Clone BS06196 Report

Search the DGRC for BS06196

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:61
Well:96
Vector:pDNR-Dual
Associated Gene/TranscriptCycC-RA
Protein status:BS06196.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06196.3prime Sequence

834 bp (749 high quality bases) assembled on 2005-12-03

> BS06196.3prime
ATGGTCTAGAAAGCTTCTAACGCTGAGGCGGTGGTTTCGGTTTCGGAATC
TTGGACAGCAGCATCTGAATCTCGTCCTTTTCCTTCCAGTCCTTCCACAA
CTCGTACAGATTTACAATGGCGCGCACGATCTCCTGGACCTTGTCTAAAT
CAACATTCAATTCTGCGAACCACTGCTTCGTGGCGTCCTTTTGCAGGATG
ACGCAGGCGATTTGAAGGCAGGCTATAGCGATCTGGTAAGGAGGATAGAG
CAGGCAGACATCGGTGCGCAGGGAATCGTTTACGATACGCCAGCTCAGGG
TGAGCAACTGGTCCTCCTGGCCCATGTCCTGAACCAGCTGCAGCAGCGGT
CTGTACGGCTGGTAGACAATCAAGCAGCAATCCAGGTTCTCCAGCAGGTA
AAACTCGCACTCCAGGATGTGATTGGTGCGGTAGGGAAACTCCTGAGCGT
ACGCATAGCTGAACTTTGTCTTAATGGCCGACTGGCAGATCGAGATCAGT
CGTGAATTGGAAATGACACCGAACTCCTCCACCTTCGAGGCCAGCAAGAT
GCAAGTGGGCGCCAGCAGCAGAGGATCGATGTTCTTCAGGGAGTTCCTCG
CATAGAATCTCTTGAAGTAAACCGTCGCCGTGGCGATGACCTGTTGCCTC
AGCTTTAGCTGCTCGCCGAGCACCTGGATCACATTTGCGAAGAAAATAAA
CACCTTTTGGTATTCATCCTCGTTAAGGGCCAACAAATCGTGCTGACGCT
CCCGGAGCAGATCGGGTTTGTCCAAAATCCACTGCTGCGAGTGCGAACTC
TGCCAAAAATTGCCCGCCATGTCGACTGATAACT

BS06196.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7281-PA 804 CycC-RA 1..804 820..17 4020 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
CycC-RA 1142 CG7281-RA 145..955 824..14 4040 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:11:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14889470..14890061 233..824 2945 99.8 Plus
3R 32079331 3R 14889191..14889411 14..234 1105 100 Plus
Blast to na_te.dros performed on 2015-01-30 15:11:03 has no hits.

BS06196.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:42 Download gff for BS06196.3prime
Subject Subject Range Query Range Percent Splice Strand
CycC-PA 1..804 17..820 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:18 Download gff for BS06196.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7281-PA 1..804 17..820 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:10:39 Download gff for BS06196.3prime
Subject Subject Range Query Range Percent Splice Strand
CycC-RA 133..943 14..824 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:40:22 Download gff for BS06196.3prime
Subject Subject Range Query Range Percent Splice Strand
CycC-RA 145..955 14..824 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:40:22 Download gff for BS06196.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 14889191..14889409 14..232 100 <- Plus
3R 14889470..14890061 233..824 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:10:39 Download gff for BS06196.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10714913..10715131 14..232 100 <- Plus
arm_3R 10715192..10715783 233..824 99   Plus

BS06196.5prime Sequence

752 bp (672 high quality bases) assembled on 2005-12-03

> BS06196.5prime
GAAGTTATCAGTCGACATGGCGGGCAATTTTTGGCAGAGTTCGCACTCGC
AGCAGTGGATTTTGGACAAACCCGATCTGCTCCGGGAGCGTCAGCACGAT
TTGTTGGCCCTTAACGAGGATGAATACCAAAAGGTGTTTATTTTCTTCGC
AAATGTGATCCAGGTGCTCGGCGAGCAGCTAAAGCTGAGGCAACAGGTCA
TCGCCACGGCGACGGTTTACTTCAAGAGATTCTATGCGAGGAACTCCCTG
AAGAACATCGATCCTCTGCTGCTGGCGCCCACTTGCATCTTGCTGGCCTC
GAAGGTGGAGGAGTTCGGTGTCATTTCCAATTCACGACTGATCTCGATCT
GCCAGTCGGCCATTAAGACAAAGTTCAGCTATGCGTACGCTCAGGAGTTT
CCCTACCGCACCAATCACATCCTGGAGTGCGAGTTTTACCTGCTGGAGAA
CCTGGATTGCTGCTTGATTGTCTACCAGCCGTACAGACCGCTGCTGCAGC
TGGTTCAGGACATGGGCCAGGAGGACCAGTTGCTCACCCTGAGCTGGCGT
ATCGTAAACGATTCCCTGCGCACCGATGTCTGCCTGCTCTATCCTCCTTA
CCAGATCGCTATAGCCTGCCTTCAAATCGCCTGCGTCATCCTGCAAAAGG
ACGCCACGAAGCAGTGGTTCGCAGAATTGAATGTTGATTTAGACAAGGTC
CAGGAGATCGTGCGCGCCATTGTAAATCTGTACGAGTTGTGGAAGGACTG
GA

BS06196.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG7281-PA 804 CycC-RA 1..736 17..752 3680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
CycC-RA 1142 CG7281-RA 145..884 13..752 3685 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14889470..14890061 604..13 2945 99.8 Minus
3R 32079331 3R 14889262..14889411 752..603 750 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:21:06 has no hits.

