Clone BS06213 Report

Search the DGRC for BS06213

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG8441-RA
Protein status:BS06213.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06213.3prime Sequence

792 bp (791 high quality bases) assembled on 2005-12-03

> BS06213.3prime
ATGGTCTAGAAAGCTTCTAAGGCACAGGCTTGTCTTGTTCTTGATCCACA
TTTTGGGATTCCTTTGTAGCTTCGGTGCTATCTAATTCCACTGCATTTGT
GTCCTCTGCGCTTTTCGCTTCTGTATTTGAATTCACTGCCTCTTCATTCG
AAGTTTCTTGGGTGTTATTGTCGTCGGATTCCTTGGATGCCACCTGTTGT
CCTTCCTCAGGGCTACTTTCTGCCTTTTCTTCTGTGGGCTCTTCCTCGGA
ATCTGTGTTACTATCCTCTGAGGCTTCCTTAGCCAGTGGCTTCTTGTCCT
CTCTCGGCTTTTTCGCCCTCTGTTTTCTCTTCAACCGTTTGGCTCGTTTC
TTAGCAGTCTTTTCTTCGGCCGCGCGTCTGTTGTCGTCCAACTTCTGCTG
GTAAGCTTCATCTGCTGCTTCGCGGGCACTCTGGTTCTGGATGTTCTTCT
GGCGGGCGTACTCCTTGCGTCGCAAGTGGCGGTACACATGGAACTCGCCG
GAACCCGCTCCAGCACTGCTTCCCATCACATTCCGCACGAACGTGGGCAC
CGAGGACATGAAGTCCCGTTCGCGACGCTGCTCCGGTATGACCACGGGCT
TATCCGGATTCTTCATGAGCTTCTCCAGCTTCAGCCTCTGTAGATCTGTC
GCGGTTTTGATGAACGGCCGCAGAGGCTTGTCCTTCTCATCGGAATCGCT
TTCTCCAGATCCCGCATTCTTTTTCTTTTTCTTTGCCTTCTGTTCGGGCT
CTTTTACCAAATTCTTTATAAGCGACATGTCGACTGATAACT

BS06213.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG8441-PA 762 CG8441-RA 1..762 778..17 3810 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:41:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG8441-RB 938 CG8441-RB 133..896 780..17 3820 100 Minus
CG8441-RA 841 CG8441-RA 36..799 780..17 3820 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:41:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16185164..16185752 17..605 2945 100 Plus
2R 25286936 2R 16185811..16185987 604..780 885 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:41:54 has no hits.

BS06213.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:08 Download gff for BS06213.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8441-PA 1..762 17..778 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:52 Download gff for BS06213.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8441-PA 1..762 17..778 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:47 Download gff for BS06213.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8441-RA 29..807 8..786 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:47 Download gff for BS06213.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8441-RA 29..807 8..786 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:47 Download gff for BS06213.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 16185156..16185751 8..604 99 <- Plus
2R 16185812..16185990 605..786 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:47 Download gff for BS06213.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12072661..12073256 8..604 99 <- Plus
arm_2R 12073317..12073495 605..786 97   Plus

BS06213.5prime Sequence

792 bp (791 high quality bases) assembled on 2005-12-03

> BS06213.5prime
GAAGTTATCAGTCGACATGTCGCTTATAAAGAATTTGGTAAAAGAGCCCG
AACAGAAGGCAAAGAAAAAGAAAAAGAATGCGGGATCTGGAGAAAGCGAT
TCCGATGAGAAGGACAAGCCTCTGCGGCCGTTCATCAAAACCGCGACAGA
TCTACAGAGGCTGAAGCTGGAGAAGCTCATGAAGAATCCGGATAAGCCCG
TGGTCATACCGGAGCAGCGTCGCGAACGGGACTTCATGTCCTCGGTGCCC
ACGTTCGTGCGGAATGTGATGGGAAGCAGTGCTGGAGCGGGTTCCGGCGA
GTTCCATGTGTACCGCCACTTGCGACGCAAGGAGTACGCCCGCCAGAAGA
ACATCCAGAACCAGAGTGCCCGCGAAGCAGCAGATGAAGCTTACCAGCAG
AAGTTGGACGACAACAGACGCGCGGCCGAAGAAAAGACTGCTAAGAAACG
AGCCAAACGGTTGAAGAGAAAACAGAGGGCGAAAAAGCCGAGAGAGGACA
AGAAGCCACTGGCTAAGGAAGCCTCAGAGGATAGTAACACAGATTCCGAG
GAAGAGCCCACAGAAGAAAAGGCAGAAAGTAGCCCTGAGGAAGGACAACA
GGTGGCATCCAAGGAATCCGACGACAATAACACCCAAGAAACTTCGAATG
AAGAGGCAGTGAATTCAAATACAGAAGCGAAAAGCGCAGAGGACACAAAT
GCAGTGGAATTAGATAGCACCGAAGCTACAAAGGAATCCCAAAATGTGGA
TCAAGAACAAGACAAGCCTGTGCCTTAGAAGCTTTCTAGACC

BS06213.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG8441-PA 762 CG8441-RA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG8441-RB 938 CG8441-RB 133..896 15..778 3820 100 Plus
CG8441-RA 841 CG8441-RA 36..799 15..778 3820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:39:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16185164..16185752 778..190 2945 100 Minus
2R 25286936 2R 16185811..16185987 191..15 885 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:39:34 has no hits.

