Clone BS06182 Report

Search the DGRC for BS06182

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:82
Vector:pDNR-Dual
Associated Gene/TranscriptRpS9-RB
Protein status:BS06182.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06182.3prime Sequence

444 bp (443 high quality bases) assembled on 2005-12-03

> BS06182.3prime
ATGGTCTAGAAAGCTTTTACCGAATGTGACGCTGACGGATCAGGACGCGA
GCATGATGGATGGACTTGGCAAGTCCCAGCTTGAACACCTGCGTCTGCAG
ACGACGCTCCAAGAAGTCCTCAATCTTCAGACCCAGCACGTAATCGAGCT
TCATGCGGGACTCGTCCAGGACACCGATACGGACCAGACGGCGCAGCAGG
GCATTACCCTGGAACAGACGCTTCTCGTCCTTCTCGTCGAGGGTCAGCAG
CTCACGAGCGGCCTTACGGATCTTAGCCAGGGCGTACTTGACGCGCCACA
CTTCGCGCTTGTTGCGCAGACCATACTCGCCGATGATCTTCAACTCCTGG
TCCAGACGCGCCTTCTCATAGGGGCGACGGGGAGTCACGTAGGTCTTCGA
GAAGACCGAGGGTATGCGGCCGTTCACCATGTCGACTGATAACT

BS06182.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3395-PB 414 RpS9-RB 1..414 430..17 2070 100 Minus
CG3395-PA 588 RpS9-RA 1..410 430..21 2050 100 Minus
CG3395-PD 588 RpS9-RD 1..410 430..21 2050 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:25:33
Subject Length Description Subject Range Query Range Score Percent Strand
RpS9-RB 917 CG3395-RB 55..470 431..16 2080 100 Minus
RpS9-RE 803 CG3395-RE 27..437 431..21 2055 100 Minus
RpS9-RD 706 CG3395-RD 27..437 431..21 2055 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:25:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9511052..9511279 204..431 1140 100 Plus
3L 28110227 3L 9510460..9510652 16..208 965 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:25:29 has no hits.

BS06182.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:26 Download gff for BS06182.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS9-PB 1..414 17..430 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:55 Download gff for BS06182.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3395-PB 1..414 17..430 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:50:44 Download gff for BS06182.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS9-RB 55..470 16..431 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:48 Download gff for BS06182.3prime
Subject Subject Range Query Range Percent Splice Strand
RpS9-RB 55..470 16..431 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:48 Download gff for BS06182.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9510460..9510651 16..207 100 <- Plus
3L 9511056..9511279 208..431 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:50:44 Download gff for BS06182.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9503560..9503751 16..207 100 <- Plus
arm_3L 9504156..9504379 208..431 100   Plus

BS06182.5prime Sequence

444 bp (443 high quality bases) assembled on 2005-12-03

> BS06182.5prime
GAAGTTATCAGTCGACATGGTGAACGGCCGCATACCCTCGGTCTTCTCGA
AGACCTACGTGACTCCCCGTCGCCCCTATGAGAAGGCGCGTCTGGACCAG
GAGTTGAAGATCATCGGCGAGTATGGTCTGCGCAACAAGCGCGAAGTGTG
GCGCGTCAAGTACGCCCTGGCTAAGATCCGTAAGGCCGCTCGTGAGCTGC
TGACCCTCGACGAGAAGGACGAGAAGCGTCTGTTCCAGGGTAATGCCCTG
CTGCGCCGTCTGGTCCGTATCGGTGTCCTGGACGAGTCCCGCATGAAGCT
CGATTACGTGCTGGGTCTGAAGATTGAGGACTTCTTGGAGCGTCGTCTGC
AGACGCAGGTGTTCAAGCTGGGACTTGCCAAGTCCATCCATCATGCTCGC
GTCCTGATCCGTCAGCGTCACATTCGGTAAAAGCTTTCTAGACC

BS06182.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG3395-PB 414 RpS9-RB 1..414 17..430 2070 100 Plus
CG3395-PA 588 RpS9-RA 1..410 17..426 2050 100 Plus
CG3395-PD 588 RpS9-RD 1..410 17..426 2050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
RpS9-RB 917 CG3395-RB 55..470 16..431 2080 100 Plus
RpS9-RE 803 CG3395-RE 27..437 16..426 2055 100 Plus
RpS9-RD 706 CG3395-RD 27..437 16..426 2055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:36:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9511052..9511279 243..16 1140 100 Minus
3L 28110227 3L 9510460..9510652 431..239 965 100 Minus
Blast to na_te.dros performed on 2015-02-02 11:36:28 has no hits.

