Clone Sequence Records
BS06194.3prime Sequence
934 bp (765 high quality bases) assembled on 2005-12-03
> BS06194.3prime
ATGGTCTAGAAAGCTTTTATTTGAGTTCTCCACAGGAGTATATGACAATC
TTTTGGCTGGGAGTGCCCGACTTGGAGCCACAACGTTCCATCTTGCGCAC
CACCTCGGCGCCACTGATGACATGGCCAAAAACGACGTGCTTGTTGTCCA
GCCAATCTGTTTTTGTGGTACATATAAAAAACTGCGAGCCATTTGTGTTG
GCGCCCGAGTTGGCCATTGAAAGAGTTCCAAAACTGTTGTGTTTCAGATT
GAAGTTCTCATCGTTGAACTTTTTGCCATAGATGGACTTGCCGCCGGTGC
CATTGTTGTTGGTGAAGTCGCCTCCTTGACACATAAACTCGGGTATCACG
CGGTGGAAGGAGCAGCCTTTGTAGCCGTAGCCCTGCTCGTGGGTGCACAA
TTGCCGAAAGTTCTCCGCCGTCTTCGGCACCACATCTGCCCGGAGGAGCA
TCACAATGCGACCGGCGTCATTGCCACCAATCCGTATGTCAAAGAAGACT
TGTGGATTGCGTTTCTCTGCCTTTTCGATGACTGCCGGCCCGGTGGATGG
TGTTTCCACTTTCTCTGCCTCCGGTTCGCCTTCCGGCTGCAACGTGGCTC
CCGCATGCTTCTGCAACCAGTCGTCATCTGCCCAGATAGGCTTGAAACTG
TCCTCCTTAACGCGCACTGGTTTCGCCAAGTTCACGCGAATTGTGCGTCC
GCAGAGCTCGGAGTCATTCATATTATCAATGGCAGCAGCCGCATCCTCGC
TCTGTTCGTATTCTATAAAGGCGAATCCGCGGTGTCGCTGTGATTCGTAG
TCCGCCGGCATTTGGATATCTGCAATATCCCCAAAGGGTATAAAGGCATT
GTTCAGCAGTCTCTCTGTGACCTCGTCAGCCAGGCCGCCCACATAAATGG
GTGCGCTTGTCGTTAGACATGTCGACTGATAACT
BS06194.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4886-PA | 903 | cyp33-RA | 20..903 | 900..17 | 4420 | 100 | Minus |
CG9916-PA | 684 | Cyp1-RA | 382..453 | 322..251 | 185 | 90.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:25:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cyp33-RA | 986 | CG4886-RA | 67..980 | 921..9 | 4510 | 99.7 | Minus |
Cyp1-RA | 1227 | CG9916-RA | 302..613 | 436..125 | 555 | 78.9 | Minus |
CG7768-RB | 679 | CG7768-RB | 166..477 | 436..125 | 285 | 74.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:24:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17545553..17545937 | 719..335 | 1925 | 100 | Minus |
2R | 25286936 | 2R | 17545288..17545489 | 921..719 | 965 | 99.5 | Minus |
2R | 25286936 | 2R | 17545994..17546166 | 334..162 | 865 | 100 | Minus |
2R | 25286936 | 2R | 17546240..17546385 | 161..16 | 730 | 100 | Minus |
X | 23542271 | X | 16318287..16318598 | 125..436 | 555 | 78.5 | Plus |
3L | 28110227 | 3L | 14218461..14218772 | 436..125 | 270 | 72.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:25:01 has no hits.
