Clone BS06189 Report

Search the DGRC for BS06189

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:89
Vector:pDNR-Dual
Associated Gene/TranscriptCG3476-RA
Protein status:BS06189.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06189.3prime Sequence

856 bp (855 high quality bases) assembled on 2005-12-03

> BS06189.3prime
ATGGTCTAGAAAGCTTTTAAGCCTTCAGCAAATCATTGGTTAGCTCCACG
CCGAAGAAAACTGCTGCGGTGGAGGGAAAGGCACGAAGTAGAATTGGCAG
GATACCGCGAAATAGAGCTTTTGGGCCTTCTGTGGCCATGAGGTTTCTAA
AAACGCTGCGAATGCCGTGCTTGTATGTTCCCTCAGGTGCCGACTGGAGA
CGGCTTTTAAGTACATCGAACGGCACGGCCAAAGTCCAAAACACAATGCC
CGCCGTTCCGCCGGACAGAATAGTTGATGTGGTGCTAATCTTTCCATTGG
CGGACTTCTTTCTAGCCAATTCCTGTAGGAATTCGTAGGTCACAAAGTAA
AAACCGGTGGGCGAGTCTCTCAGAATGCACGCGCATGTTCCCTTGAAGAG
GCTCCGAATGCCACCCTGCCTATATAGCTTGGCGGCCGTGTCAATGGTTC
CATTGTAGAGCAGAGGTCCGTTGGACACGGTTTGCGTCTGCAGAAGGACT
TTTATACGATCGGTGGGCACTGTGACGAGGGCAGAACAAACTCCGGCCAA
GGCTCCCGCGGCGAAGATTTGTGGGTAGGTGAGCCTAATGTGGTCATCCG
TTTGGAACAATCGTTTACCCGCCGCATAGACGGCAAAGTCCACGGCATAG
ATGGGTGTTACTCCCACAAGTGGAGCGGATATTCCTCTGTAGAATCCGCG
AAAACCCTCATAACGAAATGTCCTGGCGGCACAATCTATGACTCCCTTGT
ATCTCGGCGGCTGTCCAGGTGGAGGTGTGGGCATGGTTTGGAGACGGACC
TTTATTGTGTCCAATGGATGGCCAACGAGCACATTGCACATGCCTCCCAC
GCCGCC

BS06189.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG3476-PA 900 CG3476-RA 61..900 856..17 4200 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3476-RA 1245 CG3476-RA 346..1186 856..16 4205 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:01
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7027986..7028420 801..367 2175 100 Minus
2L 23513712 2L 7028488..7028666 368..190 895 100 Minus
2L 23513712 2L 7028726..7028900 190..16 875 100 Minus
2L 23513712 2L 7027871..7027929 856..798 295 100 Minus
Blast to na_te.dros performed on 2015-02-10 18:30:03 has no hits.

BS06189.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:36 Download gff for BS06189.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3476-PA 61..900 17..856 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:09 Download gff for BS06189.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3476-PA 61..900 17..856 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:37:56 Download gff for BS06189.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3476-RA 346..1189 10..856 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:00:57 Download gff for BS06189.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3476-RA 346..1189 10..856 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:00:57 Download gff for BS06189.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7027871..7027927 800..856 100 -> Minus
2L 7027988..7028420 367..799 100 -> Minus
2L 7028490..7028666 190..366 100 -> Minus
2L 7028727..7028903 10..189 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:37:56 Download gff for BS06189.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7027871..7027927 800..856 100 -> Minus
arm_2L 7027988..7028420 367..799 100 -> Minus
arm_2L 7028490..7028666 190..366 100 -> Minus
arm_2L 7028727..7028903 10..189 98   Minus

