Clone Sequence Records
BS06209.5prime Sequence
582 bp (581 high quality bases) assembled on 2005-12-03
> BS06209.5prime
GAAGTTATCAGTCGACATGGCCGAGGCTAACAAGAGGAATATCCCCATCA
AGCTGGGCGACTTCAGCGTCATCGACACGGAGTTCAGCAACATCCGCGAG
CGCTTCGACTCCGAGATGCGCAAAATGGAGGAGGAGATGGCCAAGTTCCG
TCACGAGCTGATGAACCGCGAGGCGAACTTCTTCGAGTCCACCAGCTCAA
CGACAAACTCGGCGCTGCCATCCCGAATCCCAAAGCAACAGAACTACGTC
TCCGACATTAGCTCACCCTTGATCCAGGATGAGGGCGATAACAAAGTGCT
GAAGCTGCGTTTCGATGTCAGCCAGTATGCGCCCGAGGAAATTGTTGTGA
AAACCGTCGACCAGAAGCTATTGGTGCACGCCAAGCACGAGGAGAAGTCG
GACACAAAGAGCGTGTACAGGGAGTACAATCGGGAGTTCCTGCTGCCCAA
GGGCGTCAATCCCGAGTCCATCCGCTCGTCCCTCAGCAAGGACGGAGTCC
TGACCGTGGACGCCCCCCTGCCAGCACTCACCGCCGGCGAGACACTGATT
CCCATTGCGCACAAGTGAAAGCTTTCTAGACC
BS06209.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14207-PA | 552 | CG14207-RA | 1..552 | 17..568 | 2760 | 100 | Plus |
CG14207-PB | 579 | CG14207-RB | 202..579 | 191..568 | 1890 | 100 | Plus |
CG14207-PB | 579 | CG14207-RB | 1..182 | 17..198 | 910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:30:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14207-RD | 1380 | CG14207-RD | 306..858 | 17..569 | 2765 | 100 | Plus |
CG14207-RA | 1240 | CG14207-RA | 306..858 | 17..569 | 2765 | 100 | Plus |
CG14207-RC | 753 | CG14207-RC | 110..491 | 188..569 | 1910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:30:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19610695..19610891 | 373..569 | 985 | 100 | Plus |
X | 23542271 | X | 19605504..19605682 | 17..195 | 895 | 100 | Plus |
X | 23542271 | X | 19610525..19610625 | 275..375 | 505 | 100 | Plus |
X | 23542271 | X | 19610378..19610463 | 193..278 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:30:53 has no hits.
BS06209.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:00 Download gff for
BS06209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-PA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:42 Download gff for
BS06209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-PA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:39:46 Download gff for
BS06209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-RA | 296..861 | 9..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:47:25 Download gff for
BS06209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-RA | 296..861 | 9..572 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:47:25 Download gff for
BS06209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19605497..19605682 | 11..195 | 97 | -> | Plus |
X | 19610381..19610462 | 196..277 | 100 | -> | Plus |
X | 19610528..19610623 | 278..373 | 100 | -> | Plus |
X | 19610696..19610894 | 374..572 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:39:46 Download gff for
BS06209.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19499530..19499715 | 11..195 | 97 | -> | Plus |
arm_X | 19504414..19504495 | 196..277 | 100 | -> | Plus |
arm_X | 19504561..19504656 | 278..373 | 100 | -> | Plus |
arm_X | 19504729..19504927 | 374..572 | 99 | | Plus |
BS06209.3prime Sequence
582 bp (581 high quality bases) assembled on 2005-12-03
> BS06209.3prime
ATGGTCTAGAAAGCTTTCACTTGTGCGCAATGGGAATCAGTGTCTCGCCG
GCGGTGAGTGCTGGCAGGGGGGCGTCCACGGTCAGGACTCCGTCCTTGCT
GAGGGACGAGCGGATGGACTCGGGATTGACGCCCTTGGGCAGCAGGAACT
CCCGATTGTACTCCCTGTACACGCTCTTTGTGTCCGACTTCTCCTCGTGC
TTGGCGTGCACCAATAGCTTCTGGTCGACGGTTTTCACAACAATTTCCTC
GGGCGCATACTGGCTGACATCGAAACGCAGCTTCAGCACTTTGTTATCGC
CCTCATCCTGGATCAAGGGTGAGCTAATGTCGGAGACGTAGTTCTGTTGC
TTTGGGATTCGGGATGGCAGCGCCGAGTTTGTCGTTGAGCTGGTGGACTC
GAAGAAGTTCGCCTCGCGGTTCATCAGCTCGTGACGGAACTTGGCCATCT
CCTCCTCCATTTTGCGCATCTCGGAGTCGAAGCGCTCGCGGATGTTGCTG
AACTCCGTGTCGATGACGCTGAAGTCGCCCAGCTTGATGGGGATATTCCT
CTTGTTAGCCTCGGCCATGTCGACTGATAACT
BS06209.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14207-PA | 552 | CG14207-RA | 1..552 | 568..17 | 2760 | 100 | Minus |
CG14207-PB | 579 | CG14207-RB | 202..579 | 394..17 | 1890 | 100 | Minus |
CG14207-PB | 579 | CG14207-RB | 1..182 | 568..387 | 910 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:10:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14207-RD | 1380 | CG14207-RD | 306..858 | 568..16 | 2765 | 100 | Minus |
CG14207-RA | 1240 | CG14207-RA | 306..858 | 568..16 | 2765 | 100 | Minus |
CG14207-RC | 753 | CG14207-RC | 110..491 | 397..16 | 1910 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 01:10:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19610695..19610891 | 212..16 | 985 | 100 | Minus |
X | 23542271 | X | 19605504..19605682 | 568..390 | 895 | 100 | Minus |
X | 23542271 | X | 19610525..19610625 | 310..210 | 505 | 100 | Minus |
X | 23542271 | X | 19610378..19610463 | 392..307 | 430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 01:10:49 has no hits.
