Clone BS06209 Report

Search the DGRC for BS06209

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:9
Vector:pDNR-Dual
Associated Gene/TranscriptCG14207-RA
Protein status:BS06209.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06209.5prime Sequence

582 bp (581 high quality bases) assembled on 2005-12-03

> BS06209.5prime
GAAGTTATCAGTCGACATGGCCGAGGCTAACAAGAGGAATATCCCCATCA
AGCTGGGCGACTTCAGCGTCATCGACACGGAGTTCAGCAACATCCGCGAG
CGCTTCGACTCCGAGATGCGCAAAATGGAGGAGGAGATGGCCAAGTTCCG
TCACGAGCTGATGAACCGCGAGGCGAACTTCTTCGAGTCCACCAGCTCAA
CGACAAACTCGGCGCTGCCATCCCGAATCCCAAAGCAACAGAACTACGTC
TCCGACATTAGCTCACCCTTGATCCAGGATGAGGGCGATAACAAAGTGCT
GAAGCTGCGTTTCGATGTCAGCCAGTATGCGCCCGAGGAAATTGTTGTGA
AAACCGTCGACCAGAAGCTATTGGTGCACGCCAAGCACGAGGAGAAGTCG
GACACAAAGAGCGTGTACAGGGAGTACAATCGGGAGTTCCTGCTGCCCAA
GGGCGTCAATCCCGAGTCCATCCGCTCGTCCCTCAGCAAGGACGGAGTCC
TGACCGTGGACGCCCCCCTGCCAGCACTCACCGCCGGCGAGACACTGATT
CCCATTGCGCACAAGTGAAAGCTTTCTAGACC

BS06209.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG14207-PA 552 CG14207-RA 1..552 17..568 2760 100 Plus
CG14207-PB 579 CG14207-RB 202..579 191..568 1890 100 Plus
CG14207-PB 579 CG14207-RB 1..182 17..198 910 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:30:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG14207-RD 1380 CG14207-RD 306..858 17..569 2765 100 Plus
CG14207-RA 1240 CG14207-RA 306..858 17..569 2765 100 Plus
CG14207-RC 753 CG14207-RC 110..491 188..569 1910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:30:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19610695..19610891 373..569 985 100 Plus
X 23542271 X 19605504..19605682 17..195 895 100 Plus
X 23542271 X 19610525..19610625 275..375 505 100 Plus
X 23542271 X 19610378..19610463 193..278 430 100 Plus
Blast to na_te.dros performed on 2015-02-02 11:30:53 has no hits.

BS06209.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:00 Download gff for BS06209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14207-PA 1..552 17..568 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:42 Download gff for BS06209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14207-PA 1..552 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:39:46 Download gff for BS06209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14207-RA 296..861 9..572 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:47:25 Download gff for BS06209.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14207-RA 296..861 9..572 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:47:25 Download gff for BS06209.5prime
Subject Subject Range Query Range Percent Splice Strand
X 19605497..19605682 11..195 97 -> Plus
X 19610381..19610462 196..277 100 -> Plus
X 19610528..19610623 278..373 100 -> Plus
X 19610696..19610894 374..572 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:39:46 Download gff for BS06209.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19499530..19499715 11..195 97 -> Plus
arm_X 19504414..19504495 196..277 100 -> Plus
arm_X 19504561..19504656 278..373 100 -> Plus
arm_X 19504729..19504927 374..572 99   Plus

BS06209.3prime Sequence

582 bp (581 high quality bases) assembled on 2005-12-03

> BS06209.3prime
ATGGTCTAGAAAGCTTTCACTTGTGCGCAATGGGAATCAGTGTCTCGCCG
GCGGTGAGTGCTGGCAGGGGGGCGTCCACGGTCAGGACTCCGTCCTTGCT
GAGGGACGAGCGGATGGACTCGGGATTGACGCCCTTGGGCAGCAGGAACT
CCCGATTGTACTCCCTGTACACGCTCTTTGTGTCCGACTTCTCCTCGTGC
TTGGCGTGCACCAATAGCTTCTGGTCGACGGTTTTCACAACAATTTCCTC
GGGCGCATACTGGCTGACATCGAAACGCAGCTTCAGCACTTTGTTATCGC
CCTCATCCTGGATCAAGGGTGAGCTAATGTCGGAGACGTAGTTCTGTTGC
TTTGGGATTCGGGATGGCAGCGCCGAGTTTGTCGTTGAGCTGGTGGACTC
GAAGAAGTTCGCCTCGCGGTTCATCAGCTCGTGACGGAACTTGGCCATCT
CCTCCTCCATTTTGCGCATCTCGGAGTCGAAGCGCTCGCGGATGTTGCTG
AACTCCGTGTCGATGACGCTGAAGTCGCCCAGCTTGATGGGGATATTCCT
CTTGTTAGCCTCGGCCATGTCGACTGATAACT

BS06209.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG14207-PA 552 CG14207-RA 1..552 568..17 2760 100 Minus
CG14207-PB 579 CG14207-RB 202..579 394..17 1890 100 Minus
CG14207-PB 579 CG14207-RB 1..182 568..387 910 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 01:10:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG14207-RD 1380 CG14207-RD 306..858 568..16 2765 100 Minus
CG14207-RA 1240 CG14207-RA 306..858 568..16 2765 100 Minus
CG14207-RC 753 CG14207-RC 110..491 397..16 1910 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 01:10:48
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19610695..19610891 212..16 985 100 Minus
X 23542271 X 19605504..19605682 568..390 895 100 Minus
X 23542271 X 19610525..19610625 310..210 505 100 Minus
X 23542271 X 19610378..19610463 392..307 430 100 Minus
Blast to na_te.dros performed on 2015-02-11 01:10:49 has no hits.

