Clone BS06206 Report

Search the DGRC for BS06206

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:6
Vector:pDNR-Dual
Associated Gene/TranscriptDlc90F-RA
Protein status:BS06206.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06206.5prime Sequence

366 bp (365 high quality bases) assembled on 2005-12-03

> BS06206.5prime
GAAGTTATCAGTCGACATGGATGACTCACGCGAAGAAAGCCAGTTCATTG
TGGACGACGTGAGCAAGACGATTAAAGAGGCCATCGAGACGACCATCGGC
GGTAACGCCTACCAGCACGACAAGGTGAACAACTGGACCGGCCAGGTGGT
GGAGAACTGCCTGACGGTGCTCACCAAGGAGCAGAAGCCCTACAAGTACA
TTGTGACCGCCATGATCATGCAAAAGAACGGTGCTGGACTCCACACCGCC
AGCTCCTGCTACTGGAACAACGACACCGACGGATCGTGCACAGTACGCTG
GGAGAACAAGACCATGTACTGCATCGTTTCGGTCTTCGGACTGGCCGTCT
AGAAGCTTTCTAGACC

BS06206.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12363-PA 336 Dlc90F-RA 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 17:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
Dlc90F-RA 816 CG12363-RA 194..530 17..353 1685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 17:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18299422..18299758 17..353 1685 100 Plus
Blast to na_te.dros performed on 2015-02-12 17:06:59 has no hits.

BS06206.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:54 Download gff for BS06206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12363-PA 1..336 17..352 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:34 Download gff for BS06206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12363-PA 1..336 17..352 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 21:28:11 Download gff for BS06206.5prime
Subject Subject Range Query Range Percent Splice Strand
Dlc90F-RA 189..530 13..353 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:54:05 Download gff for BS06206.5prime
Subject Subject Range Query Range Percent Splice Strand
Dlc90F-RA 189..530 13..353 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:54:05 Download gff for BS06206.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18299417..18299753 13..348 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 21:28:11 Download gff for BS06206.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14125139..14125475 13..348 99 <- Plus

BS06206.3prime Sequence

366 bp (365 high quality bases) assembled on 2005-12-03

> BS06206.3prime
ATGGTCTAGAAAGCTTCTAGACGGCCAGTCCGAAGACCGAAACGATGCAG
TACATGGTCTTGTTCTCCCAGCGTACTGTGCACGATCCGTCGGTGTCGTT
GTTCCAGTAGCAGGAGCTGGCGGTGTGGAGTCCAGCACCGTTCTTTTGCA
TGATCATGGCGGTCACAATGTACTTGTAGGGCTTCTGCTCCTTGGTGAGC
ACCGTCAGGCAGTTCTCCACCACCTGGCCGGTCCAGTTGTTCACCTTGTC
GTGCTGGTAGGCGTTACCGCCGATGGTCGTCTCGATGGCCTCTTTAATCG
TCTTGCTCACGTCGTCCACAATGAACTGGCTTTCTTCGCGTGAGTCATCC
ATGTCGACTGATAACT

BS06206.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG12363-PA 336 Dlc90F-RA 1..336 352..17 1680 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dlc90F-RA 816 CG12363-RA 194..530 352..16 1685 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:04:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18299422..18299758 352..16 1685 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:04:31 has no hits.

BS06206.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:53 Download gff for BS06206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12363-PA 1..336 17..352 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:32 Download gff for BS06206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12363-PA 1..336 17..352 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:50:17 Download gff for BS06206.3prime
Subject Subject Range Query Range Percent Splice Strand
Dlc90F-RA 189..530 16..356 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:53:56 Download gff for BS06206.3prime
Subject Subject Range Query Range Percent Splice Strand
Dlc90F-RA 189..530 16..356 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:53:56 Download gff for BS06206.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18299417..18299753 21..356 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:50:17 Download gff for BS06206.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14125139..14125475 21..356 99 <- Minus

BS06206.complete Sequence

368 bp (368 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635393

> BS06206.complete
GAAGTTATCAGTCGACATGGATGACTCACGCGAAGAAAGCCAGTTCATTG
TGGACGACGTGAGCAAGACGATTAAAGAGGCCATCGAGACGACCATCGGC
GGTAACGCCTACCAGCACGACAAGGTGAACAACTGGACCGGCCAGGTGGT
GGAGAACTGCCTGACGGTGCTCACCAAGGAGCAGAAGCCCTACAAGTACA
TTGTGACCGCCATGATCATGCAAAAGAACGGTGCTGGACTCCACACCGCC
AGCTCCTGCTACTGGAACAACGACACCGACGGATCGTGCACAGTACGCTG
GGAGAACAAGACCATGTACTGCATCGTTTCGGTCTTCGGACTGGCCGTCT
AGAAGCTTTCTAGACCAT

BS06206.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dlc90F-RA 336 CG12363-PA 1..336 17..352 1680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:08:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dlc90F-RA 816 CG12363-RA 194..530 17..353 1685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:08:53
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18299422..18299758 17..353 1685 100 Plus
Blast to na_te.dros performed on 2014-11-27 11:08:54 has no hits.

BS06206.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:20:57 Download gff for BS06206.complete
Subject Subject Range Query Range Percent Splice Strand
Dlc90F-RA 1..336 17..352 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:53:23 Download gff for BS06206.complete
Subject Subject Range Query Range Percent Splice Strand
Dlc90F-RA 213..554 13..353 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:45:20 Download gff for BS06206.complete
Subject Subject Range Query Range Percent Splice Strand
Dlc90F-RA 194..529 17..352 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:20:57 Download gff for BS06206.complete
Subject Subject Range Query Range Percent Splice Strand
Dlc90F-RA 213..554 13..353 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:39:47 Download gff for BS06206.complete
Subject Subject Range Query Range Percent Splice Strand
Dlc90F-RA 194..529 17..352 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:39:47 Download gff for BS06206.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18299422..18299757 17..352 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:45:20 Download gff for BS06206.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 14125144..14125479 17..352 100   Plus

BS06206.pep Sequence

Translation from 16 to 351

> BS06206.pep
MDDSREESQFIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVENCLT
VLTKEQKPYKYIVTAMIMQKNGAGLHTASSCYWNNDTDGSCTVRWENKTM
YCIVSVFGLAV*

BS06206.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:39
Subject Length Description Subject Range Query Range Score Percent Strand
Dlc90F-PA 111 CG12363-PA 1..111 1..111 596 100 Plus