BS06209.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:59 Download gff for
BS06209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-PA | 1..552 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:40 Download gff for
BS06209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-PA | 1..552 | 17..568 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 15:11:00 Download gff for
BS06209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-RA | 296..861 | 13..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:29:40 Download gff for
BS06209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-RA | 296..861 | 13..576 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:29:40 Download gff for
BS06209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19605497..19605682 | 390..574 | 97 | -> | Minus |
X | 19610381..19610462 | 308..389 | 100 | -> | Minus |
X | 19610528..19610623 | 212..307 | 100 | -> | Minus |
X | 19610696..19610894 | 13..211 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 15:11:00 Download gff for
BS06209.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19499530..19499715 | 390..574 | 97 | -> | Minus |
arm_X | 19504414..19504495 | 308..389 | 100 | -> | Minus |
arm_X | 19504561..19504656 | 212..307 | 100 | -> | Minus |
arm_X | 19504729..19504927 | 13..211 | 99 | | Minus |
BS06209.complete Sequence
584 bp (584 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635395
> BS06209.complete
GAAGTTATCAGTCGACATGGCCGAGGCTAACAAGAGGAATATCCCCATCA
AGCTGGGCGACTTCAGCGTCATCGACACGGAGTTCAGCAACATCCGCGAG
CGCTTCGACTCCGAGATGCGCAAAATGGAGGAGGAGATGGCCAAGTTCCG
TCACGAGCTGATGAACCGCGAGGCGAACTTCTTCGAGTCCACCAGCTCAA
CGACAAACTCGGCGCTGCCATCCCGAATCCCAAAGCAACAGAACTACGTC
TCCGACATTAGCTCACCCTTGATCCAGGATGAGGGCGATAACAAAGTGCT
GAAGCTGCGTTTCGATGTCAGCCAGTATGCGCCCGAGGAAATTGTTGTGA
AAACCGTCGACCAGAAGCTATTGGTGCACGCCAAGCACGAGGAGAAGTCG
GACACAAAGAGCGTGTACAGGGAGTACAATCGGGAGTTCCTGCTGCCCAA
GGGCGTCAATCCCGAGTCCATCCGCTCGTCCCTCAGCAAGGACGGAGTCC
TGACCGTGGACGCCCCCCTGCCAGCACTCACCGCCGGCGAGACACTGATT
CCCATTGCGCACAAGTGAAAGCTTTCTAGACCAT
BS06209.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14207-RD | 552 | CG14207-PD | 1..552 | 17..568 | 2760 | 100 | Plus |
CG14207-RA | 552 | CG14207-PA | 1..552 | 17..568 | 2760 | 100 | Plus |
CG14207-RC | 465 | CG14207-PC | 85..465 | 188..568 | 1905 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14207-RD | 1380 | CG14207-RD | 306..858 | 17..569 | 2765 | 100 | Plus |
CG14207-RA | 1240 | CG14207-RA | 306..858 | 17..569 | 2765 | 100 | Plus |
CG14207-RC | 753 | CG14207-RC | 110..491 | 188..569 | 1910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:05:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 19610695..19610891 | 373..569 | 985 | 100 | Plus |
X | 23542271 | X | 19605504..19605682 | 17..195 | 895 | 100 | Plus |
X | 23542271 | X | 19610525..19610625 | 275..375 | 505 | 100 | Plus |
X | 23542271 | X | 19610378..19610463 | 193..278 | 430 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 17:05:26 has no hits.
BS06209.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:39 Download gff for
BS06209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-RA | 1..552 | 17..568 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:29 Download gff for
BS06209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-RA | 337..902 | 9..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:09 Download gff for
BS06209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-RA | 306..856 | 17..567 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:40 Download gff for
BS06209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-RA | 337..902 | 9..572 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:25 Download gff for
BS06209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14207-RA | 306..856 | 17..567 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:25 Download gff for
BS06209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 19605504..19605682 | 17..195 | 100 | -> | Plus |
X | 19610381..19610462 | 196..277 | 100 | -> | Plus |
X | 19610528..19610623 | 278..373 | 100 | -> | Plus |
X | 19610696..19610889 | 374..567 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:09 Download gff for
BS06209.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 19499537..19499715 | 17..195 | 100 | -> | Plus |
arm_X | 19504414..19504495 | 196..277 | 100 | -> | Plus |
arm_X | 19504561..19504656 | 278..373 | 100 | -> | Plus |
arm_X | 19504729..19504922 | 374..567 | 100 | | Plus |
BS06209.pep Sequence
Translation from 16 to 567
> BS06209.pep
MAEANKRNIPIKLGDFSVIDTEFSNIRERFDSEMRKMEEEMAKFRHELMN
REANFFESTSSTTNSALPSRIPKQQNYVSDISSPLIQDEGDNKVLKLRFD
VSQYAPEEIVVKTVDQKLLVHAKHEEKSDTKSVYREYNREFLLPKGVNPE
SIRSSLSKDGVLTVDAPLPALTAGETLIPIAHK*
BS06209.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14207-PD | 183 | CG14207-PD | 1..183 | 1..183 | 922 | 100 | Plus |
CG14207-PA | 183 | CG14207-PA | 1..183 | 1..183 | 922 | 100 | Plus |
CG14207-PB | 192 | CG14207-PB | 1..192 | 1..183 | 902 | 95.3 | Plus |
CG14207-PC | 154 | CG14207-PC | 29..154 | 58..183 | 631 | 100 | Plus |
l(2)efl-PC | 187 | CG4533-PC | 75..161 | 91..176 | 194 | 43.7 | Plus |