Clone BS06194 Report

Search the DGRC for BS06194

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:94
Vector:pDNR-Dual
Associated Gene/Transcriptcyp33-RA
Protein status:BS06194.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06194.3prime Sequence

934 bp (765 high quality bases) assembled on 2005-12-03

> BS06194.3prime
ATGGTCTAGAAAGCTTTTATTTGAGTTCTCCACAGGAGTATATGACAATC
TTTTGGCTGGGAGTGCCCGACTTGGAGCCACAACGTTCCATCTTGCGCAC
CACCTCGGCGCCACTGATGACATGGCCAAAAACGACGTGCTTGTTGTCCA
GCCAATCTGTTTTTGTGGTACATATAAAAAACTGCGAGCCATTTGTGTTG
GCGCCCGAGTTGGCCATTGAAAGAGTTCCAAAACTGTTGTGTTTCAGATT
GAAGTTCTCATCGTTGAACTTTTTGCCATAGATGGACTTGCCGCCGGTGC
CATTGTTGTTGGTGAAGTCGCCTCCTTGACACATAAACTCGGGTATCACG
CGGTGGAAGGAGCAGCCTTTGTAGCCGTAGCCCTGCTCGTGGGTGCACAA
TTGCCGAAAGTTCTCCGCCGTCTTCGGCACCACATCTGCCCGGAGGAGCA
TCACAATGCGACCGGCGTCATTGCCACCAATCCGTATGTCAAAGAAGACT
TGTGGATTGCGTTTCTCTGCCTTTTCGATGACTGCCGGCCCGGTGGATGG
TGTTTCCACTTTCTCTGCCTCCGGTTCGCCTTCCGGCTGCAACGTGGCTC
CCGCATGCTTCTGCAACCAGTCGTCATCTGCCCAGATAGGCTTGAAACTG
TCCTCCTTAACGCGCACTGGTTTCGCCAAGTTCACGCGAATTGTGCGTCC
GCAGAGCTCGGAGTCATTCATATTATCAATGGCAGCAGCCGCATCCTCGC
TCTGTTCGTATTCTATAAAGGCGAATCCGCGGTGTCGCTGTGATTCGTAG
TCCGCCGGCATTTGGATATCTGCAATATCCCCAAAGGGTATAAAGGCATT
GTTCAGCAGTCTCTCTGTGACCTCGTCAGCCAGGCCGCCCACATAAATGG
GTGCGCTTGTCGTTAGACATGTCGACTGATAACT

BS06194.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4886-PA 903 cyp33-RA 20..903 900..17 4420 100 Minus
CG9916-PA 684 Cyp1-RA 382..453 322..251 185 90.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:25:05
Subject Length Description Subject Range Query Range Score Percent Strand
cyp33-RA 986 CG4886-RA 67..980 921..9 4510 99.7 Minus
Cyp1-RA 1227 CG9916-RA 302..613 436..125 555 78.9 Minus
CG7768-RB 679 CG7768-RB 166..477 436..125 285 74.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:24:57
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17545553..17545937 719..335 1925 100 Minus
2R 25286936 2R 17545288..17545489 921..719 965 99.5 Minus
2R 25286936 2R 17545994..17546166 334..162 865 100 Minus
2R 25286936 2R 17546240..17546385 161..16 730 100 Minus
X 23542271 X 16318287..16318598 125..436 555 78.5 Plus
3L 28110227 3L 14218461..14218772 436..125 270 72.4 Minus
Blast to na_te.dros performed on 2015-02-11 17:25:01 has no hits.

BS06194.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:40 Download gff for BS06194.3prime
Subject Subject Range Query Range Percent Splice Strand
cyp33-PA 1..903 17..920 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:15 Download gff for BS06194.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4886-PA 1..903 17..920 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:50:41 Download gff for BS06194.3prime
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 67..980 9..921 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:43 Download gff for BS06194.3prime
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 67..980 9..921 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:43 Download gff for BS06194.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 17546240..17546394 9..161 98   Minus
2R 17545288..17545489 719..921 99 -> Minus
2R 17545554..17545937 335..718 100 -> Minus
2R 17545994..17546166 162..334 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:50:41 Download gff for BS06194.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13432793..13432994 719..921 99 -> Minus
arm_2R 13433059..13433442 335..718 100 -> Minus
arm_2R 13433499..13433671 162..334 100 -> Minus
arm_2R 13433745..13433899 9..161 98   Minus