BS06196.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:43 Download gff for BS06196.5prime
Subject Subject Range Query Range Percent Splice Strand
CycC-PA 1..735 17..751 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:19 Download gff for BS06196.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7281-PA 1..735 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:33:08 Download gff for BS06196.5prime
Subject Subject Range Query Range Percent Splice Strand
CycC-RA 133..871 13..751 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:56 Download gff for BS06196.5prime
Subject Subject Range Query Range Percent Splice Strand
CycC-RA 145..883 13..751 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:56 Download gff for BS06196.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 14889263..14889409 605..751 100 <- Minus
3R 14889470..14890061 13..604 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:33:08 Download gff for BS06196.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10714985..10715131 605..751 100 <- Minus
arm_3R 10715192..10715783 13..604 99   Minus

BS06196.complete Sequence

836 bp (836 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635392

> BS06196.complete
GAAGTTATCAGTCGACATGGCGGGCAATTTTTGGCAGAGTTCGCACTCGC
AGCAGTGGATTTTGGACAAACCCGATCTGCTCCGGGAGCGTCAGCACGAT
TTGTTGGCCCTTAACGAGGATGAATACCAAAAGGTGTTTATTTTCTTCGC
AAATGTGATCCAGGTGCTCGGCGAGCAGCTAAAGCTGAGGCAACAGGTCA
TCGCCACGGCGACGGTTTACTTCAAGAGATTCTATGCGAGGAACTCCCTG
AAGAACATCGATCCTCTGCTGCTGGCGCCCACTTGCATCTTGCTGGCCTC
GAAGGTGGAGGAGTTCGGTGTCATTTCCAATTCACGACTGATCTCGATCT
GCCAGTCGGCCATTAAGACAAAGTTCAGCTATGCGTACGCTCAGGAGTTT
CCCTACCGCACCAATCACATCCTGGAGTGCGAGTTTTACCTGCTGGAGAA
CCTGGATTGCTGCTTGATTGTCTACCAGCCGTACAGACCGCTGCTGCAGC
TGGTTCAGGACATGGGCCAGGAGGACCAGTTGCTCACCCTGAGCTGGCGT
ATCGTAAACGATTCCCTGCGCACCGATGTCTGCCTGCTCTATCCTCCTTA
CCAGATCGCTATAGCCTGCCTTCAAATCGCCTGCGTCATCCTGCAAAAGG
ACGCCACGAAGCAGTGGTTCGCAGAATTGAATGTTGATTTAGACAAGGTC
CAGGAGATCGTGCGCGCCATTGTAAATCTGTACGAGTTGTGGAAGGACTG
GAAGGAAAAGGACGAGATTCAGATGCTGCTGTCCAAGATTCCGAAACCGA
AACCACCGCCTCAGCGTTAGAAGCTTTCTAGACCAT

BS06196.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:50
Subject Length Description Subject Range Query Range Score Percent Strand
CycC-RA 804 CG7281-PA 1..804 17..820 4020 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:51
Subject Length Description Subject Range Query Range Score Percent Strand
CycC-RA 1142 CG7281-RA 145..955 13..823 4040 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:52:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 14889470..14890061 604..13 2945 99.8 Minus
3R 32079331 3R 14889191..14889411 823..603 1105 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:52:49 has no hits.

BS06196.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:38 Download gff for BS06196.complete
Subject Subject Range Query Range Percent Splice Strand
CycC-RA 1..804 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:22 Download gff for BS06196.complete
Subject Subject Range Query Range Percent Splice Strand
CycC-RA 133..943 13..823 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:51 Download gff for BS06196.complete
Subject Subject Range Query Range Percent Splice Strand
CycC-RA 137..940 17..820 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:38 Download gff for BS06196.complete
Subject Subject Range Query Range Percent Splice Strand
CycC-RA 133..943 13..823 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:08 Download gff for BS06196.complete
Subject Subject Range Query Range Percent Splice Strand
CycC-RA 149..952 17..820 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:08 Download gff for BS06196.complete
Subject Subject Range Query Range Percent Splice Strand
3R 14889194..14889409 605..820 100 <- Minus
3R 14889470..14890057 17..604 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:51 Download gff for BS06196.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 10714916..10715131 605..820 100 <- Minus
arm_3R 10715192..10715779 17..604 100   Minus

BS06196.pep Sequence

Translation from 16 to 819

> BS06196.pep
MAGNFWQSSHSQQWILDKPDLLRERQHDLLALNEDEYQKVFIFFANVIQV
LGEQLKLRQQVIATATVYFKRFYARNSLKNIDPLLLAPTCILLASKVEEF
GVISNSRLISICQSAIKTKFSYAYAQEFPYRTNHILECEFYLLENLDCCL
IVYQPYRPLLQLVQDMGQEDQLLTLSWRIVNDSLRTDVCLLYPPYQIAIA
CLQIACVILQKDATKQWFAELNVDLDKVQEIVRAIVNLYELWKDWKEKDE
IQMLLSKIPKPKPPPQR*

BS06196.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:11
Subject Length Description Subject Range Query Range Score Percent Strand
CycC-PA 267 CG7281-PA 1..267 1..267 1398 100 Plus
CG16903-PA 560 CG16903-PA 106..332 32..250 209 27.7 Plus
CycK-PC 400 CG15218-PC 4..255 14..267 185 24.8 Plus
CycK-PB 400 CG15218-PB 4..255 14..267 185 24.8 Plus
CycK-PA 400 CG15218-PA 4..255 14..267 185 24.8 Plus