATCTTAACTATTTCACCCTCGACT
TCCAAGGAATCGGCGAGCTTAAGTTGCTTATCAAAGCGTTTCTGAAACTT
CTTCGCCTGTTTTTCGTTCAAATCCTCGACGGACAGATGCTTGGCATACT
TCTTGAGCAGCTTCTTACGAAGTTTTTCCAGGAAAATGCCATCTGCTTGC
TTGGTAACGATCTTAGTTAGCTGGGCGGCCCAATCAAAGTCGCTGGTCAC
GCCGTTGGAGGTCTCCTCGGCAGCAGCATCTTCTGTGGTCTCCACTTTGG
CCTTCTTCTTGGGTGGCGCCTCTTCCTCGACCTCTGCCTTCTGCTTCTGC
TGTATTTCAGCAATCTTTTCCGCCTTGGCTCTGGCCAGCTCCGCTTGCTT
TGCCTCCTTCATCTTGTTCAGCTCCTTCTCGAGAATATCCCACACCTGGG
TGGCCTGGTTGCGGGGCATGCGCATGCAGTTTCCCACGAAGTTTTCGAAC
TTAGCCTTCTTGCGGGGCACGTTGTCGACGCTCTGGAGCTTTTGGAAGGC
GGATCGAACGGCTGGAGTTAAATTGTACTCGCTGCTGTCGAGGATCGACC
GAATGATGTCCATCCAACTCTCTTGCTTTTGAGCGTTCTTGTTGCGGGGC
TCCTTGGCGGCAAAGCCTTGGCTTTGGCTGGCGTACTTCTGGGCCTCTGA
GATGCACTTAATGTGTGCCACATACTCCTCGCCATAGAAGTCCTTTANGC
AGTCCATGCAGGACACGTTCTTGTCTTTGCCGCGACAGCGCGTCTGGTAG
TGCTTTTCCACCGCCGGTTTCTTTACCGACTCGCCGCAGATGTTGCACGT
GAAGAAGACCATGTCGACTGATAACT
BS06181.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12909-PA | 846 | CG12909-RA | 1..846 | 862..17 | 4211 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:23:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12909-RA | 1031 | CG12909-RA | 122..968 | 863..17 | 4224 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:23:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10310234..10311080 | 863..17 | 4224 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:23:53 has no hits.
BS06181.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:24 Download gff for
BS06181.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-PA | 1..846 | 17..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:52 Download gff for
BS06181.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-PA | 1..846 | 17..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:50:32 Download gff for
BS06181.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-RA | 119..968 | 17..870 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:35 Download gff for
BS06181.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-RA | 119..968 | 17..870 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:35 Download gff for
BS06181.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10310231..10311080 | 17..870 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:50:32 Download gff for
BS06181.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6197736..6198585 | 17..870 | 99 | | Minus |
BS06181.5prime Sequence
876 bp (784 high quality bases) assembled on 2005-12-03
> BS06181.5prime
GAAGTTATCAGTCGACATGGTCTTCTTCACGTGCAACATCTGCGGCGAGT
CGGTAAAGAAACCGGCGGTGGAAAAGCACTACCAGACGCGCTGTCGCGGC
AAAGACAAGAACGTGTCCTGCATGGACTGCCTAAAGGACTTCTATGGCGA
GGAGTATGTGGCACACATTAAGTGCATCTCAGAGGCCCAGAAGTACGCCA
GCCAAAGCCAAGGCTTTGCCGCCAAGGAGCCCCGCAACAAGAACGCTCAA
AAGCAAGAGAGTTGGATGGACATCATTCGGTCGATCCTCGACAGCAGCGA
GTACAATTTAACTCCAGCCGTTCGATCCGCCTTCCAAAAGCTCCAGAGCG
TCGACAACGTGCCCCGCAAGAAGGCTAAGTTCGAAAACTTCGTGGGAAAC
TGCATGCGCATGCCCCGCAACCAGGCCACCCAGGTGTGGGATATTCTCGA
GAAGGAGCTGAACAAGATGAAGGAGGCAAAGCAAGCGGAGCTGGCCAGAG
CCAAGGCGGAAAAGATTGCTGAAATACAGCAGAAGCAGAAGGCAGAGGTC
GAGGAAGAGGCGCCACCCAAGAAGAAGGCCAAAGTGGAGACCACAGAAGA
TGCTGCTGCCGAGGAGACCTCCAACGGCGTGACCAGCGACTTTGATTGGG
CCGCCCAGCTAACTAAGATCGTTACCAAGCAAGCAGATGGCATTTTCCTG
GAAAAACTTCGTAAGAAGCTGCTCAAGAAGTATGCCAAGCATCTGTCCGT
CGAGGATTTGAACGAAAAACAGGCGAAGAAGTTTCAGAAACGCTTTGATA
AGCAACTTAAGCTCGCCGATTCCTTGGAAGTCGAGGGTGAAATAGTTAAG
ATCGCTAGCTAGAAGCTTTCTAGACC
BS06181.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12909-PA | 846 | CG12909-RA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:40:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12909-RA | 1031 | CG12909-RA | 122..968 | 16..862 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:40:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10310234..10311080 | 16..862 | 4235 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:40:50 has no hits.