BS06209.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:33:59 Download gff for BS06209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14207-PA 1..552 17..568 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:40 Download gff for BS06209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14207-PA 1..552 17..568 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 15:11:00 Download gff for BS06209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14207-RA 296..861 13..576 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:29:40 Download gff for BS06209.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14207-RA 296..861 13..576 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 04:29:40 Download gff for BS06209.3prime
Subject Subject Range Query Range Percent Splice Strand
X 19605497..19605682 390..574 97 -> Minus
X 19610381..19610462 308..389 100 -> Minus
X 19610528..19610623 212..307 100 -> Minus
X 19610696..19610894 13..211 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 15:11:00 Download gff for BS06209.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 19499530..19499715 390..574 97 -> Minus
arm_X 19504414..19504495 308..389 100 -> Minus
arm_X 19504561..19504656 212..307 100 -> Minus
arm_X 19504729..19504927 13..211 99   Minus

BS06209.complete Sequence

584 bp (584 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635395

> BS06209.complete
GAAGTTATCAGTCGACATGGCCGAGGCTAACAAGAGGAATATCCCCATCA
AGCTGGGCGACTTCAGCGTCATCGACACGGAGTTCAGCAACATCCGCGAG
CGCTTCGACTCCGAGATGCGCAAAATGGAGGAGGAGATGGCCAAGTTCCG
TCACGAGCTGATGAACCGCGAGGCGAACTTCTTCGAGTCCACCAGCTCAA
CGACAAACTCGGCGCTGCCATCCCGAATCCCAAAGCAACAGAACTACGTC
TCCGACATTAGCTCACCCTTGATCCAGGATGAGGGCGATAACAAAGTGCT
GAAGCTGCGTTTCGATGTCAGCCAGTATGCGCCCGAGGAAATTGTTGTGA
AAACCGTCGACCAGAAGCTATTGGTGCACGCCAAGCACGAGGAGAAGTCG
GACACAAAGAGCGTGTACAGGGAGTACAATCGGGAGTTCCTGCTGCCCAA
GGGCGTCAATCCCGAGTCCATCCGCTCGTCCCTCAGCAAGGACGGAGTCC
TGACCGTGGACGCCCCCCTGCCAGCACTCACCGCCGGCGAGACACTGATT
CCCATTGCGCACAAGTGAAAGCTTTCTAGACCAT

BS06209.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 17:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14207-RD 552 CG14207-PD 1..552 17..568 2760 100 Plus
CG14207-RA 552 CG14207-PA 1..552 17..568 2760 100 Plus
CG14207-RC 465 CG14207-PC 85..465 188..568 1905 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:05:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14207-RD 1380 CG14207-RD 306..858 17..569 2765 100 Plus
CG14207-RA 1240 CG14207-RA 306..858 17..569 2765 100 Plus
CG14207-RC 753 CG14207-RC 110..491 188..569 1910 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 17:05:25
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 19610695..19610891 373..569 985 100 Plus
X 23542271 X 19605504..19605682 17..195 895 100 Plus
X 23542271 X 19610525..19610625 275..375 505 100 Plus
X 23542271 X 19610378..19610463 193..278 430 100 Plus
Blast to na_te.dros performed on 2014-11-27 17:05:26 has no hits.

BS06209.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:42:39 Download gff for BS06209.complete
Subject Subject Range Query Range Percent Splice Strand
CG14207-RA 1..552 17..568 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:29:29 Download gff for BS06209.complete
Subject Subject Range Query Range Percent Splice Strand
CG14207-RA 337..902 9..572 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:09 Download gff for BS06209.complete
Subject Subject Range Query Range Percent Splice Strand
CG14207-RA 306..856 17..567 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:42:40 Download gff for BS06209.complete
Subject Subject Range Query Range Percent Splice Strand
CG14207-RA 337..902 9..572 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:34:25 Download gff for BS06209.complete
Subject Subject Range Query Range Percent Splice Strand
CG14207-RA 306..856 17..567 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:34:25 Download gff for BS06209.complete
Subject Subject Range Query Range Percent Splice Strand
X 19605504..19605682 17..195 100 -> Plus
X 19610381..19610462 196..277 100 -> Plus
X 19610528..19610623 278..373 100 -> Plus
X 19610696..19610889 374..567 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:09 Download gff for BS06209.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 19499537..19499715 17..195 100 -> Plus
arm_X 19504414..19504495 196..277 100 -> Plus
arm_X 19504561..19504656 278..373 100 -> Plus
arm_X 19504729..19504922 374..567 100   Plus

BS06209.pep Sequence

Translation from 16 to 567

> BS06209.pep
MAEANKRNIPIKLGDFSVIDTEFSNIRERFDSEMRKMEEEMAKFRHELMN
REANFFESTSSTTNSALPSRIPKQQNYVSDISSPLIQDEGDNKVLKLRFD
VSQYAPEEIVVKTVDQKLLVHAKHEEKSDTKSVYREYNREFLLPKGVNPE
SIRSSLSKDGVLTVDAPLPALTAGETLIPIAHK*

BS06209.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG14207-PD 183 CG14207-PD 1..183 1..183 922 100 Plus
CG14207-PA 183 CG14207-PA 1..183 1..183 922 100 Plus
CG14207-PB 192 CG14207-PB 1..192 1..183 902 95.3 Plus
CG14207-PC 154 CG14207-PC 29..154 58..183 631 100 Plus
l(2)efl-PC 187 CG4533-PC 75..161 91..176 194 43.7 Plus