Clone Sequence Records
BS06213.3prime Sequence
792 bp (791 high quality bases) assembled on 2005-12-03
> BS06213.3prime
ATGGTCTAGAAAGCTTCTAAGGCACAGGCTTGTCTTGTTCTTGATCCACA
TTTTGGGATTCCTTTGTAGCTTCGGTGCTATCTAATTCCACTGCATTTGT
GTCCTCTGCGCTTTTCGCTTCTGTATTTGAATTCACTGCCTCTTCATTCG
AAGTTTCTTGGGTGTTATTGTCGTCGGATTCCTTGGATGCCACCTGTTGT
CCTTCCTCAGGGCTACTTTCTGCCTTTTCTTCTGTGGGCTCTTCCTCGGA
ATCTGTGTTACTATCCTCTGAGGCTTCCTTAGCCAGTGGCTTCTTGTCCT
CTCTCGGCTTTTTCGCCCTCTGTTTTCTCTTCAACCGTTTGGCTCGTTTC
TTAGCAGTCTTTTCTTCGGCCGCGCGTCTGTTGTCGTCCAACTTCTGCTG
GTAAGCTTCATCTGCTGCTTCGCGGGCACTCTGGTTCTGGATGTTCTTCT
GGCGGGCGTACTCCTTGCGTCGCAAGTGGCGGTACACATGGAACTCGCCG
GAACCCGCTCCAGCACTGCTTCCCATCACATTCCGCACGAACGTGGGCAC
CGAGGACATGAAGTCCCGTTCGCGACGCTGCTCCGGTATGACCACGGGCT
TATCCGGATTCTTCATGAGCTTCTCCAGCTTCAGCCTCTGTAGATCTGTC
GCGGTTTTGATGAACGGCCGCAGAGGCTTGTCCTTCTCATCGGAATCGCT
TTCTCCAGATCCCGCATTCTTTTTCTTTTTCTTTGCCTTCTGTTCGGGCT
CTTTTACCAAATTCTTTATAAGCGACATGTCGACTGATAACT
BS06213.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8441-PA | 762 | CG8441-RA | 1..762 | 778..17 | 3810 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:41:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8441-RB | 938 | CG8441-RB | 133..896 | 780..17 | 3820 | 100 | Minus |
CG8441-RA | 841 | CG8441-RA | 36..799 | 780..17 | 3820 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:41:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16185164..16185752 | 17..605 | 2945 | 100 | Plus |
2R | 25286936 | 2R | 16185811..16185987 | 604..780 | 885 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:41:54 has no hits.
BS06213.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:08 Download gff for
BS06213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8441-PA | 1..762 | 17..778 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:52 Download gff for
BS06213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8441-PA | 1..762 | 17..778 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:47 Download gff for
BS06213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8441-RA | 29..807 | 8..786 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:47 Download gff for
BS06213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8441-RA | 29..807 | 8..786 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:47 Download gff for
BS06213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16185156..16185751 | 8..604 | 99 | <- | Plus |
2R | 16185812..16185990 | 605..786 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:47 Download gff for
BS06213.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12072661..12073256 | 8..604 | 99 | <- | Plus |
arm_2R | 12073317..12073495 | 605..786 | 97 | | Plus |
BS06213.5prime Sequence
792 bp (791 high quality bases) assembled on 2005-12-03
> BS06213.5prime
GAAGTTATCAGTCGACATGTCGCTTATAAAGAATTTGGTAAAAGAGCCCG
AACAGAAGGCAAAGAAAAAGAAAAAGAATGCGGGATCTGGAGAAAGCGAT
TCCGATGAGAAGGACAAGCCTCTGCGGCCGTTCATCAAAACCGCGACAGA
TCTACAGAGGCTGAAGCTGGAGAAGCTCATGAAGAATCCGGATAAGCCCG
TGGTCATACCGGAGCAGCGTCGCGAACGGGACTTCATGTCCTCGGTGCCC
ACGTTCGTGCGGAATGTGATGGGAAGCAGTGCTGGAGCGGGTTCCGGCGA
GTTCCATGTGTACCGCCACTTGCGACGCAAGGAGTACGCCCGCCAGAAGA
ACATCCAGAACCAGAGTGCCCGCGAAGCAGCAGATGAAGCTTACCAGCAG
AAGTTGGACGACAACAGACGCGCGGCCGAAGAAAAGACTGCTAAGAAACG
AGCCAAACGGTTGAAGAGAAAACAGAGGGCGAAAAAGCCGAGAGAGGACA
AGAAGCCACTGGCTAAGGAAGCCTCAGAGGATAGTAACACAGATTCCGAG
GAAGAGCCCACAGAAGAAAAGGCAGAAAGTAGCCCTGAGGAAGGACAACA
GGTGGCATCCAAGGAATCCGACGACAATAACACCCAAGAAACTTCGAATG
AAGAGGCAGTGAATTCAAATACAGAAGCGAAAAGCGCAGAGGACACAAAT
GCAGTGGAATTAGATAGCACCGAAGCTACAAAGGAATCCCAAAATGTGGA
TCAAGAACAAGACAAGCCTGTGCCTTAGAAGCTTTCTAGACC
BS06213.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8441-PA | 762 | CG8441-RA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8441-RB | 938 | CG8441-RB | 133..896 | 15..778 | 3820 | 100 | Plus |
CG8441-RA | 841 | CG8441-RA | 36..799 | 15..778 | 3820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:39:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16185164..16185752 | 778..190 | 2945 | 100 | Minus |
2R | 25286936 | 2R | 16185811..16185987 | 191..15 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:39:34 has no hits.