BS06181.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:25 Download gff for
BS06181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:54 Download gff for
BS06181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-PA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:24:33 Download gff for
BS06181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-RA | 119..968 | 9..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:35 Download gff for
BS06181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-RA | 119..968 | 9..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:35 Download gff for
BS06181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10310231..10311080 | 9..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:24:33 Download gff for
BS06181.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6197736..6198585 | 9..862 | 99 | | Plus |
BS06181.complete Sequence
878 bp (878 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635387
> BS06181.complete
GAAGTTATCAGTCGACATGGTCTTCTTCACGTGCAACATCTGCGGCGAGT
CGGTAAAGAAACCGGCGGTGGAAAAGCACTACCAGACGCGCTGTCGCGGC
AAAGACAAGAACGTGTCCTGCATGGACTGCCTAAAGGACTTCTATGGCGA
GGAGTATGTGGCACACATTAAGTGCATCTCAGAGGCCCAGAAGTACGCCA
GCCAAAGCCAAGGCTTTGCCGCCAAGGAGCCCCGCAACAAGAACGCTCAA
AAGCAAGAGAGTTGGATGGACATCATTCGGTCGATCCTCGACAGCAGCGA
GTACAATTTAACTCCAGCCGTTCGATCCGCCTTCCAAAAGCTCCAGAGCG
TCGACAACGTGCCCCGCAAGAAGGCTAAGTTCGAAAACTTCGTGGGAAAC
TGCATGCGCATGCCCCGCAACCAGGCCACCCAGGTGTGGGATATTCTCGA
GAAGGAGCTGAACAAGATGAAGGAGGCAAAGCAAGCGGAGCTGGCCAGAG
CCAAGGCGGAAAAGATTGCTGAAATACAGCAGAAGCAGAAGGCAGAGGTC
GAGGAAGAGGCGCCACCCAAGAAGAAGGCCAAAGTGGAGACCACAGAAGA
TGCTGCTGCCGAGGAGACCTCCAACGGCGTGACCAGCGACTTTGATTGGG
CCGCCCAGCTAACTAAGATCGTTACCAAGCAAGCAGATGGCATTTTCCTG
GAAAAACTTCGTAAGAAGCTGCTCAAGAAGTATGCCAAGCATCTGTCCGT
CGAGGATTTGAACGAAAAACAGGCGAAGAAGTTTCAGAAACGCTTTGATA
AGCAACTTAAGCTCGCCGATTCCTTGGAAGTCGAGGGTGAAATAGTTAAG
ATCGCTAGCTAGAAGCTTTCTAGACCAT
BS06181.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:54:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12909-RA | 846 | CG12909-PA | 1..846 | 17..862 | 4230 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:54:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12909-RA | 1031 | CG12909-RA | 122..968 | 16..862 | 4235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10310234..10311080 | 16..862 | 4235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:54:51 has no hits.
BS06181.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:33 Download gff for
BS06181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-RA | 1..846 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:14 Download gff for
BS06181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-RA | 108..957 | 9..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:55 Download gff for
BS06181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-RA | 123..968 | 17..862 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:33 Download gff for
BS06181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-RA | 108..957 | 9..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:29:57 Download gff for
BS06181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12909-RA | 123..968 | 17..862 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:29:57 Download gff for
BS06181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10310235..10311080 | 17..862 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:55 Download gff for
BS06181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6197740..6198585 | 17..862 | 100 | | Plus |
BS06181.pep Sequence
Translation from 16 to 861
> BS06181.pep
MVFFTCNICGESVKKPAVEKHYQTRCRGKDKNVSCMDCLKDFYGEEYVAH
IKCISEAQKYASQSQGFAAKEPRNKNAQKQESWMDIIRSILDSSEYNLTP
AVRSAFQKLQSVDNVPRKKAKFENFVGNCMRMPRNQATQVWDILEKELNK
MKEAKQAELARAKAEKIAEIQQKQKAEVEEEAPPKKKAKVETTEDAAAEE
TSNGVTSDFDWAAQLTKIVTKQADGIFLEKLRKKLLKKYAKHLSVEDLNE
KQAKKFQKRFDKQLKLADSLEVEGEIVKIAS*
BS06181.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12909-PA | 281 | CG12909-PA | 1..281 | 1..281 | 1438 | 100 | Plus |
