Clone Sequence Records
BS06196.3prime Sequence
834 bp (749 high quality bases) assembled on 2005-12-03
> BS06196.3prime
ATGGTCTAGAAAGCTTCTAACGCTGAGGCGGTGGTTTCGGTTTCGGAATC
TTGGACAGCAGCATCTGAATCTCGTCCTTTTCCTTCCAGTCCTTCCACAA
CTCGTACAGATTTACAATGGCGCGCACGATCTCCTGGACCTTGTCTAAAT
CAACATTCAATTCTGCGAACCACTGCTTCGTGGCGTCCTTTTGCAGGATG
ACGCAGGCGATTTGAAGGCAGGCTATAGCGATCTGGTAAGGAGGATAGAG
CAGGCAGACATCGGTGCGCAGGGAATCGTTTACGATACGCCAGCTCAGGG
TGAGCAACTGGTCCTCCTGGCCCATGTCCTGAACCAGCTGCAGCAGCGGT
CTGTACGGCTGGTAGACAATCAAGCAGCAATCCAGGTTCTCCAGCAGGTA
AAACTCGCACTCCAGGATGTGATTGGTGCGGTAGGGAAACTCCTGAGCGT
ACGCATAGCTGAACTTTGTCTTAATGGCCGACTGGCAGATCGAGATCAGT
CGTGAATTGGAAATGACACCGAACTCCTCCACCTTCGAGGCCAGCAAGAT
GCAAGTGGGCGCCAGCAGCAGAGGATCGATGTTCTTCAGGGAGTTCCTCG
CATAGAATCTCTTGAAGTAAACCGTCGCCGTGGCGATGACCTGTTGCCTC
AGCTTTAGCTGCTCGCCGAGCACCTGGATCACATTTGCGAAGAAAATAAA
CACCTTTTGGTATTCATCCTCGTTAAGGGCCAACAAATCGTGCTGACGCT
CCCGGAGCAGATCGGGTTTGTCCAAAATCCACTGCTGCGAGTGCGAACTC
TGCCAAAAATTGCCCGCCATGTCGACTGATAACT
BS06196.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7281-PA | 804 | CycC-RA | 1..804 | 820..17 | 4020 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycC-RA | 1142 | CG7281-RA | 145..955 | 824..14 | 4040 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:11:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14889470..14890061 | 233..824 | 2945 | 99.8 | Plus |
3R | 32079331 | 3R | 14889191..14889411 | 14..234 | 1105 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-30 15:11:03 has no hits.
BS06196.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:42 Download gff for
BS06196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-PA | 1..804 | 17..820 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:18 Download gff for
BS06196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7281-PA | 1..804 | 17..820 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:10:39 Download gff for
BS06196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-RA | 133..943 | 14..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:40:22 Download gff for
BS06196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-RA | 145..955 | 14..824 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:40:22 Download gff for
BS06196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14889191..14889409 | 14..232 | 100 | <- | Plus |
3R | 14889470..14890061 | 233..824 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:10:39 Download gff for
BS06196.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10714913..10715131 | 14..232 | 100 | <- | Plus |
arm_3R | 10715192..10715783 | 233..824 | 99 | | Plus |
BS06196.5prime Sequence
752 bp (672 high quality bases) assembled on 2005-12-03
> BS06196.5prime
GAAGTTATCAGTCGACATGGCGGGCAATTTTTGGCAGAGTTCGCACTCGC
AGCAGTGGATTTTGGACAAACCCGATCTGCTCCGGGAGCGTCAGCACGAT
TTGTTGGCCCTTAACGAGGATGAATACCAAAAGGTGTTTATTTTCTTCGC
AAATGTGATCCAGGTGCTCGGCGAGCAGCTAAAGCTGAGGCAACAGGTCA
TCGCCACGGCGACGGTTTACTTCAAGAGATTCTATGCGAGGAACTCCCTG
AAGAACATCGATCCTCTGCTGCTGGCGCCCACTTGCATCTTGCTGGCCTC
GAAGGTGGAGGAGTTCGGTGTCATTTCCAATTCACGACTGATCTCGATCT
GCCAGTCGGCCATTAAGACAAAGTTCAGCTATGCGTACGCTCAGGAGTTT
CCCTACCGCACCAATCACATCCTGGAGTGCGAGTTTTACCTGCTGGAGAA
CCTGGATTGCTGCTTGATTGTCTACCAGCCGTACAGACCGCTGCTGCAGC
TGGTTCAGGACATGGGCCAGGAGGACCAGTTGCTCACCCTGAGCTGGCGT
ATCGTAAACGATTCCCTGCGCACCGATGTCTGCCTGCTCTATCCTCCTTA
CCAGATCGCTATAGCCTGCCTTCAAATCGCCTGCGTCATCCTGCAAAAGG
ACGCCACGAAGCAGTGGTTCGCAGAATTGAATGTTGATTTAGACAAGGTC
CAGGAGATCGTGCGCGCCATTGTAAATCTGTACGAGTTGTGGAAGGACTG
GA
BS06196.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7281-PA | 804 | CycC-RA | 1..736 | 17..752 | 3680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycC-RA | 1142 | CG7281-RA | 145..884 | 13..752 | 3685 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14889470..14890061 | 604..13 | 2945 | 99.8 | Minus |
3R | 32079331 | 3R | 14889262..14889411 | 752..603 | 750 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:21:06 has no hits.
