Clone Sequence Records
BS06185.5prime Sequence
765 bp (750 high quality bases) assembled on 2005-12-03
> BS06185.5prime
GAAGTTATCAGTCGACATGTTTCTCACGCGTTCCGAGTACGACAGAGGCG
TGAACACCTTCTCGCCGGAGGGCCGCCTCTTCCAAGTGGAATATGCCATT
GAGGCCATCAAATTGGGCTCCACAGCAATTGGAATTTGCACGCCAGAAGG
AGTGGTTTTGGCGGTGGAGAAGCGCATCACTTCGCCGCTAATGGTACCCA
GTACTGTGGAGAAGATTGTGGAGGTGGACAAGCACATTGGTTGCGCCACC
TCCGGCTTGATGGCCGATGCCAGGACTCTGATCGAGAGGGCACGCGTGGA
GTGCCAGAACCACTGGTTCGTCTACAACGAGCGCATGTCCATCGAGTCCT
GCGCCCAGGCTGTGTCCACTTTGGCCATCCAGTTCGGTGATAGTGGCGAC
AGCGATGGTGCCGCCGCCATGAGTCGTCCCTTTGGTGTGGCCATTCTATT
TGCCGGCATCGAGGCGGGACAACCCCAGTTGTGGCACATGGATCCCTCCG
GCACATTCGTGCGCCACGGAGCCAAGGCCATTGGCTCGGGCAGCGAAGGT
GCTCAGCAGAATCTGCAGGACTTATTTAGACCCGATTTGACTCTCGATGA
GGCTATCGACATTTCGCTCAACACACTTAAACAGGTTATGGAGGAGAAAC
TAAACTCCACCAATGTGGAGGTGATGACCATGACGAAAGAAAGAGAGTTC
TACATGTTCACCAAGGAGGAGGTGGAGCAGCACATTAAGAACATTGCGTA
AAAGCTTTCTAGACC
BS06185.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10938-PA | 735 | ProsMA5-RA | 1..735 | 17..751 | 3675 | 100 | Plus |
CG10938-PB | 735 | ProsMA5-RB | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:40:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha5-RB | 873 | CG10938-RB | 72..807 | 16..751 | 3680 | 100 | Plus |
Prosalpha5-RA | 884 | CG10938-RA | 83..818 | 16..751 | 3680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:40:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17413100..17413703 | 148..751 | 3020 | 100 | Plus |
2R | 25286936 | 2R | 17412910..17413044 | 16..150 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:40:42 has no hits.
BS06185.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:33 Download gff for
BS06185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10938-PA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:05 Download gff for
BS06185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10938-PB | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:24:32 Download gff for
BS06185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha5-RA | 80..820 | 9..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:33 Download gff for
BS06185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha5-RA | 80..820 | 9..755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:33 Download gff for
BS06185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17412896..17413043 | 2..149 | 96 | -> | Plus |
2R | 17413102..17413705 | 150..755 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:24:32 Download gff for
BS06185.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13300401..13300548 | 2..149 | 96 | -> | Plus |
arm_2R | 13300607..13301210 | 150..755 | 99 | | Plus |
BS06185.3prime Sequence
765 bp (742 high quality bases) assembled on 2005-12-03
> BS06185.3prime
ATGGTCTAGAAAGCTTTTACGCAATGTTCTTAATGTGCTGCTCCACCTCC
TCCTTGGTGAACATGTAGAACTCTCTTTCTTTCGTCATGGTCATCACCTC
CACATTGGTGGAGTTTAGTTTCTCCTCCATAACCTGTTTAAGTGTGTTGA
GCGAAATGTCGATAGCCTCATCGAGAGTCAAATCGGGTCTAAATAAGTCC
TGCAGATTCTGCTGAGCACCTTCGCTGCCCGAGCCAATGGCCTTGGCTCC
GTGGCGCACGAATGTGCCGGAGGGATCCATGTGCCACAACTGGGGTTGTC
CCGCCTCGATGCCGGCAAATAGAATGGCCACACCAAAGGGACGACTCATG
GCGGCGGCACCATCGCTGTCGCCACTATCACCGAACTGGATGGCCAAAGT
GGACACAGCCTGGGCGCAGGACTCGATGGACATGCGCTCGTTGTAGACGA
ACCAGTGGTTCTGGCACTCCACGCGTGCCCTCTCGATCAGAGTCCTGGCA
TCGGCCATCAAGCCGGAGGTGGCGCAACCAATGTGCTTGTCCACCTCCAC
AATCTTCTCCACAGTACTGGGTACCATTAGCGGCGAAGTGATGCGCTTCT
CCACCGCCAAAACCACTCCTTCTGGCGTGCAAATTCCAATTGCTGTGGAG
CCCAATTTGATGGCCTCAATGGCATATTCCACTTGGAAGAGGCGGCCCTC
CGGCGAGAAGGTGTTCACGCCTCTGTCGTACTCGGAACGCGTGAGAAACA
TGTCGACTGATAACT
BS06185.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10938-PA | 735 | ProsMA5-RA | 1..735 | 751..17 | 3675 | 100 | Minus |
CG10938-PB | 735 | ProsMA5-RB | 1..735 | 751..17 | 3675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:42:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha5-RB | 873 | CG10938-RB | 72..807 | 752..17 | 3680 | 100 | Minus |
Prosalpha5-RA | 884 | CG10938-RA | 83..818 | 752..17 | 3680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:42:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17413100..17413703 | 620..17 | 3020 | 100 | Minus |
2R | 25286936 | 2R | 17412910..17413044 | 752..618 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-01 08:42:04 has no hits.