BS06194.5prime Sequence

833 bp (779 high quality bases) assembled on 2005-12-03

> BS06194.5prime
GAAGTTATCAGTCGACATGTCTAACGACAAGCGCACCATTTATGTGGGCG
GCCTGGCTGACGAGGTCACAGAGAGACTGCTGAACAATGCCTTTATACCC
TTTGGGGATATTGCAGATATCCAAATGCCGGCGGACTACGAATCACAGCG
ACACCGCGGATTCGCCTTTATAGAATACGAACAGAGCGAGGATGCGGCTG
CTGCCATTGATAATATGAATGACTCCGAGCTCTGCGGACGCACAATTCGC
GTGAACTTGGCGAAACCAGTGCGCGTTAAGGAGGACAGTTTCAAGCCTAT
CTGGGCAGATGACGACTGGTTGCAGAAGCATGCGGGAGCCACGTTGCAGC
CGGAAGGCGAACCGGAGGCAGAGAAAGTGGAAACACCATCCACCGGGCCG
GCAGTCATCGAAAAGGCAGAGAAACGCAATCCACAAGTCTTCTTTGACAT
ACGGATTGGTGGCAATGACGCCGGTCGCATTGTGATGCTCCTCCGGGCAG
ATGTGGTGCCGAAGACGGCGGAGAACTTTCGGCAATTGTGCACCCACGAG
CAGGGCTACGGCTACAAAGGCTGCTCCTTCCACCGCGTGATACCCGAGTT
TATGTGTCAAGGAGGCGACTTCACCAACAACAATGGCACCGGCGGCAAGT
CCATCTATGGCAAAAAGTTCAACGATGAGAACTTCAATCTGAAACACAAC
AGTTTTGGAACTCTTTCAATGGCCAACTCGGGGCGCAACACAAATGGCTC
GCAGTTTTTTATATGTACCACAAAAACAGATTGGCTGGACAACCAGCACG
TCGTTTTTGGCCATGTCATCAGTGGCGCCGAGG

BS06194.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4886-PA 903 cyp33-RA 1..716 17..732 3580 100 Plus
CG4886-PA 903 cyp33-RA 720..817 736..833 465 98.9 Plus
CG9916-PA 684 Cyp1-RA 382..453 614..685 185 90.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:06
Subject Length Description Subject Range Query Range Score Percent Strand
cyp33-RA 986 CG4886-RA 67..884 16..833 4030 99.6 Plus
Cyp1-RA 1227 CG9916-RA 302..613 500..811 495 78 Plus
CG7768-RB 679 CG7768-RB 166..477 500..811 255 74.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17545553..17545937 217..601 1925 100 Plus
2R 25286936 2R 17545288..17545489 16..217 1010 100 Plus
2R 25286936 2R 17545994..17546166 602..774 820 98.3 Plus
X 23542271 X 16318287..16318598 811..500 495 77.2 Minus
2R 25286936 2R 17546240..17546298 775..833 280 98.3 Plus
3L 28110227 3L 14218461..14218772 500..811 240 71.8 Plus
Blast to na_te.dros performed on 2015-02-11 09:35:05 has no hits.

BS06194.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:41 Download gff for BS06194.5prime
Subject Subject Range Query Range Percent Splice Strand
cyp33-PA 1..817 17..833 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:17 Download gff for BS06194.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4886-PA 1..817 17..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:15:21 Download gff for BS06194.5prime
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 67..884 16..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:57 Download gff for BS06194.5prime
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 67..884 16..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:57 Download gff for BS06194.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 17545288..17545489 16..217 100 -> Plus
2R 17545554..17545937 218..601 100 -> Plus
2R 17545994..17546166 602..774 98 -> Plus
2R 17546240..17546298 775..833 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:15:21 Download gff for BS06194.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13432793..13432994 16..217 100 -> Plus
arm_2R 13433059..13433442 218..601 100 -> Plus
arm_2R 13433499..13433671 602..774 98 -> Plus
arm_2R 13433745..13433803 775..833 98   Plus

