Clone BS06214 Report

Search the DGRC for BS06214

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG17904-RA
Protein status:BS06214.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06214.3prime Sequence

898 bp (857 high quality bases) assembled on 2005-12-03

> BS06214.3prime
ATGGTCTAGAAAGCTTTTAACTAAAGCTGGCCATAATCTTTGAGCAAATT
CCTTCCAGCGCCTCAGTGGTGACATTCTTAAACTCAGTTAAATCCTCGCC
AGAATCGCAGGCTTTGGATATCTGTTGATCCAGAGGCAGGGAGCCCAACA
GCGGGATTCCCATTTCGGCGCACATGGCAGCGGCTCCTCCGGTTTTGGCT
GGAAAGATTTCGGAGCTATTTCCACAATGGCCGCAACGGAAACTGCTCAT
ATTCTCGATCACGCCCACAATGGGGATATTTTGCTTTTTACAAAAGTTGA
TCTCCTTGCGCACGTCCAGCAGAGACACCTCCTGTGGAGTGGTCACCATC
ACGGCGCGCAGGGACTCCGGGTTGGCGTCGTCTTTCAGGTACGAAACCAC
AGACAGGTGCTCATCGGAAGTTCCAGGTGGTGTGTCCAGTAGCAGGAGAT
CCAGATTTCCCCAGTCCACCTCGCTCAGAAACTGCCTGATCATGCCATTC
TTCTTGGGTCCTCGCCAAATAATGGCATCGTCCACAGAGCCCAGAAGAAA
TCCGATGGACATCAGACACACGTTGTCTTCGATTCCCACAGGTGACCAGC
CGTACCCAGACTGGTGGACACTCTCCCCCAGGGCGCCCATCAAACGCGGT
TGCGATGGACCGCAAATGTCGATATCAAGCACGCCGAAGTTACTGTCCGG
ATTACTTCTGGCCAGATAGCGGGTTAGCAAGCTGGTTACCGTGCTCTTGC
CAACGCCGCCTTTCCCGGACAGGATCAGCAGCTTGTGTTTGACATCTTTC
ATGGATTCGACCACCAAAGCCTTGCCGGGATCTTCGAGTTTCTTGTTGGG
ATCGCTGCAGAGTCCTTGGTTGGGGCAGCCCGAACAGGCACTTCCCTT

BS06214.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG17904-PA 936 CG17904-RA 55..936 898..17 4410 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG17904-RA 1075 CG17904-RA 137..1018 898..17 4410 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:41:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16732686..16733567 898..17 4410 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:41:38 has no hits.

BS06214.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:10 Download gff for BS06214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17904-PA 55..936 17..898 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:55 Download gff for BS06214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17904-PA 55..936 17..898 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:44 Download gff for BS06214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17904-RA 137..1018 17..898 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:20 Download gff for BS06214.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17904-RA 137..1018 17..898 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:20 Download gff for BS06214.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 16732686..16733567 17..898 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:44 Download gff for BS06214.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16732686..16733567 17..898 100   Minus

BS06214.5prime Sequence

872 bp (744 high quality bases) assembled on 2005-12-03

> BS06214.5prime
GAAGTTATCAGTCGACATGCAGGCACCACCTCCGGAACACTGTCCTGGCG
TCGAGAGCGAGGAGGCGGGCAAGGGAAGTGCCTGTTCGGGCTGCCCCAAC
CAAGGACTCTGCAGCGATCCCAACAAGAAACTCGAAGATCCCGGCAAGGC
TTTGGTGGTCGAATCCATGAAAGATGTCAAACACAAGCTGCTGATCCTGT
CCGGGAAAGGCGGCGTTGGCAAGAGCACGGTAACCAGCTTGCTAACCCGC
TATCTGGCCAGAAGTAATCCGGACAGTAACTTCGGCGTGCTTGATATCGA
CATTTGCGGTCCATCGCAACCGCGTTTGATGGGCGCCCTGGGGGAGAGTG
TCCACCAGTCTGGGTACGGCTGGTCACCTGTGGGAATCGAAGACAACGTG
TGTCTGATGTCCATCGGATTTCTTCTGGGCTCTGTGGACGATGCCATTAT
TTGGCGAGGACCCAAGAAGAATGGCATGATCAGGCAGTTTCTGAGCGAGG
TGGACTGGGGAAATCTGGATCTCCTGCTACTGGACACACCACCTGGAACT
TCCGATGAGCACCTGTCTGTGGTTTCGTACCTGAAAGACGACGCCAACCC
GGAGTCCCTGCGCGCCGTGATGGTGACCACTCCACAGGAGGTGTCTCTGC
TGGACGTGCGCAAGGAGATCAACTTTTGTAAAAAGCAAAATATCCCCATT
GTGGGCGTGATCGAGAATATGAGCAGTTTCCGTTGCGGCCATTGTGGAAA
TAGCTCCGAAATCTTTCCAGCCAAAACCGGAGGAGCCGCTGCCATGTGCG
CCGAAATGGGAATCCCGCTGTTGGGCTCCCTGCCTCTGGATCAACAGATA
TCCAAAGCCTGCGATTCTGGCG

BS06214.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG17904-PA 936 CG17904-RA 1..856 17..872 4280 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG17904-RA 1075 CG17904-RA 82..938 16..872 4285 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16732631..16733487 16..872 4285 100 Plus
Blast to na_te.dros performed on 2015-02-09 22:58:30 has no hits.

