Clone Sequence Records
BS06182.3prime Sequence
444 bp (443 high quality bases) assembled on 2005-12-03
> BS06182.3prime
ATGGTCTAGAAAGCTTTTACCGAATGTGACGCTGACGGATCAGGACGCGA
GCATGATGGATGGACTTGGCAAGTCCCAGCTTGAACACCTGCGTCTGCAG
ACGACGCTCCAAGAAGTCCTCAATCTTCAGACCCAGCACGTAATCGAGCT
TCATGCGGGACTCGTCCAGGACACCGATACGGACCAGACGGCGCAGCAGG
GCATTACCCTGGAACAGACGCTTCTCGTCCTTCTCGTCGAGGGTCAGCAG
CTCACGAGCGGCCTTACGGATCTTAGCCAGGGCGTACTTGACGCGCCACA
CTTCGCGCTTGTTGCGCAGACCATACTCGCCGATGATCTTCAACTCCTGG
TCCAGACGCGCCTTCTCATAGGGGCGACGGGGAGTCACGTAGGTCTTCGA
GAAGACCGAGGGTATGCGGCCGTTCACCATGTCGACTGATAACT
BS06182.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3395-PB | 414 | RpS9-RB | 1..414 | 430..17 | 2070 | 100 | Minus |
CG3395-PA | 588 | RpS9-RA | 1..410 | 430..21 | 2050 | 100 | Minus |
CG3395-PD | 588 | RpS9-RD | 1..410 | 430..21 | 2050 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:25:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS9-RB | 917 | CG3395-RB | 55..470 | 431..16 | 2080 | 100 | Minus |
RpS9-RE | 803 | CG3395-RE | 27..437 | 431..21 | 2055 | 100 | Minus |
RpS9-RD | 706 | CG3395-RD | 27..437 | 431..21 | 2055 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:25:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9511052..9511279 | 204..431 | 1140 | 100 | Plus |
3L | 28110227 | 3L | 9510460..9510652 | 16..208 | 965 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:25:29 has no hits.
BS06182.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:26 Download gff for
BS06182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-PB | 1..414 | 17..430 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:55 Download gff for
BS06182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3395-PB | 1..414 | 17..430 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:50:44 Download gff for
BS06182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RB | 55..470 | 16..431 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:48 Download gff for
BS06182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RB | 55..470 | 16..431 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:48 Download gff for
BS06182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9510460..9510651 | 16..207 | 100 | <- | Plus |
3L | 9511056..9511279 | 208..431 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:50:44 Download gff for
BS06182.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9503560..9503751 | 16..207 | 100 | <- | Plus |
arm_3L | 9504156..9504379 | 208..431 | 100 | | Plus |
BS06182.5prime Sequence
444 bp (443 high quality bases) assembled on 2005-12-03
> BS06182.5prime
GAAGTTATCAGTCGACATGGTGAACGGCCGCATACCCTCGGTCTTCTCGA
AGACCTACGTGACTCCCCGTCGCCCCTATGAGAAGGCGCGTCTGGACCAG
GAGTTGAAGATCATCGGCGAGTATGGTCTGCGCAACAAGCGCGAAGTGTG
GCGCGTCAAGTACGCCCTGGCTAAGATCCGTAAGGCCGCTCGTGAGCTGC
TGACCCTCGACGAGAAGGACGAGAAGCGTCTGTTCCAGGGTAATGCCCTG
CTGCGCCGTCTGGTCCGTATCGGTGTCCTGGACGAGTCCCGCATGAAGCT
CGATTACGTGCTGGGTCTGAAGATTGAGGACTTCTTGGAGCGTCGTCTGC
AGACGCAGGTGTTCAAGCTGGGACTTGCCAAGTCCATCCATCATGCTCGC
GTCCTGATCCGTCAGCGTCACATTCGGTAAAAGCTTTCTAGACC
BS06182.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3395-PB | 414 | RpS9-RB | 1..414 | 17..430 | 2070 | 100 | Plus |
CG3395-PA | 588 | RpS9-RA | 1..410 | 17..426 | 2050 | 100 | Plus |
CG3395-PD | 588 | RpS9-RD | 1..410 | 17..426 | 2050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS9-RB | 917 | CG3395-RB | 55..470 | 16..431 | 2080 | 100 | Plus |
RpS9-RE | 803 | CG3395-RE | 27..437 | 16..426 | 2055 | 100 | Plus |
RpS9-RD | 706 | CG3395-RD | 27..437 | 16..426 | 2055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:36:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9511052..9511279 | 243..16 | 1140 | 100 | Minus |
3L | 28110227 | 3L | 9510460..9510652 | 431..239 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:36:28 has no hits.
