Clone Sequence Records
BS06189.3prime Sequence
856 bp (855 high quality bases) assembled on 2005-12-03
> BS06189.3prime
ATGGTCTAGAAAGCTTTTAAGCCTTCAGCAAATCATTGGTTAGCTCCACG
CCGAAGAAAACTGCTGCGGTGGAGGGAAAGGCACGAAGTAGAATTGGCAG
GATACCGCGAAATAGAGCTTTTGGGCCTTCTGTGGCCATGAGGTTTCTAA
AAACGCTGCGAATGCCGTGCTTGTATGTTCCCTCAGGTGCCGACTGGAGA
CGGCTTTTAAGTACATCGAACGGCACGGCCAAAGTCCAAAACACAATGCC
CGCCGTTCCGCCGGACAGAATAGTTGATGTGGTGCTAATCTTTCCATTGG
CGGACTTCTTTCTAGCCAATTCCTGTAGGAATTCGTAGGTCACAAAGTAA
AAACCGGTGGGCGAGTCTCTCAGAATGCACGCGCATGTTCCCTTGAAGAG
GCTCCGAATGCCACCCTGCCTATATAGCTTGGCGGCCGTGTCAATGGTTC
CATTGTAGAGCAGAGGTCCGTTGGACACGGTTTGCGTCTGCAGAAGGACT
TTTATACGATCGGTGGGCACTGTGACGAGGGCAGAACAAACTCCGGCCAA
GGCTCCCGCGGCGAAGATTTGTGGGTAGGTGAGCCTAATGTGGTCATCCG
TTTGGAACAATCGTTTACCCGCCGCATAGACGGCAAAGTCCACGGCATAG
ATGGGTGTTACTCCCACAAGTGGAGCGGATATTCCTCTGTAGAATCCGCG
AAAACCCTCATAACGAAATGTCCTGGCGGCACAATCTATGACTCCCTTGT
ATCTCGGCGGCTGTCCAGGTGGAGGTGTGGGCATGGTTTGGAGACGGACC
TTTATTGTGTCCAATGGATGGCCAACGAGCACATTGCACATGCCTCCCAC
GCCGCC
BS06189.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3476-PA | 900 | CG3476-RA | 61..900 | 856..17 | 4200 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:30:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3476-RA | 1245 | CG3476-RA | 346..1186 | 856..16 | 4205 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:30:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7027986..7028420 | 801..367 | 2175 | 100 | Minus |
2L | 23513712 | 2L | 7028488..7028666 | 368..190 | 895 | 100 | Minus |
2L | 23513712 | 2L | 7028726..7028900 | 190..16 | 875 | 100 | Minus |
2L | 23513712 | 2L | 7027871..7027929 | 856..798 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 18:30:03 has no hits.
BS06189.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:36 Download gff for
BS06189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-PA | 61..900 | 17..856 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:09 Download gff for
BS06189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-PA | 61..900 | 17..856 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:37:56 Download gff for
BS06189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-RA | 346..1189 | 10..856 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:00:57 Download gff for
BS06189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-RA | 346..1189 | 10..856 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 20:00:57 Download gff for
BS06189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7027871..7027927 | 800..856 | 100 | -> | Minus |
2L | 7027988..7028420 | 367..799 | 100 | -> | Minus |
2L | 7028490..7028666 | 190..366 | 100 | -> | Minus |
2L | 7028727..7028903 | 10..189 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:37:56 Download gff for
BS06189.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7027871..7027927 | 800..856 | 100 | -> | Minus |
arm_2L | 7027988..7028420 | 367..799 | 100 | -> | Minus |
arm_2L | 7028490..7028666 | 190..366 | 100 | -> | Minus |
arm_2L | 7028727..7028903 | 10..189 | 98 | | Minus |
BS06189.5prime Sequence
831 bp (751 high quality bases) assembled on 2005-12-03
> BS06189.5prime
GAAGTTATCAGTCGACATGGAGGAGGTCGAAATCAGCACAGAAAAGAAAT
CCAATCCCGTAAAGTCATTTATTGCGGGCGGCGTGGGAGGCATGTGCAAT
GTGCTCGTTGGCCATCCATTGGACACAATAAAGGTCCGTCTCCAAACCAT
GCCCACACCTCCACCTGGACAGCCGCCGAGATACAAGGGAGTCATAGATT