BS06214.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:11 Download gff for BS06214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17904-PA 1..856 17..872 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:57 Download gff for BS06214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17904-PA 1..856 17..872 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:29:26 Download gff for BS06214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17904-RA 77..938 10..872 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:50:44 Download gff for BS06214.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17904-RA 77..938 10..872 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:50:44 Download gff for BS06214.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 16732626..16733487 10..872 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:29:26 Download gff for BS06214.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16732626..16733487 10..872 99   Plus

BS06214.complete Sequence

968 bp (968 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635397

> BS06214.complete
GAAGTTATCAGTCGACATGCAGGCACCACCTCCGGAACACTGTCCTGGCG
TCGAGAGCGAGGAGGCGGGCAAGGGAAGTGCCTGTTCGGGCTGCCCCAAC
CAAGGACTCTGCAGCGATCCCAACAAGAAACTCGAAGATCCCGGCAAGGC
TTTGGTGGTCGAATCCATGAAAGATGTCAAACACAAGCTGCTGATCCTGT
CCGGGAAAGGCGGCGTTGGCAAGAGCACGGTAACCAGCTTGCTAACCCGC
TATCTGGCCAGAAGTAATCCGGACAGTAACTTCGGCGTGCTTGATATCGA
CATTTGCGGTCCATCGCAACCGCGTTTGATGGGCGCCCTGGGGGAGAGTG
TCCACCAGTCTGGGTACGGCTGGTCACCTGTGGGAATCGAAGACAACGTG
TGTCTGATGTCCATCGGATTTCTTCTGGGCTCTGTGGACGATGCCATTAT
TTGGCGAGGACCCAAGAAGAATGGCATGATCAGGCAGTTTCTGAGCGAGG
TGGACTGGGGAAATCTGGATCTCCTGCTACTGGACACACCACCTGGAACT
TCCGATGAGCACCTGTCTGTGGTTTCGTACCTGAAAGACGACGCCAACCC
GGAGTCCCTGCGCGCCGTGATGGTGACCACTCCACAGGAGGTGTCTCTGC
TGGACGTGCGCAAGGAGATCAACTTTTGTAAAAAGCAAAATATCCCCATT
GTGGGCGTGATCGAGAATATGAGCAGTTTCCGTTGCGGCCATTGTGGAAA
TAGCTCCGAAATCTTTCCAGCCAAAACCGGAGGAGCCGCTGCCATGTGCG
CCGAAATGGGAATCCCGCTGTTGGGCTCCCTGCCTCTGGATCAACAGATA
TCCAAAGCCTGCGATTCTGGCGAGGATTTAACTGAGTTTAAGAATGTCAC
CACTGAGGCGCTGGAAGGAATTTGCTCAAAGATTATGGCCAGCTTTAGTT
AAAAGCTTTCTAGACCAT

BS06214.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:38:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG17904-RA 936 CG17904-PA 1..936 17..952 4680 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:38:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG17904-RA 1075 CG17904-RA 82..1018 16..952 4685 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:38:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 16732631..16733567 16..952 4685 100 Plus
Blast to na_te.dros performed on 2014-11-26 21:38:26 has no hits.

BS06214.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:23 Download gff for BS06214.complete
Subject Subject Range Query Range Percent Splice Strand
CG17904-RA 1..936 17..952 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:01 Download gff for BS06214.complete
Subject Subject Range Query Range Percent Splice Strand
CG17904-RA 66..1007 10..952 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:15 Download gff for BS06214.complete
Subject Subject Range Query Range Percent Splice Strand
CG17904-RA 83..1016 17..950 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:24 Download gff for BS06214.complete
Subject Subject Range Query Range Percent Splice Strand
CG17904-RA 66..1007 10..952 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:28 Download gff for BS06214.complete
Subject Subject Range Query Range Percent Splice Strand
CG17904-RA 83..1016 17..950 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:28 Download gff for BS06214.complete
Subject Subject Range Query Range Percent Splice Strand
2L 16732632..16733565 17..950 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:15 Download gff for BS06214.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 16732632..16733565 17..950 100   Plus

BS06214.pep Sequence

Translation from 16 to 951

> BS06214.pep
MQAPPPEHCPGVESEEAGKGSACSGCPNQGLCSDPNKKLEDPGKALVVES
MKDVKHKLLILSGKGGVGKSTVTSLLTRYLARSNPDSNFGVLDIDICGPS
QPRLMGALGESVHQSGYGWSPVGIEDNVCLMSIGFLLGSVDDAIIWRGPK
KNGMIRQFLSEVDWGNLDLLLLDTPPGTSDEHLSVVSYLKDDANPESLRA
VMVTTPQEVSLLDVRKEINFCKKQNIPIVGVIENMSSFRCGHCGNSSEIF
PAKTGGAAAMCAEMGIPLLGSLPLDQQISKACDSGEDLTEFKNVTTEALE
GICSKIMASFS*

BS06214.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG17904-PA 311 CG17904-PA 1..311 1..311 1635 100 Plus
CG4858-PA 260 CG4858-PA 5..254 54..306 556 47.9 Plus
CG3262-PE 293 CG3262-PE 38..252 54..285 305 36.6 Plus
CG3262-PD 293 CG3262-PD 38..252 54..285 305 36.6 Plus
CG3262-PF 207 CG3262-PF 22..166 127..285 229 35.8 Plus