Clone Sequence Records
BS06208.3prime Sequence
974 bp (769 high quality bases) assembled on 2005-12-03
> BS06208.3prime
ATGGTCTAGAAAGCTTTTATTTGGTGGCCTTTTTGTCGGTTTCCTTCTCC
GGTTCACTTTCTGTGGTCTCGTCCTCTTCCTCATCATCATCATCGTCTTC
ATCGCTTTCATCATCGTAGTCTCCATCGGACTCATCTTCATCGTCATCAC
CCCCGTAGGAGTAGCCCCCACTGGCGGCGCCACCATAATAGCCACTGCCA
CCGGCTCCATAGTATCCACCGTATCCCTCCTCGTCGTCGCTGTTGCCTCC
TTGTTGCTGTCGCCCGAATTTGTGCGACCGCGTGGACATGCTGAGGTCCT
TGGTCACCGAGGTATCGTAGTTGCACTTGGGGCATGGAATTGGCTTGTTC
TTGTCGTACTTGAAGCCCTTGCGACGCACGTGATCCTCGCAGTAACAGGT
CTTGCAGCGCAGGCAGGAGTATTGACCCAGCTTGTTGCACGATTGACACT
TGTAGTTCTCCGACTCCAGCACCTGACAGCTGGCCTGGTGCTCGAACTGA
TCGTCCTCGCACAGGAATCCGTTGCAGAAGGAGCACTTGAAGATGCGCCC
ACCGTGCTCCCAGACACCGCGTTCGCACTCCAGGCAGGTCGCATTCTGCA
GCGGACACGTGCAGGCGTGGTTTTGGAGACACTTGCGTCCGTGGCAAACC
CAAGCCTCGCAGAAGTCGCAGATGGCGCCCACCATTCCGAGGCCCGTGGT
GTAGACGCCCGGATGTTTGACCACGCAGTCGCCGGTCTTTAGCATGCACT
TGATTTTCCCGCACTGGGCGCAAATGGGTAATCTCTGAATGCTCTGGCAG
AAATAGCAGAAGGCTCTCGACTTCTGCTTCTTCTCGCACTTGTCGCACTC
CATTGGTGCATTGCAGGGCAAATCCGCAAGAGGCACCTCTCTGCTGCGGA
TCTCCTTGAAGCGAAGCTTCTGCTTCTCGGCCTTCTTACGCTGCCCAGTC
TTTCTTTTCGGCATGTCGACTGAT
BS06208.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10009-PA | 948 | Noa36-RA | 1..948 | 964..17 | 4665 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:42:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Noa36-RA | 1138 | CG10009-RA | 68..1015 | 964..17 | 4695 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:42:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28598727..28599221 | 470..964 | 2430 | 99.4 | Plus |
| 3R | 32079331 | 3R | 28598182..28598640 | 17..475 | 2295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:42:20 has no hits.
BS06208.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:57 Download gff for
BS06208.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-PA | 1..948 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:38 Download gff for
BS06208.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10009-PA | 1..948 | 17..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:49 Download gff for
BS06208.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 68..1019 | 12..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:26:27 Download gff for
BS06208.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 68..1019 | 12..964 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:26:27 Download gff for
BS06208.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28598178..28598637 | 12..472 | 99 | <- | Plus |
| 3R | 28598730..28599221 | 473..964 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:49 Download gff for
BS06208.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24423900..24424359 | 12..472 | 99 | <- | Plus |
| arm_3R | 24424452..24424943 | 473..964 | 99 | | Plus |
BS06208.5prime Sequence
920 bp (881 high quality bases) assembled on 2005-12-03
> BS06208.5prime
GAAGTTATCAGTCGACATGCCGAAAAAGAAGACTGGGCAGCGTAAGAAGG
CCGAGAAGCAGAAGCTTCGCCTCAAGGAGATCCGCAGCAGAGAGGTGCCT
CTTGCGGATTTGCCCTGCAATGCACCAATGGAGTGCGACAAGTGCGAGAA
GAAGCAGAAGTCGAGAGCCTTCTGCTATTTCTGCCAGAGCATTCAGAGAT
TACCCATTTGCGCCCAGTGCGGGAAAATCAAGTGCATGCTAAAGACCGGC
GACTGCGTGGTCAAACATCCGGGCGTCTACACCACGGGCCTCGGAATGGT
GGGCGCCATCTGCGACTTCTGCGAGGCTTGGGTTTGCCACGGACGCAAGT
GTCTCCAAAACCACGCCTGCACGTGTCCGCTGCAGAATGCGACCTGCCTG
GAGTGCGAACGCGGTGTCTGGGAGCACGGTGGGCGCATCTTCAAGTGCTC
CTTCTGCAACGGATTCCTGTGCGAGGACGATCAGTTCGAGCACCAGGCCA
GCTGTCAGGTGCTGGAGTCGGAGAACTACAAGTGTCAATCGTGCAACAAG
CTGGGTCAATACTCCTGCCTGCGCTGCAAGACCTGTTACTGCGAGGATCA
CGTGCGTCGCAAGGGCTTCAAGTACGACAAGAACAAGCCAATTCCATGCC
CCAAGTGCAACTACGATACCTCGGTGACCAAGGACCTCAGCATGTCCACG
CGGTCGCACAAATTCGGGCGACAGCAACAAGGAGGCAACAGCGACGACGA
GGAGGGATACGGTGGATACTATGGAGCCGGTGGCAGTGGCTATTATGGTG
GCGCCGCCAGTGGGGGCTACTCCTACGGGGGTGATGACGATGAAGATGAG
TCCGATGGAGACTACGATGATGAAAGCGATGAAGACGATGATGATGATGA
GGGAGAGGACGAGACCACAG
BS06208.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10009-PA | 948 | Noa36-RA | 1..904 | 17..920 | 4495 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:34:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Noa36-RA | 1138 | CG10009-RA | 68..971 | 17..920 | 4505 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28598727..28599221 | 511..17 | 2475 | 100 | Minus |
| 3R | 32079331 | 3R | 28598226..28598640 | 920..506 | 2060 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 09:33:59 has no hits.