GTGCCGCCAGGACATTTCGTTATGAGGGTTTTCGCGGATTCTACAGAGGA
ATATCCGCTCCACTTGTGGGAGTAACACCCATCTATGCCGTGGACTTTGC
CGTCTATGCGGCGGGTAAACGATTGTTCCAAACGGATGACCACATTAGGC
TCACCTACCCACAAATCTTCGCCGCGGGAGCCTTGGCCGGAGTTTGTTCT
GCCCTCGTCACAGTGCCCACCGATCGTATAAAAGTCCTTCTGCAGACGCA
AACCGTGTCCAACGGACCTCTGCTCTACAATGGAACCATTGACACGGCCG
CCAAGCTATATAGGCAGGGTGGCATTCGGAGCCTCTTCAAGGGAACATGC
GCGTGCATTCTGAGAGACTCGCCCACCGGTTTTTACTTTGTGACCTACGA
ATTCCTACAGGAATTGGCTAGAAAGAAGTCCGCCAATGGAAAGATTAGCA
CCACATCAACTATTCTGTCCGGCGGAACGGCGGGCATTGTGTTTTGGACT
TTGGCCGTGCCGTTCGATGTACTTAAAAGCCGTCTCCAGTCGGCACCTGA
GGGAACTACAAGCACGGCATTCGCAGCGTTTTTAGAAACCTCATGGCCAC
AGAAGGCCCCAAAGCTCTATTTCGCGGTATC
BS06189.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3476-PA | 900 | CG3476-RA | 1..740 | 17..756 | 3700 | 100 | Plus |
CG3476-PA | 900 | CG3476-RA | 742..816 | 757..831 | 350 | 98.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:44:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3476-RA | 1245 | CG3476-RA | 286..1101 | 17..831 | 4040 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:44:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7027986..7028420 | 132..566 | 2175 | 100 | Plus |
2L | 23513712 | 2L | 7028488..7028666 | 565..743 | 895 | 100 | Plus |
2L | 23513712 | 2L | 7027811..7027929 | 17..135 | 595 | 100 | Plus |
2L | 23513712 | 2L | 7028726..7028815 | 743..831 | 385 | 97.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:44:36 has no hits.
BS06189.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:37 Download gff for
BS06189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-PA | 1..816 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:11 Download gff for
BS06189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-PA | 1..816 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:25:23 Download gff for
BS06189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-RA | 280..1101 | 8..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:29:19 Download gff for
BS06189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-RA | 280..1101 | 8..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:29:19 Download gff for
BS06189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7028490..7028666 | 567..743 | 100 | -> | Plus |
2L | 7028727..7028815 | 744..831 | 97 | | Plus |
2L | 7027805..7027927 | 8..133 | 97 | -> | Plus |
2L | 7027988..7028420 | 134..566 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:25:23 Download gff for
BS06189.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7027805..7027927 | 8..133 | 97 | -> | Plus |
arm_2L | 7027988..7028420 | 134..566 | 100 | -> | Plus |
arm_2L | 7028490..7028666 | 567..743 | 100 | -> | Plus |
arm_2L | 7028727..7028815 | 744..831 | 97 | | Plus |
BS06189.complete Sequence
932 bp (932 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635390
> BS06189.complete
GAAGTTATCAGTCGACATGGAGGAGGTCGAAATCAGCACAGAAAAGAAAT
CCAATCCCGTAAAGTCATTTATTGCGGGCGGCGTGGGAGGCATGTGCAAT
GTGCTCGTTGGCCATCCATTGGACACAATAAAGGTCCGTCTCCAAACCAT
GCCCACACCTCCACCTGGACAGCCGCCGAGATACAAGGGAGTCATAGATT
GTGCCGCCAGGACATTTCGTTATGAGGGTTTTCGCGGATTCTACAGAGGA
ATATCCGCTCCACTTGTGGGAGTAACACCCATCTATGCCGTGGACTTTGC
CGTCTATGCGGCGGGTAAACGATTGTTCCAAACGGATGACCACATTAGGC
TCACCTACCCACAAATCTTCGCCGCGGGAGCCTTGGCCGGAGTTTGTTCT
GCCCTCGTCACAGTGCCCACCGATCGTATAAAAGTCCTTCTGCAGACGCA
AACCGTGTCCAACGGACCTCTGCTCTACAATGGAACCATTGACACGGCCG