BS06189.5prime Sequence

831 bp (751 high quality bases) assembled on 2005-12-03

> BS06189.5prime
GAAGTTATCAGTCGACATGGAGGAGGTCGAAATCAGCACAGAAAAGAAAT
CCAATCCCGTAAAGTCATTTATTGCGGGCGGCGTGGGAGGCATGTGCAAT
GTGCTCGTTGGCCATCCATTGGACACAATAAAGGTCCGTCTCCAAACCAT
GCCCACACCTCCACCTGGACAGCCGCCGAGATACAAGGGAGTCATAGATT
GTGCCGCCAGGACATTTCGTTATGAGGGTTTTCGCGGATTCTACAGAGGA
ATATCCGCTCCACTTGTGGGAGTAACACCCATCTATGCCGTGGACTTTGC
CGTCTATGCGGCGGGTAAACGATTGTTCCAAACGGATGACCACATTAGGC
TCACCTACCCACAAATCTTCGCCGCGGGAGCCTTGGCCGGAGTTTGTTCT
GCCCTCGTCACAGTGCCCACCGATCGTATAAAAGTCCTTCTGCAGACGCA
AACCGTGTCCAACGGACCTCTGCTCTACAATGGAACCATTGACACGGCCG
CCAAGCTATATAGGCAGGGTGGCATTCGGAGCCTCTTCAAGGGAACATGC
GCGTGCATTCTGAGAGACTCGCCCACCGGTTTTTACTTTGTGACCTACGA
ATTCCTACAGGAATTGGCTAGAAAGAAGTCCGCCAATGGAAAGATTAGCA
CCACATCAACTATTCTGTCCGGCGGAACGGCGGGCATTGTGTTTTGGACT
TTGGCCGTGCCGTTCGATGTACTTAAAAGCCGTCTCCAGTCGGCACCTGA
GGGAACTACAAGCACGGCATTCGCAGCGTTTTTAGAAACCTCATGGCCAC
AGAAGGCCCCAAAGCTCTATTTCGCGGTATC

BS06189.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG3476-PA 900 CG3476-RA 1..740 17..756 3700 100 Plus
CG3476-PA 900 CG3476-RA 742..816 757..831 350 98.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:44:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3476-RA 1245 CG3476-RA 286..1101 17..831 4040 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:44:34
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7027986..7028420 132..566 2175 100 Plus
2L 23513712 2L 7028488..7028666 565..743 895 100 Plus
2L 23513712 2L 7027811..7027929 17..135 595 100 Plus
2L 23513712 2L 7028726..7028815 743..831 385 97.8 Plus
Blast to na_te.dros performed on 2015-02-11 10:44:36 has no hits.

BS06189.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:37 Download gff for BS06189.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3476-PA 1..816 17..831 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:11 Download gff for BS06189.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3476-PA 1..816 17..831 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:25:23 Download gff for BS06189.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3476-RA 280..1101 8..831 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:19 Download gff for BS06189.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3476-RA 280..1101 8..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:19 Download gff for BS06189.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7028490..7028666 567..743 100 -> Plus
2L 7028727..7028815 744..831 97   Plus
2L 7027805..7027927 8..133 97 -> Plus
2L 7027988..7028420 134..566 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:25:23 Download gff for BS06189.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7027805..7027927 8..133 97 -> Plus
arm_2L 7027988..7028420 134..566 100 -> Plus
arm_2L 7028490..7028666 567..743 100 -> Plus
arm_2L 7028727..7028815 744..831 97   Plus

BS06189.complete Sequence

932 bp (932 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635390

> BS06189.complete
GAAGTTATCAGTCGACATGGAGGAGGTCGAAATCAGCACAGAAAAGAAAT
CCAATCCCGTAAAGTCATTTATTGCGGGCGGCGTGGGAGGCATGTGCAAT
GTGCTCGTTGGCCATCCATTGGACACAATAAAGGTCCGTCTCCAAACCAT
GCCCACACCTCCACCTGGACAGCCGCCGAGATACAAGGGAGTCATAGATT
GTGCCGCCAGGACATTTCGTTATGAGGGTTTTCGCGGATTCTACAGAGGA
ATATCCGCTCCACTTGTGGGAGTAACACCCATCTATGCCGTGGACTTTGC
CGTCTATGCGGCGGGTAAACGATTGTTCCAAACGGATGACCACATTAGGC
TCACCTACCCACAAATCTTCGCCGCGGGAGCCTTGGCCGGAGTTTGTTCT
GCCCTCGTCACAGTGCCCACCGATCGTATAAAAGTCCTTCTGCAGACGCA
AACCGTGTCCAACGGACCTCTGCTCTACAATGGAACCATTGACACGGCCG
CCAAGCTATATAGGCAGGGTGGCATTCGGAGCCTCTTCAAGGGAACATGC
GCGTGCATTCTGAGAGACTCGCCCACCGGTTTTTACTTTGTGACCTACGA
ATTCCTACAGGAATTGGCTAGAAAGAAGTCCGCCAATGGAAAGATTAGCA
CCACATCAACTATTCTGTCCGGCGGAACGGCGGGCATTGTGTTTTGGACT
TTGGCCGTGCCGTTCGATGTACTTAAAAGCCGTCTCCAGTCGGCACCTGA
GGGAACATACAAGCACGGCATTCGCAGCGTTTTTAGAAACCTCATGGCCA
CAGAAGGCCCAAAAGCTCTATTTCGCGGTATCCTGCCAATTCTACTTCGT
GCCTTTCCCTCCACCGCAGCAGTTTTCTTCGGCGTGGAGCTAACCAATGA
TTTGCTGAAGGCTTAAAAGCTTTCTAGACCAT

