Clone BS06185 Report

Search the DGRC for BS06185

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:85
Vector:pDNR-Dual
Associated Gene/TranscriptProsalpha5-RA
Protein status:BS06185.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06185.5prime Sequence

765 bp (750 high quality bases) assembled on 2005-12-03

> BS06185.5prime
GAAGTTATCAGTCGACATGTTTCTCACGCGTTCCGAGTACGACAGAGGCG
TGAACACCTTCTCGCCGGAGGGCCGCCTCTTCCAAGTGGAATATGCCATT
GAGGCCATCAAATTGGGCTCCACAGCAATTGGAATTTGCACGCCAGAAGG
AGTGGTTTTGGCGGTGGAGAAGCGCATCACTTCGCCGCTAATGGTACCCA
GTACTGTGGAGAAGATTGTGGAGGTGGACAAGCACATTGGTTGCGCCACC
TCCGGCTTGATGGCCGATGCCAGGACTCTGATCGAGAGGGCACGCGTGGA
GTGCCAGAACCACTGGTTCGTCTACAACGAGCGCATGTCCATCGAGTCCT
GCGCCCAGGCTGTGTCCACTTTGGCCATCCAGTTCGGTGATAGTGGCGAC
AGCGATGGTGCCGCCGCCATGAGTCGTCCCTTTGGTGTGGCCATTCTATT
TGCCGGCATCGAGGCGGGACAACCCCAGTTGTGGCACATGGATCCCTCCG
GCACATTCGTGCGCCACGGAGCCAAGGCCATTGGCTCGGGCAGCGAAGGT
GCTCAGCAGAATCTGCAGGACTTATTTAGACCCGATTTGACTCTCGATGA
GGCTATCGACATTTCGCTCAACACACTTAAACAGGTTATGGAGGAGAAAC
TAAACTCCACCAATGTGGAGGTGATGACCATGACGAAAGAAAGAGAGTTC
TACATGTTCACCAAGGAGGAGGTGGAGCAGCACATTAAGAACATTGCGTA
AAAGCTTTCTAGACC

BS06185.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG10938-PA 735 ProsMA5-RA 1..735 17..751 3675 100 Plus
CG10938-PB 735 ProsMA5-RB 1..735 17..751 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:40:45
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha5-RB 873 CG10938-RB 72..807 16..751 3680 100 Plus
Prosalpha5-RA 884 CG10938-RA 83..818 16..751 3680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:40:40
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17413100..17413703 148..751 3020 100 Plus
2R 25286936 2R 17412910..17413044 16..150 675 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:40:42 has no hits.

BS06185.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:33 Download gff for BS06185.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10938-PA 1..735 17..751 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:05 Download gff for BS06185.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10938-PB 1..735 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:24:32 Download gff for BS06185.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha5-RA 80..820 9..755 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:33 Download gff for BS06185.5prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha5-RA 80..820 9..755 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:33 Download gff for BS06185.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17412896..17413043 2..149 96 -> Plus
2R 17413102..17413705 150..755 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:24:32 Download gff for BS06185.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13300401..13300548 2..149 96 -> Plus
arm_2R 13300607..13301210 150..755 99   Plus

BS06185.3prime Sequence

765 bp (742 high quality bases) assembled on 2005-12-03

> BS06185.3prime
ATGGTCTAGAAAGCTTTTACGCAATGTTCTTAATGTGCTGCTCCACCTCC
TCCTTGGTGAACATGTAGAACTCTCTTTCTTTCGTCATGGTCATCACCTC
CACATTGGTGGAGTTTAGTTTCTCCTCCATAACCTGTTTAAGTGTGTTGA
GCGAAATGTCGATAGCCTCATCGAGAGTCAAATCGGGTCTAAATAAGTCC
TGCAGATTCTGCTGAGCACCTTCGCTGCCCGAGCCAATGGCCTTGGCTCC
GTGGCGCACGAATGTGCCGGAGGGATCCATGTGCCACAACTGGGGTTGTC
CCGCCTCGATGCCGGCAAATAGAATGGCCACACCAAAGGGACGACTCATG
GCGGCGGCACCATCGCTGTCGCCACTATCACCGAACTGGATGGCCAAAGT
GGACACAGCCTGGGCGCAGGACTCGATGGACATGCGCTCGTTGTAGACGA
ACCAGTGGTTCTGGCACTCCACGCGTGCCCTCTCGATCAGAGTCCTGGCA
TCGGCCATCAAGCCGGAGGTGGCGCAACCAATGTGCTTGTCCACCTCCAC
AATCTTCTCCACAGTACTGGGTACCATTAGCGGCGAAGTGATGCGCTTCT
CCACCGCCAAAACCACTCCTTCTGGCGTGCAAATTCCAATTGCTGTGGAG
CCCAATTTGATGGCCTCAATGGCATATTCCACTTGGAAGAGGCGGCCCTC
CGGCGAGAAGGTGTTCACGCCTCTGTCGTACTCGGAACGCGTGAGAAACA
TGTCGACTGATAACT

BS06185.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG10938-PA 735 ProsMA5-RA 1..735 751..17 3675 100 Minus
CG10938-PB 735 ProsMA5-RB 1..735 751..17 3675 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-01 08:42:07
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha5-RB 873 CG10938-RB 72..807 752..17 3680 100 Minus
Prosalpha5-RA 884 CG10938-RA 83..818 752..17 3680 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-01 08:42:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17413100..17413703 620..17 3020 100 Minus
2R 25286936 2R 17412910..17413044 752..618 675 100 Minus
Blast to na_te.dros performed on 2015-02-01 08:42:04 has no hits.