CCAAGCTATATAGGCAGGGTGGCATTCGGAGCCTCTTCAAGGGAACATGC
GCGTGCATTCTGAGAGACTCGCCCACCGGTTTTTACTTTGTGACCTACGA
ATTCCTACAGGAATTGGCTAGAAAGAAGTCCGCCAATGGAAAGATTAGCA
CCACATCAACTATTCTGTCCGGCGGAACGGCGGGCATTGTGTTTTGGACT
TTGGCCGTGCCGTTCGATGTACTTAAAAGCCGTCTCCAGTCGGCACCTGA
GGGAACATACAAGCACGGCATTCGCAGCGTTTTTAGAAACCTCATGGCCA
CAGAAGGCCCAAAAGCTCTATTTCGCGGTATCCTGCCAATTCTACTTCGT
GCCTTTCCCTCCACCGCAGCAGTTTTCTTCGGCGTGGAGCTAACCAATGA
TTTGCTGAAGGCTTAAAAGCTTTCTAGACCAT
BS06189.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3476-RA | 900 | CG3476-PA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3476-RA | 1245 | CG3476-RA | 286..1186 | 17..917 | 4505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7027986..7028420 | 132..566 | 2175 | 100 | Plus |
2L | 23513712 | 2L | 7028488..7028666 | 565..743 | 895 | 100 | Plus |
2L | 23513712 | 2L | 7028726..7028900 | 743..917 | 875 | 100 | Plus |
2L | 23513712 | 2L | 7027811..7027929 | 17..135 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:06:12 has no hits.
BS06189.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:35 Download gff for
BS06189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-RA | 1..900 | 17..916 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:18 Download gff for
BS06189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-RA | 212..1121 | 8..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:36 Download gff for
BS06189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-RA | 286..1183 | 17..914 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:35 Download gff for
BS06189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-RA | 212..1121 | 8..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:07 Download gff for
BS06189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3476-RA | 286..1183 | 17..914 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:07 Download gff for
BS06189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7027811..7027927 | 17..133 | 100 | -> | Plus |
2L | 7027988..7028420 | 134..566 | 100 | -> | Plus |
2L | 7028490..7028666 | 567..743 | 100 | -> | Plus |
2L | 7028727..7028897 | 744..914 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:36 Download gff for
BS06189.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7027811..7027927 | 17..133 | 100 | -> | Plus |
arm_2L | 7027988..7028420 | 134..566 | 100 | -> | Plus |
arm_2L | 7028490..7028666 | 567..743 | 100 | -> | Plus |
arm_2L | 7028727..7028897 | 744..914 | 100 | | Plus |
BS06189.pep Sequence
Translation from 16 to 915
> BS06189.pep
MEEVEISTEKKSNPVKSFIAGGVGGMCNVLVGHPLDTIKVRLQTMPTPPP
GQPPRYKGVIDCAARTFRYEGFRGFYRGISAPLVGVTPIYAVDFAVYAAG
KRLFQTDDHIRLTYPQIFAAGALAGVCSALVTVPTDRIKVLLQTQTVSNG
PLLYNGTIDTAAKLYRQGGIRSLFKGTCACILRDSPTGFYFVTYEFLQEL
ARKKSANGKISTTSTILSGGTAGIVFWTLAVPFDVLKSRLQSAPEGTYKH
GIRSVFRNLMATEGPKALFRGILPILLRAFPSTAAVFFGVELTNDLLKA*
BS06189.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3476-PA | 299 | CG3476-PA | 1..299 | 1..299 | 1541 | 100 | Plus |
colt-PD | 306 | CG3057-PD | 7..296 | 6..294 | 978 | 62.8 | Plus |
colt-PA | 306 | CG3057-PA | 7..296 | 6..294 | 978 | 62.8 | Plus |
CG4995-PD | 360 | CG4995-PD | 2..275 | 15..299 | 403 | 37.4 | Plus |
CG4995-PC | 360 | CG4995-PC | 2..275 | 15..299 | 403 | 37.4 | Plus |
colt-PD | 306 | CG3057-PD | 19..205 | 118..299 | 162 | 27.7 | Plus |
colt-PA | 306 | CG3057-PA | 19..205 | 118..299 | 162 | 27.7 | Plus |