BS06194.complete Sequence

935 bp (935 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635391

> BS06194.complete
GAAGTTATCAGTCGACATGTCTAACGACAAGCGCACCATTTATGTGGGCG
GCCTGGCTGACGAGGTCACAGAGAGACTGCTGAACAATGCCTTTATACCC
TTTGGGGATATTGCAGATATCCAAATGCCGGCGGACTACGAATCACAGCG
ACACCGCGGATTCGCCTTTATAGAATACGAACAGAGCGAGGATGCGGCTG
CTGCCATTGATAATATGAATGACTCCGAGCTCTGCGGACGCACAATTCGC
GTGAACTTGGCGAAACCAGTGCGCGTTAAGGAGGACAGTTTCAAGCCTAT
CTGGGCAGATGACGACTGGTTGCAGAAGCATGCGGGAGCCACGTTGCAGC
CGGAAGGCGAACCGGAGGCAGAGAAAGTGGAAACACCATCCACCGGGCCG
GCAGTCATCGAAAAGGCAGAGAAACGCAATCCACAAGTCTTCTTTGACAT
ACGGATTGGTGGCAATGACGCCGGTCGCATTGTGATGCTCCTCCGGGCAG
ATGTGGTGCCGAAGACGGCGGAGAACTTTCGGCAATTGTGCACCCACGAG
CAGGGCTACGGCTACAAAGGCTGCTCCTTCCACCGCGTGATACCCGAGTT
TATGTGTCAAGGAGGCGACTTCACCAACAACAATGGCACCGGCGGCAAGT
CCATCTATGGCAAAAAGTTCAACGATGAGAACTTCAATCTGAAACACAAC
AGTTTTGGAACTCTTTCAATGGCCAACTCGGGCGCCAACACAAATGGCTC
GCAGTTTTTTATATGTACCACAAAAACAGATTGGCTGGACAACAAGCACG
TCGTTTTTGGCCATGTCATCAGTGGCGCCGAGGTGGTGCGCAAGATGGAA
CGTTGTGGCTCCAAGTCGGGCACTCCCAGCCAAAAGATTGTCATATACTC
CTGTGGAGAACTCAAATAAAAGCTTTCTAGACCAT

BS06194.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:44
Subject Length Description Subject Range Query Range Score Percent Strand
cyp33-RA 903 CG4886-PA 1..903 17..919 4515 100 Plus
Cyp1-RA 684 CG9916-PA 268..579 500..811 555 78.5 Plus
CG7768-RB 495 CG7768-PB 79..390 500..811 270 72.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:45
Subject Length Description Subject Range Query Range Score Percent Strand
cyp33-RA 986 CG4886-RA 67..971 16..920 4525 100 Plus
Cyp1-RA 1227 CG9916-RA 302..613 500..811 555 78.5 Plus
CG7768-RB 679 CG7768-RB 166..477 500..811 270 72.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17545553..17545937 217..601 1925 100 Plus
2R 25286936 2R 17545288..17545489 16..217 1010 100 Plus
2R 25286936 2R 17545994..17546166 602..774 865 100 Plus
2R 25286936 2R 17546240..17546385 775..920 730 100 Plus
X 23542271 X 16318287..16318598 811..500 555 78.5 Minus
3L 28110227 3L 14218461..14218772 500..811 270 72.4 Plus
Blast to na_te.dros performed on 2014-11-27 06:46:43 has no hits.

BS06194.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:37 Download gff for BS06194.complete
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 1..903 17..919 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:20 Download gff for BS06194.complete
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 397..1310 16..927 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:53 Download gff for BS06194.complete
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 68..968 17..917 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:37 Download gff for BS06194.complete
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 397..1310 16..927 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:05 Download gff for BS06194.complete
Subject Subject Range Query Range Percent Splice Strand
cyp33-RA 68..968 17..917 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:05 Download gff for BS06194.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17545289..17545489 17..217 100 -> Plus
2R 17545554..17545937 218..601 100 -> Plus
2R 17545994..17546166 602..774 100 -> Plus
2R 17546240..17546382 775..917 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:53 Download gff for BS06194.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13432794..13432994 17..217 100 -> Plus
arm_2R 13433059..13433442 218..601 100 -> Plus
arm_2R 13433499..13433671 602..774 100 -> Plus
arm_2R 13433745..13433887 775..917 100   Plus

BS06194.pep Sequence

Translation from 16 to 918

> BS06194.pep
MSNDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFA
FIEYEQSEDAAAAIDNMNDSELCGRTIRVNLAKPVRVKEDSFKPIWADDD
WLQKHAGATLQPEGEPEAEKVETPSTGPAVIEKAEKRNPQVFFDIRIGGN
DAGRIVMLLRADVVPKTAENFRQLCTHEQGYGYKGCSFHRVIPEFMCQGG
DFTNNNGTGGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFFIC
TTKTDWLDNKHVVFGHVISGAEVVRKMERCGSKSGTPSQKIVIYSCGELK
*

BS06194.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:16
Subject Length Description Subject Range Query Range Score Percent Strand
cyp33-PA 300 CG4886-PA 1..300 1..300 1600 100 Plus
CG7768-PB 164 CG7768-PB 4..164 139..299 625 70.8 Plus
CG7768-PA 164 CG7768-PA 4..164 139..299 625 70.8 Plus
Cyp1-PA 227 CG9916-PA 59..227 133..299 611 68.6 Plus
CG2852-PD 205 CG2852-PD 18..190 121..299 481 54.4 Plus