BS06213.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:09 Download gff for BS06213.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8441-PA 1..762 17..778 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:53 Download gff for BS06213.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8441-PA 1..762 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:24:17 Download gff for BS06213.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8441-RA 29..807 9..787 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:18 Download gff for BS06213.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8441-RA 29..807 9..787 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:18 Download gff for BS06213.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 16185156..16185751 191..787 99 <- Minus
2R 16185812..16185990 9..190 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:24:17 Download gff for BS06213.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12072661..12073256 191..787 99 <- Minus
arm_2R 12073317..12073495 9..190 97   Minus

BS06213.complete Sequence

794 bp (794 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635396

> BS06213.complete
GAAGTTATCAGTCGACATGTCGCTTATAAAGAATTTGGTAAAAGAGCCCG
AACAGAAGGCAAAGAAAAAGAAAAAGAATGCGGGATCTGGAGAAAGCGAT
TCCGATGAGAAGGACAAGCCTCTGCGGCCGTTCATCAAAACCGCGACAGA
TCTACAGAGGCTGAAGCTGGAGAAGCTCATGAAGAATCCGGATAAGCCCG
TGGTCATACCGGAGCAGCGTCGCGAACGGGACTTCATGTCCTCGGTGCCC
ACGTTCGTGCGGAATGTGATGGGAAGCAGTGCTGGAGCGGGTTCCGGCGA
GTTCCATGTGTACCGCCACTTGCGACGCAAGGAGTACGCCCGCCAGAAGA
ACATCCAGAACCAGAGTGCCCGCGAAGCAGCAGATGAAGCTTACCAGCAG
AAGTTGGACGACAACAGACGCGCGGCCGAAGAAAAGACTGCTAAGAAACG
AGCCAAACGGTTGAAGAGAAAACAGAGGGCGAAAAAGCCGAGAGAGGACA
AGAAGCCACTGGCTAAGGAAGCCTCAGAGGATAGTAACACAGATTCCGAG
GAAGAGCCCACAGAAGAAAAGGCAGAAAGTAGCCCTGAGGAAGGACAACA
GGTGGCATCCAAGGAATCCGACGACAATAACACCCAAGAAACTTCGAATG
AAGAGGCAGTGAATTCAAATACAGAAGCGAAAAGCGCAGAGGACACAAAT
GCAGTGGAATTAGATAGCACCGAAGCTACAAAGGAATCCCAAAATGTGGA
TCAAGAACAAGACAAGCCTGTGCCTTAGAAGCTTTCTAGACCAT

BS06213.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:32:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG8441-RB 762 CG8441-PB 1..762 17..778 3810 100 Plus
CG8441-RA 762 CG8441-PA 1..762 17..778 3810 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:32:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG8441-RB 938 CG8441-RB 133..896 15..778 3820 100 Plus
CG8441-RA 841 CG8441-RA 36..799 15..778 3820 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:32:18
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 16185164..16185752 778..190 2945 100 Minus
2R 25286936 2R 16185811..16185987 191..15 885 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:32:18 has no hits.

BS06213.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:22 Download gff for BS06213.complete
Subject Subject Range Query Range Percent Splice Strand
CG8441-RA 1..762 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:00 Download gff for BS06213.complete
Subject Subject Range Query Range Percent Splice Strand
CG8441-RA 8..786 9..787 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:28 Download gff for BS06213.complete
Subject Subject Range Query Range Percent Splice Strand
CG8441-RA 38..799 17..778 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:22 Download gff for BS06213.complete
Subject Subject Range Query Range Percent Splice Strand
CG8441-RA 8..786 9..787 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:21 Download gff for BS06213.complete
Subject Subject Range Query Range Percent Splice Strand
CG8441-RA 38..799 17..778 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:21 Download gff for BS06213.complete
Subject Subject Range Query Range Percent Splice Strand
2R 16185164..16185751 191..778 100 <- Minus
2R 16185812..16185985 17..190 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:28 Download gff for BS06213.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 12072669..12073256 191..778 100 <- Minus
arm_2R 12073317..12073490 17..190 100   Minus

BS06213.pep Sequence

Translation from 16 to 777

> BS06213.pep
MSLIKNLVKEPEQKAKKKKKNAGSGESDSDEKDKPLRPFIKTATDLQRLK
LEKLMKNPDKPVVIPEQRRERDFMSSVPTFVRNVMGSSAGAGSGEFHVYR
HLRRKEYARQKNIQNQSAREAADEAYQQKLDDNRRAAEEKTAKKRAKRLK
RKQRAKKPREDKKPLAKEASEDSNTDSEEEPTEEKAESSPEEGQQVASKE
SDDNNTQETSNEEAVNSNTEAKSAEDTNAVELDSTEATKESQNVDQEQDK
PVP*

BS06213.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG8441-PB 253 CG8441-PB 1..253 1..253 1273 100 Plus
CG8441-PA 253 CG8441-PA 1..253 1..253 1273 100 Plus