BS06185.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:32 Download gff for
BS06185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10938-PA | 1..735 | 17..751 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:04 Download gff for
BS06185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10938-PB | 1..735 | 17..751 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:27:55 Download gff for
BS06185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha5-RA | 80..820 | 13..759 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:54:41 Download gff for
BS06185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha5-RA | 80..820 | 13..759 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:54:41 Download gff for
BS06185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17412897..17413043 | 619..765 | 96 | -> | Minus |
2R | 17413102..17413705 | 13..618 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:27:55 Download gff for
BS06185.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13300402..13300548 | 619..765 | 96 | -> | Minus |
arm_2R | 13300607..13301210 | 13..618 | 99 | | Minus |
BS06185.complete Sequence
767 bp (767 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635389
> BS06185.complete
GAAGTTATCAGTCGACATGTTTCTCACGCGTTCCGAGTACGACAGAGGCG
TGAACACCTTCTCGCCGGAGGGCCGCCTCTTCCAAGTGGAATATGCCATT
GAGGCCATCAAATTGGGCTCCACAGCAATTGGAATTTGCACGCCAGAAGG
AGTGGTTTTGGCGGTGGAGAAGCGCATCACTTCGCCGCTAATGGTACCCA
GTACTGTGGAGAAGATTGTGGAGGTGGACAAGCACATTGGTTGCGCCACC
TCCGGCTTGATGGCCGATGCCAGGACTCTGATCGAGAGGGCACGCGTGGA
GTGCCAGAACCACTGGTTCGTCTACAACGAGCGCATGTCCATCGAGTCCT
GCGCCCAGGCTGTGTCCACTTTGGCCATCCAGTTCGGTGATAGTGGCGAC
AGCGATGGTGCCGCCGCCATGAGTCGTCCCTTTGGTGTGGCCATTCTATT
TGCCGGCATCGAGGCGGGACAACCCCAGTTGTGGCACATGGATCCCTCCG
GCACATTCGTGCGCCACGGAGCCAAGGCCATTGGCTCGGGCAGCGAAGGT
GCTCAGCAGAATCTGCAGGACTTATTTAGACCCGATTTGACTCTCGATGA
GGCTATCGACATTTCGCTCAACACACTTAAACAGGTTATGGAGGAGAAAC
TAAACTCCACCAATGTGGAGGTGATGACCATGACGAAAGAAAGAGAGTTC
TACATGTTCACCAAGGAGGAGGTGGAGCAGCACATTAAGAACATTGCGTA
AAAGCTTTCTAGACCAT
BS06185.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha5-RB | 735 | CG10938-PB | 1..735 | 17..751 | 3675 | 100 | Plus |
Prosalpha5-RA | 735 | CG10938-PA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha5-RB | 873 | CG10938-RB | 72..807 | 16..751 | 3680 | 100 | Plus |
Prosalpha5-RA | 884 | CG10938-RA | 83..818 | 16..751 | 3680 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17413100..17413703 | 148..751 | 3020 | 100 | Plus |
2R | 25286936 | 2R | 17412910..17413044 | 16..150 | 675 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:11:19 has no hits.
BS06185.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:34 Download gff for
BS06185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ProsMA5-RB | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:17 Download gff for
BS06185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ProsMA5-RB | 58..809 | 2..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:35 Download gff for
BS06185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha5-RA | 90..816 | 23..749 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:34 Download gff for
BS06185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ProsMA5-RB | 58..809 | 2..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:47 Download gff for
BS06185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prosalpha5-RA | 90..816 | 23..749 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:47 Download gff for
BS06185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17412917..17413043 | 23..149 | 100 | -> | Plus |
2R | 17413102..17413701 | 150..749 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:35 Download gff for
BS06185.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13300422..13300548 | 23..149 | 100 | -> | Plus |
arm_2R | 13300607..13301206 | 150..749 | 100 | | Plus |
BS06185.pep Sequence
Translation from 16 to 750
> BS06185.pep
MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTPEGVVLAV
EKRITSPLMVPSTVEKIVEVDKHIGCATSGLMADARTLIERARVECQNHW
FVYNERMSIESCAQAVSTLAIQFGDSGDSDGAAAMSRPFGVAILFAGIEA
GQPQLWHMDPSGTFVRHGAKAIGSGSEGAQQNLQDLFRPDLTLDEAIDIS
LNTLKQVMEEKLNSTNVEVMTMTKEREFYMFTKEEVEQHIKNIA*
BS06185.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prosalpha5-PB | 244 | CG10938-PB | 1..244 | 1..244 | 1244 | 100 | Plus |
Prosalpha5-PA | 244 | CG10938-PA | 1..244 | 1..244 | 1244 | 100 | Plus |
Prosalpha2-PA | 234 | CG5266-PA | 1..210 | 3..219 | 342 | 33.2 | Plus |
Prosalpha4-PA | 249 | CG3422-PA | 3..234 | 6..243 | 335 | 33.6 | Plus |
Prosalpha4T1-PA | 249 | CG17268-PA | 3..232 | 6..241 | 315 | 32.2 | Plus |