BS06196.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:43 Download gff for
BS06196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-PA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:19 Download gff for
BS06196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7281-PA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:33:08 Download gff for
BS06196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-RA | 133..871 | 13..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:56 Download gff for
BS06196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-RA | 145..883 | 13..751 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:56 Download gff for
BS06196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14889263..14889409 | 605..751 | 100 | <- | Minus |
3R | 14889470..14890061 | 13..604 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:33:08 Download gff for
BS06196.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10714985..10715131 | 605..751 | 100 | <- | Minus |
arm_3R | 10715192..10715783 | 13..604 | 99 | | Minus |
BS06196.complete Sequence
836 bp (836 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635392
> BS06196.complete
GAAGTTATCAGTCGACATGGCGGGCAATTTTTGGCAGAGTTCGCACTCGC
AGCAGTGGATTTTGGACAAACCCGATCTGCTCCGGGAGCGTCAGCACGAT
TTGTTGGCCCTTAACGAGGATGAATACCAAAAGGTGTTTATTTTCTTCGC
AAATGTGATCCAGGTGCTCGGCGAGCAGCTAAAGCTGAGGCAACAGGTCA
TCGCCACGGCGACGGTTTACTTCAAGAGATTCTATGCGAGGAACTCCCTG
AAGAACATCGATCCTCTGCTGCTGGCGCCCACTTGCATCTTGCTGGCCTC
GAAGGTGGAGGAGTTCGGTGTCATTTCCAATTCACGACTGATCTCGATCT
GCCAGTCGGCCATTAAGACAAAGTTCAGCTATGCGTACGCTCAGGAGTTT
CCCTACCGCACCAATCACATCCTGGAGTGCGAGTTTTACCTGCTGGAGAA
CCTGGATTGCTGCTTGATTGTCTACCAGCCGTACAGACCGCTGCTGCAGC
TGGTTCAGGACATGGGCCAGGAGGACCAGTTGCTCACCCTGAGCTGGCGT
ATCGTAAACGATTCCCTGCGCACCGATGTCTGCCTGCTCTATCCTCCTTA
CCAGATCGCTATAGCCTGCCTTCAAATCGCCTGCGTCATCCTGCAAAAGG
ACGCCACGAAGCAGTGGTTCGCAGAATTGAATGTTGATTTAGACAAGGTC
CAGGAGATCGTGCGCGCCATTGTAAATCTGTACGAGTTGTGGAAGGACTG
GAAGGAAAAGGACGAGATTCAGATGCTGCTGTCCAAGATTCCGAAACCGA
AACCACCGCCTCAGCGTTAGAAGCTTTCTAGACCAT
BS06196.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:52:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycC-RA | 804 | CG7281-PA | 1..804 | 17..820 | 4020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:52:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycC-RA | 1142 | CG7281-RA | 145..955 | 13..823 | 4040 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:52:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 14889470..14890061 | 604..13 | 2945 | 99.8 | Minus |
3R | 32079331 | 3R | 14889191..14889411 | 823..603 | 1105 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:52:49 has no hits.
BS06196.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:38 Download gff for
BS06196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-RA | 1..804 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:22 Download gff for
BS06196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-RA | 133..943 | 13..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:42:51 Download gff for
BS06196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-RA | 137..940 | 17..820 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:38 Download gff for
BS06196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-RA | 133..943 | 13..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:33:08 Download gff for
BS06196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CycC-RA | 149..952 | 17..820 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:33:08 Download gff for
BS06196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 14889194..14889409 | 605..820 | 100 | <- | Minus |
3R | 14889470..14890057 | 17..604 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:42:51 Download gff for
BS06196.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 10714916..10715131 | 605..820 | 100 | <- | Minus |
arm_3R | 10715192..10715779 | 17..604 | 100 | | Minus |
BS06196.pep Sequence
Translation from 16 to 819
> BS06196.pep
MAGNFWQSSHSQQWILDKPDLLRERQHDLLALNEDEYQKVFIFFANVIQV
LGEQLKLRQQVIATATVYFKRFYARNSLKNIDPLLLAPTCILLASKVEEF
GVISNSRLISICQSAIKTKFSYAYAQEFPYRTNHILECEFYLLENLDCCL
IVYQPYRPLLQLVQDMGQEDQLLTLSWRIVNDSLRTDVCLLYPPYQIAIA
CLQIACVILQKDATKQWFAELNVDLDKVQEIVRAIVNLYELWKDWKEKDE
IQMLLSKIPKPKPPPQR*
BS06196.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CycC-PA | 267 | CG7281-PA | 1..267 | 1..267 | 1398 | 100 | Plus |
CG16903-PA | 560 | CG16903-PA | 106..332 | 32..250 | 209 | 27.7 | Plus |
CycK-PC | 400 | CG15218-PC | 4..255 | 14..267 | 185 | 24.8 | Plus |
CycK-PB | 400 | CG15218-PB | 4..255 | 14..267 | 185 | 24.8 | Plus |
CycK-PA | 400 | CG15218-PA | 4..255 | 14..267 | 185 | 24.8 | Plus |