BS06208.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:58 Download gff for
BS06208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:39 Download gff for
BS06208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10009-PA | 1..904 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:14:32 Download gff for
BS06208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 68..971 | 17..920 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:19 Download gff for
BS06208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 68..971 | 17..920 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:19 Download gff for
BS06208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28598226..28598637 | 509..920 | 99 | <- | Minus |
| 3R | 28598730..28599221 | 17..508 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:14:32 Download gff for
BS06208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24423948..24424359 | 509..920 | 99 | <- | Minus |
| arm_3R | 24424452..24424943 | 17..508 | 100 | | Minus |
BS06208.complete Sequence
980 bp (980 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635394
> BS06208.complete
GAAGTTATCAGTCGACATGCCGAAAAAGAAGACTGGGCAGCGTAAGAAGG
CCGAGAAGCAGAAGCTTCGCCTCAAGGAGATCCGCAGCAGAGAGGTGCCT
CTTGCGGATTTGCCCTGCAATGCACCAATGGAGTGCGACAAGTGCGAGAA
GAAGCAGAAGTCGAGAGCCTTCTGCTATTTCTGCCAGAGCATTCAGAGAT
TACCCATTTGCGCCCAGTGCGGGAAAATCAAGTGCATGCTAAAGACCGGC
GACTGCGTGGTCAAACATCCGGGCGTCTACACCACGGGCCTCGGAATGGT
GGGCGCCATCTGCGACTTCTGCGAGGCTTGGGTTTGCCACGGACGCAAGT
GTCTCCAAAACCACGCCTGCACGTGTCCGCTGCAGAATGCGACCTGCCTG
GAGTGCGAACGCGGTGTCTGGGAGCACGGTGGGCGCATCTTCAAGTGCTC
CTTCTGCAACGGATTCCTGTGCGAGGACGATCAGTTCGAGCACCAGGCCA
GCTGTCAGGTGCTGGAGTCGGAGAACTACAAGTGTCAATCGTGCAACAAG
CTGGGTCAATACTCCTGCCTGCGCTGCAAGACCTGTTACTGCGAGGATCA
CGTGCGTCGCAAGGGCTTCAAGTACGACAAGAACAAGCCAATTCCATGCC
CCAAGTGCAACTACGATACCTCGGTGACCAAGGACCTCAGCATGTCCACG
CGGTCGCACAAATTCGGGCGACAGCAACAAGGAGGCAACAGCGACGACGA
GGAGGGATACGGTGGATACTATGGAGCCGGTGGCAGTGGCTATTATGGTG
GCGCCGCCAGTGGGGGCTACTCCTACGGGGGTGATGACGATGAAGATGAG
TCCGATGGAGACTACGATGATGAAAGCGATGAAGACGATGATGATGATGA
GGAAGAGGACGAGACCACAGAAAGTGAACCGGAGAAGGAAACCGACAAAA
AGGCCACCAAATAAAAGCTTTCTAGACCAT
BS06208.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:31:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Noa36-RA | 948 | CG10009-PA | 1..948 | 17..964 | 4740 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Noa36-RA | 1138 | CG10009-RA | 68..1015 | 17..964 | 4740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:31:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 28598727..28599221 | 511..17 | 2475 | 100 | Minus |
| 3R | 32079331 | 3R | 28598182..28598640 | 964..506 | 2295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:31:13 has no hits.
BS06208.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:21 Download gff for
BS06208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 1..948 | 17..964 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:58 Download gff for
BS06208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 59..1010 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:01:50 Download gff for
BS06208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 68..1013 | 17..962 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:21 Download gff for
BS06208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 59..1010 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:43:13 Download gff for
BS06208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Noa36-RA | 68..1013 | 17..962 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:43:13 Download gff for
BS06208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 28598184..28598637 | 509..962 | 100 | <- | Minus |
| 3R | 28598730..28599221 | 17..508 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:01:50 Download gff for
BS06208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24423906..24424359 | 509..962 | 100 | <- | Minus |
| arm_3R | 24424452..24424943 | 17..508 | 100 | | Minus |
BS06208.pep Sequence
Translation from 16 to 963
> BS06208.pep
MPKKKTGQRKKAEKQKLRLKEIRSREVPLADLPCNAPMECDKCEKKQKSR
AFCYFCQSIQRLPICAQCGKIKCMLKTGDCVVKHPGVYTTGLGMVGAICD
FCEAWVCHGRKCLQNHACTCPLQNATCLECERGVWEHGGRIFKCSFCNGF
LCEDDQFEHQASCQVLESENYKCQSCNKLGQYSCLRCKTCYCEDHVRRKG
FKYDKNKPIPCPKCNYDTSVTKDLSMSTRSHKFGRQQQGGNSDDEEGYGG
YYGAGGSGYYGGAASGGYSYGGDDDEDESDGDYDDESDEDDDDDEEEDET
TESEPEKETDKKATK*
BS06208.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Noa36-PA | 315 | CG10009-PA | 1..315 | 1..315 | 1788 | 100 | Plus |