BS06182.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:27 Download gff for
BS06182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-PB | 1..414 | 17..430 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:09:56 Download gff for
BS06182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3395-PB | 1..414 | 17..430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:40:45 Download gff for
BS06182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RB | 55..470 | 16..431 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:48:11 Download gff for
BS06182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RB | 55..470 | 16..431 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:48:11 Download gff for
BS06182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9510460..9510651 | 240..431 | 100 | <- | Minus |
3L | 9511056..9511279 | 16..239 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:40:45 Download gff for
BS06182.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9503560..9503751 | 240..431 | 100 | <- | Minus |
arm_3L | 9504156..9504379 | 16..239 | 100 | | Minus |
BS06182.complete Sequence
446 bp (446 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635388
> BS06182.complete
GAAGTTATCAGTCGACATGGTGAACGGCCGCATACCCTCGGTCTTCTCGA
AGACCTACGTGACTCCCCGTCGCCCCTATGAGAAGGCGCGTCTGGACCAG
GAGTTGAAGATCATCGGCGAGTATGGTCTGCGCAACAAGCGCGAAGTGTG
GCGCGTCAAGTACGCCCTGGCTAAGATCCGTAAGGCCGCTCGTGAGCTGC
TGACCCTCGACGAGAAGGACGAGAAGCGTCTGTTCCAGGGTAATGCCCTG
CTGCGCCGTCTGGTCCGTATCGGTGTCCTGGACGAGTCCCGCATGAAGCT
CGATTACGTGCTGGGTCTGAAGATTGAGGACTTCTTGGAGCGTCGTCTGC
AGACGCAGGTGTTCAAGCTGGGACTTGCCAAGTCCATCCATCATGCTCGC
GTCCTGATCCGTCAGCGTCACATTCGGTAAAAGCTTTCTAGACCAT
BS06182.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:51:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS9-RB | 414 | CG3395-PB | 1..414 | 17..430 | 2070 | 100 | Plus |
RpS9-RE | 588 | CG3395-PE | 1..410 | 17..426 | 2050 | 100 | Plus |
RpS9-RD | 588 | CG3395-PD | 1..410 | 17..426 | 2050 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:51:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS9-RB | 917 | CG3395-RB | 55..470 | 16..431 | 2080 | 100 | Plus |
RpS9-RE | 803 | CG3395-RE | 27..437 | 16..426 | 2055 | 100 | Plus |
RpS9-RD | 706 | CG3395-RD | 27..437 | 16..426 | 2055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:51:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 9511052..9511279 | 243..16 | 1140 | 100 | Minus |
3L | 28110227 | 3L | 9510460..9510652 | 431..239 | 965 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 00:51:11 has no hits.
BS06182.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:44:14 Download gff for
BS06182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RB | 1..414 | 17..430 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 02:10:59 Download gff for
BS06182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RB | 66..481 | 16..431 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:00:52 Download gff for
BS06182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RB | 56..467 | 17..428 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:44:15 Download gff for
BS06182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RB | 66..481 | 16..431 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:27:44 Download gff for
BS06182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpS9-RB | 56..467 | 17..428 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:27:44 Download gff for
BS06182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 9510463..9510651 | 240..428 | 100 | <- | Minus |
3L | 9511056..9511278 | 17..239 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:00:52 Download gff for
BS06182.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 9503563..9503751 | 240..428 | 100 | <- | Minus |
arm_3L | 9504156..9504378 | 17..239 | 100 | | Minus |
BS06182.pep Sequence
Translation from 16 to 429
> BS06182.pep
MVNGRIPSVFSKTYVTPRRPYEKARLDQELKIIGEYGLRNKREVWRVKYA
LAKIRKAARELLTLDEKDEKRLFQGNALLRRLVRIGVLDESRMKLDYVLG
LKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIR*
BS06182.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 23:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpS9-PB | 137 | CG3395-PB | 1..137 | 1..137 | 685 | 100 | Plus |
RpS9-PE | 195 | CG3395-PE | 1..137 | 1..137 | 685 | 100 | Plus |
RpS9-PD | 195 | CG3395-PD | 1..137 | 1..137 | 685 | 100 | Plus |
RpS9-PA | 195 | CG3395-PA | 1..137 | 1..137 | 685 | 100 | Plus |