BS06213.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:09 Download gff for
BS06213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8441-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:53 Download gff for
BS06213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8441-PA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:24:17 Download gff for
BS06213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8441-RA | 29..807 | 9..787 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:18 Download gff for
BS06213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8441-RA | 29..807 | 9..787 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:18 Download gff for
BS06213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16185156..16185751 | 191..787 | 99 | <- | Minus |
2R | 16185812..16185990 | 9..190 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:24:17 Download gff for
BS06213.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12072661..12073256 | 191..787 | 99 | <- | Minus |
arm_2R | 12073317..12073495 | 9..190 | 97 | | Minus |
BS06213.complete Sequence
794 bp (794 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635396
> BS06213.complete
GAAGTTATCAGTCGACATGTCGCTTATAAAGAATTTGGTAAAAGAGCCCG
AACAGAAGGCAAAGAAAAAGAAAAAGAATGCGGGATCTGGAGAAAGCGAT
TCCGATGAGAAGGACAAGCCTCTGCGGCCGTTCATCAAAACCGCGACAGA
TCTACAGAGGCTGAAGCTGGAGAAGCTCATGAAGAATCCGGATAAGCCCG
TGGTCATACCGGAGCAGCGTCGCGAACGGGACTTCATGTCCTCGGTGCCC
ACGTTCGTGCGGAATGTGATGGGAAGCAGTGCTGGAGCGGGTTCCGGCGA
GTTCCATGTGTACCGCCACTTGCGACGCAAGGAGTACGCCCGCCAGAAGA
ACATCCAGAACCAGAGTGCCCGCGAAGCAGCAGATGAAGCTTACCAGCAG
AAGTTGGACGACAACAGACGCGCGGCCGAAGAAAAGACTGCTAAGAAACG
AGCCAAACGGTTGAAGAGAAAACAGAGGGCGAAAAAGCCGAGAGAGGACA
AGAAGCCACTGGCTAAGGAAGCCTCAGAGGATAGTAACACAGATTCCGAG
GAAGAGCCCACAGAAGAAAAGGCAGAAAGTAGCCCTGAGGAAGGACAACA
GGTGGCATCCAAGGAATCCGACGACAATAACACCCAAGAAACTTCGAATG
AAGAGGCAGTGAATTCAAATACAGAAGCGAAAAGCGCAGAGGACACAAAT
GCAGTGGAATTAGATAGCACCGAAGCTACAAAGGAATCCCAAAATGTGGA
TCAAGAACAAGACAAGCCTGTGCCTTAGAAGCTTTCTAGACCAT
BS06213.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:32:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8441-RB | 762 | CG8441-PB | 1..762 | 17..778 | 3810 | 100 | Plus |
CG8441-RA | 762 | CG8441-PA | 1..762 | 17..778 | 3810 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:32:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8441-RB | 938 | CG8441-RB | 133..896 | 15..778 | 3820 | 100 | Plus |
CG8441-RA | 841 | CG8441-RA | 36..799 | 15..778 | 3820 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:32:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 16185164..16185752 | 778..190 | 2945 | 100 | Minus |
2R | 25286936 | 2R | 16185811..16185987 | 191..15 | 885 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:32:18 has no hits.
BS06213.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:22 Download gff for
BS06213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8441-RA | 1..762 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:00 Download gff for
BS06213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8441-RA | 8..786 | 9..787 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:11:28 Download gff for
BS06213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8441-RA | 38..799 | 17..778 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:22 Download gff for
BS06213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8441-RA | 8..786 | 9..787 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:21 Download gff for
BS06213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8441-RA | 38..799 | 17..778 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:21 Download gff for
BS06213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 16185164..16185751 | 191..778 | 100 | <- | Minus |
2R | 16185812..16185985 | 17..190 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:11:28 Download gff for
BS06213.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 12072669..12073256 | 191..778 | 100 | <- | Minus |
arm_2R | 12073317..12073490 | 17..190 | 100 | | Minus |
BS06213.pep Sequence
Translation from 16 to 777
> BS06213.pep
MSLIKNLVKEPEQKAKKKKKNAGSGESDSDEKDKPLRPFIKTATDLQRLK
LEKLMKNPDKPVVIPEQRRERDFMSSVPTFVRNVMGSSAGAGSGEFHVYR
HLRRKEYARQKNIQNQSAREAADEAYQQKLDDNRRAAEEKTAKKRAKRLK
RKQRAKKPREDKKPLAKEASEDSNTDSEEEPTEEKAESSPEEGQQVASKE
SDDNNTQETSNEEAVNSNTEAKSAEDTNAVELDSTEATKESQNVDQEQDK
PVP*
BS06213.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8441-PB | 253 | CG8441-PB | 1..253 | 1..253 | 1273 | 100 | Plus |
CG8441-PA | 253 | CG8441-PA | 1..253 | 1..253 | 1273 | 100 | Plus |