BS06182.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:27 Download gff for BS06182.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS9-PB 1..414 17..430 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:56 Download gff for BS06182.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3395-PB 1..414 17..430 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:40:45 Download gff for BS06182.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS9-RB 55..470 16..431 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:48:11 Download gff for BS06182.5prime
Subject Subject Range Query Range Percent Splice Strand
RpS9-RB 55..470 16..431 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:48:11 Download gff for BS06182.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9510460..9510651 240..431 100 <- Minus
3L 9511056..9511279 16..239 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:40:45 Download gff for BS06182.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9503560..9503751 240..431 100 <- Minus
arm_3L 9504156..9504379 16..239 100   Minus

BS06182.complete Sequence

446 bp (446 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635388

> BS06182.complete
GAAGTTATCAGTCGACATGGTGAACGGCCGCATACCCTCGGTCTTCTCGA
AGACCTACGTGACTCCCCGTCGCCCCTATGAGAAGGCGCGTCTGGACCAG
GAGTTGAAGATCATCGGCGAGTATGGTCTGCGCAACAAGCGCGAAGTGTG
GCGCGTCAAGTACGCCCTGGCTAAGATCCGTAAGGCCGCTCGTGAGCTGC
TGACCCTCGACGAGAAGGACGAGAAGCGTCTGTTCCAGGGTAATGCCCTG
CTGCGCCGTCTGGTCCGTATCGGTGTCCTGGACGAGTCCCGCATGAAGCT
CGATTACGTGCTGGGTCTGAAGATTGAGGACTTCTTGGAGCGTCGTCTGC
AGACGCAGGTGTTCAAGCTGGGACTTGCCAAGTCCATCCATCATGCTCGC
GTCCTGATCCGTCAGCGTCACATTCGGTAAAAGCTTTCTAGACCAT

BS06182.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
RpS9-RB 414 CG3395-PB 1..414 17..430 2070 100 Plus
RpS9-RE 588 CG3395-PE 1..410 17..426 2050 100 Plus
RpS9-RD 588 CG3395-PD 1..410 17..426 2050 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:14
Subject Length Description Subject Range Query Range Score Percent Strand
RpS9-RB 917 CG3395-RB 55..470 16..431 2080 100 Plus
RpS9-RE 803 CG3395-RE 27..437 16..426 2055 100 Plus
RpS9-RD 706 CG3395-RD 27..437 16..426 2055 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9511052..9511279 243..16 1140 100 Minus
3L 28110227 3L 9510460..9510652 431..239 965 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:51:11 has no hits.

BS06182.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:14 Download gff for BS06182.complete
Subject Subject Range Query Range Percent Splice Strand
RpS9-RB 1..414 17..430 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:59 Download gff for BS06182.complete
Subject Subject Range Query Range Percent Splice Strand
RpS9-RB 66..481 16..431 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:52 Download gff for BS06182.complete
Subject Subject Range Query Range Percent Splice Strand
RpS9-RB 56..467 17..428 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:15 Download gff for BS06182.complete
Subject Subject Range Query Range Percent Splice Strand
RpS9-RB 66..481 16..431 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:44 Download gff for BS06182.complete
Subject Subject Range Query Range Percent Splice Strand
RpS9-RB 56..467 17..428 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:44 Download gff for BS06182.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9510463..9510651 240..428 100 <- Minus
3L 9511056..9511278 17..239 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:52 Download gff for BS06182.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9503563..9503751 240..428 100 <- Minus
arm_3L 9504156..9504378 17..239 100   Minus

BS06182.pep Sequence

Translation from 16 to 429

> BS06182.pep
MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYA
LAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLG
LKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIR*

BS06182.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
RpS9-PB 137 CG3395-PB 1..137 1..137 685 100 Plus
RpS9-PE 195 CG3395-PE 1..137 1..137 685 100 Plus
RpS9-PD 195 CG3395-PD 1..137 1..137 685 100 Plus
RpS9-PA 195 CG3395-PA 1..137 1..137 685 100 Plus