BS06194.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:40 Download gff for
BS06194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyp33-PA | 1..903 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:15 Download gff for
BS06194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4886-PA | 1..903 | 17..920 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:50:41 Download gff for
BS06194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyp33-RA | 67..980 | 9..921 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:25:43 Download gff for
BS06194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyp33-RA | 67..980 | 9..921 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:25:43 Download gff for
BS06194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17546240..17546394 | 9..161 | 98 | | Minus |
2R | 17545288..17545489 | 719..921 | 99 | -> | Minus |
2R | 17545554..17545937 | 335..718 | 100 | -> | Minus |
2R | 17545994..17546166 | 162..334 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:50:41 Download gff for
BS06194.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13432793..13432994 | 719..921 | 99 | -> | Minus |
arm_2R | 13433059..13433442 | 335..718 | 100 | -> | Minus |
arm_2R | 13433499..13433671 | 162..334 | 100 | -> | Minus |
arm_2R | 13433745..13433899 | 9..161 | 98 | | Minus |
BS06194.5prime Sequence
833 bp (779 high quality bases) assembled on 2005-12-03
> BS06194.5prime
GAAGTTATCAGTCGACATGTCTAACGACAAGCGCACCATTTATGTGGGCG
GCCTGGCTGACGAGGTCACAGAGAGACTGCTGAACAATGCCTTTATACCC
TTTGGGGATATTGCAGATATCCAAATGCCGGCGGACTACGAATCACAGCG
ACACCGCGGATTCGCCTTTATAGAATACGAACAGAGCGAGGATGCGGCTG
CTGCCATTGATAATATGAATGACTCCGAGCTCTGCGGACGCACAATTCGC
GTGAACTTGGCGAAACCAGTGCGCGTTAAGGAGGACAGTTTCAAGCCTAT
CTGGGCAGATGACGACTGGTTGCAGAAGCATGCGGGAGCCACGTTGCAGC
CGGAAGGCGAACCGGAGGCAGAGAAAGTGGAAACACCATCCACCGGGCCG
GCAGTCATCGAAAAGGCAGAGAAACGCAATCCACAAGTCTTCTTTGACAT
ACGGATTGGTGGCAATGACGCCGGTCGCATTGTGATGCTCCTCCGGGCAG
ATGTGGTGCCGAAGACGGCGGAGAACTTTCGGCAATTGTGCACCCACGAG
CAGGGCTACGGCTACAAAGGCTGCTCCTTCCACCGCGTGATACCCGAGTT
TATGTGTCAAGGAGGCGACTTCACCAACAACAATGGCACCGGCGGCAAGT
CCATCTATGGCAAAAAGTTCAACGATGAGAACTTCAATCTGAAACACAAC
AGTTTTGGAACTCTTTCAATGGCCAACTCGGGGCGCAACACAAATGGCTC
GCAGTTTTTTATATGTACCACAAAAACAGATTGGCTGGACAACCAGCACG
TCGTTTTTGGCCATGTCATCAGTGGCGCCGAGG
BS06194.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4886-PA | 903 | cyp33-RA | 1..716 | 17..732 | 3580 | 100 | Plus |
CG4886-PA | 903 | cyp33-RA | 720..817 | 736..833 | 465 | 98.9 | Plus |
CG9916-PA | 684 | Cyp1-RA | 382..453 | 614..685 | 185 | 90.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:35:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cyp33-RA | 986 | CG4886-RA | 67..884 | 16..833 | 4030 | 99.6 | Plus |
Cyp1-RA | 1227 | CG9916-RA | 302..613 | 500..811 | 495 | 78 | Plus |
CG7768-RB | 679 | CG7768-RB | 166..477 | 500..811 | 255 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17545553..17545937 | 217..601 | 1925 | 100 | Plus |
2R | 25286936 | 2R | 17545288..17545489 | 16..217 | 1010 | 100 | Plus |
2R | 25286936 | 2R | 17545994..17546166 | 602..774 | 820 | 98.3 | Plus |
X | 23542271 | X | 16318287..16318598 | 811..500 | 495 | 77.2 | Minus |
2R | 25286936 | 2R | 17546240..17546298 | 775..833 | 280 | 98.3 | Plus |
3L | 28110227 | 3L | 14218461..14218772 | 500..811 | 240 | 71.8 | Plus |
Blast to na_te.dros performed on 2015-02-11 09:35:05 has no hits.
BS06194.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:41 Download gff for
BS06194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyp33-PA | 1..817 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:17 Download gff for
BS06194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4886-PA | 1..817 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:15:21 Download gff for
BS06194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyp33-RA | 67..884 | 16..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:07:57 Download gff for
BS06194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyp33-RA | 67..884 | 16..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:07:57 Download gff for
BS06194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17545288..17545489 | 16..217 | 100 | -> | Plus |
2R | 17545554..17545937 | 218..601 | 100 | -> | Plus |
2R | 17545994..17546166 | 602..774 | 98 | -> | Plus |
2R | 17546240..17546298 | 775..833 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:15:21 Download gff for
BS06194.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13432793..13432994 | 16..217 | 100 | -> | Plus |
arm_2R | 13433059..13433442 | 218..601 | 100 | -> | Plus |
arm_2R | 13433499..13433671 | 602..774 | 98 | -> | Plus |