BS06189.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG3476-RA 900 CG3476-PA 1..900 17..916 4500 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG3476-RA 1245 CG3476-RA 286..1186 17..917 4505 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7027986..7028420 132..566 2175 100 Plus
2L 23513712 2L 7028488..7028666 565..743 895 100 Plus
2L 23513712 2L 7028726..7028900 743..917 875 100 Plus
2L 23513712 2L 7027811..7027929 17..135 595 100 Plus
Blast to na_te.dros performed on 2014-11-27 10:06:12 has no hits.

BS06189.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:35 Download gff for BS06189.complete
Subject Subject Range Query Range Percent Splice Strand
CG3476-RA 1..900 17..916 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:18 Download gff for BS06189.complete
Subject Subject Range Query Range Percent Splice Strand
CG3476-RA 212..1121 8..923 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:36 Download gff for BS06189.complete
Subject Subject Range Query Range Percent Splice Strand
CG3476-RA 286..1183 17..914 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:35 Download gff for BS06189.complete
Subject Subject Range Query Range Percent Splice Strand
CG3476-RA 212..1121 8..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:07 Download gff for BS06189.complete
Subject Subject Range Query Range Percent Splice Strand
CG3476-RA 286..1183 17..914 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:07 Download gff for BS06189.complete
Subject Subject Range Query Range Percent Splice Strand
2L 7027811..7027927 17..133 100 -> Plus
2L 7027988..7028420 134..566 100 -> Plus
2L 7028490..7028666 567..743 100 -> Plus
2L 7028727..7028897 744..914 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:36 Download gff for BS06189.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7027811..7027927 17..133 100 -> Plus
arm_2L 7027988..7028420 134..566 100 -> Plus
arm_2L 7028490..7028666 567..743 100 -> Plus
arm_2L 7028727..7028897 744..914 100   Plus

BS06189.pep Sequence

Translation from 16 to 915

> BS06189.pep
MEEVEISTEKKSNPVKSFIAGGVGGMCNVLVGHPLDTIKVRLQTMPTPPP
GQPPRYKGVIDCAARTFRYEGFRGFYRGISAPLVGVTPIYAVDFAVYAAG
KRLFQTDDHIRLTYPQIFAAGALAGVCSALVTVPTDRIKVLLQTQTVSNG
PLLYNGTIDTAAKLYRQGGIRSLFKGTCACILRDSPTGFYFVTYEFLQEL
ARKKSANGKISTTSTILSGGTAGIVFWTLAVPFDVLKSRLQSAPEGTYKH
GIRSVFRNLMATEGPKALFRGILPILLRAFPSTAAVFFGVELTNDLLKA*

BS06189.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG3476-PA 299 CG3476-PA 1..299 1..299 1541 100 Plus
colt-PD 306 CG3057-PD 7..296 6..294 978 62.8 Plus
colt-PA 306 CG3057-PA 7..296 6..294 978 62.8 Plus
CG4995-PD 360 CG4995-PD 2..275 15..299 403 37.4 Plus
CG4995-PC 360 CG4995-PC 2..275 15..299 403 37.4 Plus
colt-PD 306 CG3057-PD 19..205 118..299 162 27.7 Plus
colt-PA 306 CG3057-PA 19..205 118..299 162 27.7 Plus