BS06185.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:32 Download gff for BS06185.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10938-PA 1..735 17..751 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:04 Download gff for BS06185.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10938-PB 1..735 17..751 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 15:27:55 Download gff for BS06185.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha5-RA 80..820 13..759 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-01 09:54:41 Download gff for BS06185.3prime
Subject Subject Range Query Range Percent Splice Strand
Prosalpha5-RA 80..820 13..759 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-01 09:54:41 Download gff for BS06185.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17412897..17413043 619..765 96 -> Minus
2R 17413102..17413705 13..618 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 15:27:55 Download gff for BS06185.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13300402..13300548 619..765 96 -> Minus
arm_2R 13300607..13301210 13..618 99   Minus

BS06185.complete Sequence

767 bp (767 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635389

> BS06185.complete
GAAGTTATCAGTCGACATGTTTCTCACGCGTTCCGAGTACGACAGAGGCG
TGAACACCTTCTCGCCGGAGGGCCGCCTCTTCCAAGTGGAATATGCCATT
GAGGCCATCAAATTGGGCTCCACAGCAATTGGAATTTGCACGCCAGAAGG
AGTGGTTTTGGCGGTGGAGAAGCGCATCACTTCGCCGCTAATGGTACCCA
GTACTGTGGAGAAGATTGTGGAGGTGGACAAGCACATTGGTTGCGCCACC
TCCGGCTTGATGGCCGATGCCAGGACTCTGATCGAGAGGGCACGCGTGGA
GTGCCAGAACCACTGGTTCGTCTACAACGAGCGCATGTCCATCGAGTCCT
GCGCCCAGGCTGTGTCCACTTTGGCCATCCAGTTCGGTGATAGTGGCGAC
AGCGATGGTGCCGCCGCCATGAGTCGTCCCTTTGGTGTGGCCATTCTATT
TGCCGGCATCGAGGCGGGACAACCCCAGTTGTGGCACATGGATCCCTCCG
GCACATTCGTGCGCCACGGAGCCAAGGCCATTGGCTCGGGCAGCGAAGGT
GCTCAGCAGAATCTGCAGGACTTATTTAGACCCGATTTGACTCTCGATGA
GGCTATCGACATTTCGCTCAACACACTTAAACAGGTTATGGAGGAGAAAC
TAAACTCCACCAATGTGGAGGTGATGACCATGACGAAAGAAAGAGAGTTC
TACATGTTCACCAAGGAGGAGGTGGAGCAGCACATTAAGAACATTGCGTA
AAAGCTTTCTAGACCAT

BS06185.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha5-RB 735 CG10938-PB 1..735 17..751 3675 100 Plus
Prosalpha5-RA 735 CG10938-PA 1..735 17..751 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:11:22
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha5-RB 873 CG10938-RB 72..807 16..751 3680 100 Plus
Prosalpha5-RA 884 CG10938-RA 83..818 16..751 3680 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:11:19
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17413100..17413703 148..751 3020 100 Plus
2R 25286936 2R 17412910..17413044 16..150 675 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:11:19 has no hits.

BS06185.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:34 Download gff for BS06185.complete
Subject Subject Range Query Range Percent Splice Strand
ProsMA5-RB 1..735 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:17 Download gff for BS06185.complete
Subject Subject Range Query Range Percent Splice Strand
ProsMA5-RB 58..809 2..755 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:50:35 Download gff for BS06185.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha5-RA 90..816 23..749 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:34 Download gff for BS06185.complete
Subject Subject Range Query Range Percent Splice Strand
ProsMA5-RB 58..809 2..755 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:12:47 Download gff for BS06185.complete
Subject Subject Range Query Range Percent Splice Strand
Prosalpha5-RA 90..816 23..749 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:12:47 Download gff for BS06185.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17412917..17413043 23..149 100 -> Plus
2R 17413102..17413701 150..749 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:50:35 Download gff for BS06185.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13300422..13300548 23..149 100 -> Plus
arm_2R 13300607..13301206 150..749 100   Plus

BS06185.pep Sequence

Translation from 16 to 750

> BS06185.pep
MFLTRSEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGICTPEGVVLAV
EKRITSPLMVPSTVEKIVEVDKHIGCATSGLMADARTLIERARVECQNHW
FVYNERMSIESCAQAVSTLAIQFGDSGDSDGAAAMSRPFGVAILFAGIEA
GQPQLWHMDPSGTFVRHGAKAIGSGSEGAQQNLQDLFRPDLTLDEAIDIS
LNTLKQVMEEKLNSTNVEVMTMTKEREFYMFTKEEVEQHIKNIA*

BS06185.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
Prosalpha5-PB 244 CG10938-PB 1..244 1..244 1244 100 Plus
Prosalpha5-PA 244 CG10938-PA 1..244 1..244 1244 100 Plus
Prosalpha2-PA 234 CG5266-PA 1..210 3..219 342 33.2 Plus
Prosalpha4-PA 249 CG3422-PA 3..234 6..243 335 33.6 Plus
Prosalpha4T1-PA 249 CG17268-PA 3..232 6..241 315 32.2 Plus