arm_2R | 13433745..13433803 | 775..833 | 98 | | Plus |
BS06194.complete Sequence
935 bp (935 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635391
> BS06194.complete
GAAGTTATCAGTCGACATGTCTAACGACAAGCGCACCATTTATGTGGGCG
GCCTGGCTGACGAGGTCACAGAGAGACTGCTGAACAATGCCTTTATACCC
TTTGGGGATATTGCAGATATCCAAATGCCGGCGGACTACGAATCACAGCG
ACACCGCGGATTCGCCTTTATAGAATACGAACAGAGCGAGGATGCGGCTG
CTGCCATTGATAATATGAATGACTCCGAGCTCTGCGGACGCACAATTCGC
GTGAACTTGGCGAAACCAGTGCGCGTTAAGGAGGACAGTTTCAAGCCTAT
CTGGGCAGATGACGACTGGTTGCAGAAGCATGCGGGAGCCACGTTGCAGC
CGGAAGGCGAACCGGAGGCAGAGAAAGTGGAAACACCATCCACCGGGCCG
GCAGTCATCGAAAAGGCAGAGAAACGCAATCCACAAGTCTTCTTTGACAT
ACGGATTGGTGGCAATGACGCCGGTCGCATTGTGATGCTCCTCCGGGCAG
ATGTGGTGCCGAAGACGGCGGAGAACTTTCGGCAATTGTGCACCCACGAG
CAGGGCTACGGCTACAAAGGCTGCTCCTTCCACCGCGTGATACCCGAGTT
TATGTGTCAAGGAGGCGACTTCACCAACAACAATGGCACCGGCGGCAAGT
CCATCTATGGCAAAAAGTTCAACGATGAGAACTTCAATCTGAAACACAAC
AGTTTTGGAACTCTTTCAATGGCCAACTCGGGCGCCAACACAAATGGCTC
GCAGTTTTTTATATGTACCACAAAAACAGATTGGCTGGACAACAAGCACG
TCGTTTTTGGCCATGTCATCAGTGGCGCCGAGGTGGTGCGCAAGATGGAA
CGTTGTGGCTCCAAGTCGGGCACTCCCAGCCAAAAGATTGTCATATACTC
CTGTGGAGAACTCAAATAAAAGCTTTCTAGACCAT
BS06194.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:46:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cyp33-RA | 903 | CG4886-PA | 1..903 | 17..919 | 4515 | 100 | Plus |
Cyp1-RA | 684 | CG9916-PA | 268..579 | 500..811 | 555 | 78.5 | Plus |
CG7768-RB | 495 | CG7768-PB | 79..390 | 500..811 | 270 | 72.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:46:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cyp33-RA | 986 | CG4886-RA | 67..971 | 16..920 | 4525 | 100 | Plus |
Cyp1-RA | 1227 | CG9916-RA | 302..613 | 500..811 | 555 | 78.5 | Plus |
CG7768-RB | 679 | CG7768-RB | 166..477 | 500..811 | 270 | 72.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:46:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 17545553..17545937 | 217..601 | 1925 | 100 | Plus |
2R | 25286936 | 2R | 17545288..17545489 | 16..217 | 1010 | 100 | Plus |
2R | 25286936 | 2R | 17545994..17546166 | 602..774 | 865 | 100 | Plus |
2R | 25286936 | 2R | 17546240..17546385 | 775..920 | 730 | 100 | Plus |
X | 23542271 | X | 16318287..16318598 | 811..500 | 555 | 78.5 | Minus |
3L | 28110227 | 3L | 14218461..14218772 | 500..811 | 270 | 72.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:46:43 has no hits.
BS06194.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:37 Download gff for
BS06194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyp33-RA | 1..903 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:20 Download gff for
BS06194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyp33-RA | 397..1310 | 16..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:53:53 Download gff for
BS06194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyp33-RA | 68..968 | 17..917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:37 Download gff for
BS06194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyp33-RA | 397..1310 | 16..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:54:05 Download gff for
BS06194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cyp33-RA | 68..968 | 17..917 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:54:05 Download gff for
BS06194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 17545289..17545489 | 17..217 | 100 | -> | Plus |
2R | 17545554..17545937 | 218..601 | 100 | -> | Plus |
2R | 17545994..17546166 | 602..774 | 100 | -> | Plus |
2R | 17546240..17546382 | 775..917 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:53:53 Download gff for
BS06194.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13432794..13432994 | 17..217 | 100 | -> | Plus |
arm_2R | 13433059..13433442 | 218..601 | 100 | -> | Plus |
arm_2R | 13433499..13433671 | 602..774 | 100 | -> | Plus |
arm_2R | 13433745..13433887 | 775..917 | 100 | | Plus |
BS06194.pep Sequence
Translation from 16 to 918
> BS06194.pep
MSNDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFA
FIEYEQSEDAAAAIDNMNDSELCGRTIRVNLAKPVRVKEDSFKPIWADDD
WLQKHAGATLQPEGEPEAEKVETPSTGPAVIEKAEKRNPQVFFDIRIGGN
DAGRIVMLLRADVVPKTAENFRQLCTHEQGYGYKGCSFHRVIPEFMCQGG
DFTNNNGTGGKSIYGKKFNDENFNLKHNSFGTLSMANSGANTNGSQFFIC
TTKTDWLDNKHVVFGHVISGAEVVRKMERCGSKSGTPSQKIVIYSCGELK
*
BS06194.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cyp33-PA | 300 | CG4886-PA | 1..300 | 1..300 | 1600 | 100 | Plus |
CG7768-PB | 164 | CG7768-PB | 4..164 | 139..299 | 625 | 70.8 | Plus |
CG7768-PA | 164 | CG7768-PA | 4..164 | 139..299 | 625 | 70.8 | Plus |
Cyp1-PA | 227 | CG9916-PA | 59..227 | 133..299 | 611 | 68.6 | Plus |
CG2852-PD | 205 | CG2852-PD | 18..190 | 121..299 | 481 | 54.4 | Plus |