Clone Sequence Records
BS06214.3prime Sequence
898 bp (857 high quality bases) assembled on 2005-12-03
> BS06214.3prime
ATGGTCTAGAAAGCTTTTAACTAAAGCTGGCCATAATCTTTGAGCAAATT
CCTTCCAGCGCCTCAGTGGTGACATTCTTAAACTCAGTTAAATCCTCGCC
AGAATCGCAGGCTTTGGATATCTGTTGATCCAGAGGCAGGGAGCCCAACA
GCGGGATTCCCATTTCGGCGCACATGGCAGCGGCTCCTCCGGTTTTGGCT
GGAAAGATTTCGGAGCTATTTCCACAATGGCCGCAACGGAAACTGCTCAT
ATTCTCGATCACGCCCACAATGGGGATATTTTGCTTTTTACAAAAGTTGA
TCTCCTTGCGCACGTCCAGCAGAGACACCTCCTGTGGAGTGGTCACCATC
ACGGCGCGCAGGGACTCCGGGTTGGCGTCGTCTTTCAGGTACGAAACCAC
AGACAGGTGCTCATCGGAAGTTCCAGGTGGTGTGTCCAGTAGCAGGAGAT
CCAGATTTCCCCAGTCCACCTCGCTCAGAAACTGCCTGATCATGCCATTC
TTCTTGGGTCCTCGCCAAATAATGGCATCGTCCACAGAGCCCAGAAGAAA
TCCGATGGACATCAGACACACGTTGTCTTCGATTCCCACAGGTGACCAGC
CGTACCCAGACTGGTGGACACTCTCCCCCAGGGCGCCCATCAAACGCGGT
TGCGATGGACCGCAAATGTCGATATCAAGCACGCCGAAGTTACTGTCCGG
ATTACTTCTGGCCAGATAGCGGGTTAGCAAGCTGGTTACCGTGCTCTTGC
CAACGCCGCCTTTCCCGGACAGGATCAGCAGCTTGTGTTTGACATCTTTC
ATGGATTCGACCACCAAAGCCTTGCCGGGATCTTCGAGTTTCTTGTTGGG
ATCGCTGCAGAGTCCTTGGTTGGGGCAGCCCGAACAGGCACTTCCCTT
BS06214.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17904-PA | 936 | CG17904-RA | 55..936 | 898..17 | 4410 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:41:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17904-RA | 1075 | CG17904-RA | 137..1018 | 898..17 | 4410 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:41:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16732686..16733567 | 898..17 | 4410 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:41:38 has no hits.
BS06214.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:10 Download gff for
BS06214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-PA | 55..936 | 17..898 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:55 Download gff for
BS06214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-PA | 55..936 | 17..898 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:44 Download gff for
BS06214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-RA | 137..1018 | 17..898 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:25:20 Download gff for
BS06214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-RA | 137..1018 | 17..898 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:25:20 Download gff for
BS06214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16732686..16733567 | 17..898 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:44 Download gff for
BS06214.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16732686..16733567 | 17..898 | 100 | | Minus |
BS06214.5prime Sequence
872 bp (744 high quality bases) assembled on 2005-12-03
> BS06214.5prime
GAAGTTATCAGTCGACATGCAGGCACCACCTCCGGAACACTGTCCTGGCG
TCGAGAGCGAGGAGGCGGGCAAGGGAAGTGCCTGTTCGGGCTGCCCCAAC
CAAGGACTCTGCAGCGATCCCAACAAGAAACTCGAAGATCCCGGCAAGGC
TTTGGTGGTCGAATCCATGAAAGATGTCAAACACAAGCTGCTGATCCTGT
CCGGGAAAGGCGGCGTTGGCAAGAGCACGGTAACCAGCTTGCTAACCCGC
TATCTGGCCAGAAGTAATCCGGACAGTAACTTCGGCGTGCTTGATATCGA
CATTTGCGGTCCATCGCAACCGCGTTTGATGGGCGCCCTGGGGGAGAGTG
TCCACCAGTCTGGGTACGGCTGGTCACCTGTGGGAATCGAAGACAACGTG
TGTCTGATGTCCATCGGATTTCTTCTGGGCTCTGTGGACGATGCCATTAT
TTGGCGAGGACCCAAGAAGAATGGCATGATCAGGCAGTTTCTGAGCGAGG
TGGACTGGGGAAATCTGGATCTCCTGCTACTGGACACACCACCTGGAACT
TCCGATGAGCACCTGTCTGTGGTTTCGTACCTGAAAGACGACGCCAACCC
GGAGTCCCTGCGCGCCGTGATGGTGACCACTCCACAGGAGGTGTCTCTGC
TGGACGTGCGCAAGGAGATCAACTTTTGTAAAAAGCAAAATATCCCCATT
GTGGGCGTGATCGAGAATATGAGCAGTTTCCGTTGCGGCCATTGTGGAAA
TAGCTCCGAAATCTTTCCAGCCAAAACCGGAGGAGCCGCTGCCATGTGCG
CCGAAATGGGAATCCCGCTGTTGGGCTCCCTGCCTCTGGATCAACAGATA
TCCAAAGCCTGCGATTCTGGCG
BS06214.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17904-PA | 936 | CG17904-RA | 1..856 | 17..872 | 4280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 22:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17904-RA | 1075 | CG17904-RA | 82..938 | 16..872 | 4285 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 22:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16732631..16733487 | 16..872 | 4285 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-09 22:58:30 has no hits.
BS06214.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:11 Download gff for
BS06214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:57 Download gff for
BS06214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-PA | 1..856 | 17..872 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:29:26 Download gff for
BS06214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-RA | 77..938 | 10..872 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:50:44 Download gff for
BS06214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-RA | 77..938 | 10..872 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:50:44 Download gff for
BS06214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16732626..16733487 | 10..872 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:29:26 Download gff for
BS06214.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16732626..16733487 | 10..872 | 99 | | Plus |
BS06214.complete Sequence
968 bp (968 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635397
> BS06214.complete
GAAGTTATCAGTCGACATGCAGGCACCACCTCCGGAACACTGTCCTGGCG
TCGAGAGCGAGGAGGCGGGCAAGGGAAGTGCCTGTTCGGGCTGCCCCAAC
CAAGGACTCTGCAGCGATCCCAACAAGAAACTCGAAGATCCCGGCAAGGC
TTTGGTGGTCGAATCCATGAAAGATGTCAAACACAAGCTGCTGATCCTGT
CCGGGAAAGGCGGCGTTGGCAAGAGCACGGTAACCAGCTTGCTAACCCGC
TATCTGGCCAGAAGTAATCCGGACAGTAACTTCGGCGTGCTTGATATCGA
CATTTGCGGTCCATCGCAACCGCGTTTGATGGGCGCCCTGGGGGAGAGTG
TCCACCAGTCTGGGTACGGCTGGTCACCTGTGGGAATCGAAGACAACGTG
TGTCTGATGTCCATCGGATTTCTTCTGGGCTCTGTGGACGATGCCATTAT
TTGGCGAGGACCCAAGAAGAATGGCATGATCAGGCAGTTTCTGAGCGAGG
TGGACTGGGGAAATCTGGATCTCCTGCTACTGGACACACCACCTGGAACT
TCCGATGAGCACCTGTCTGTGGTTTCGTACCTGAAAGACGACGCCAACCC
GGAGTCCCTGCGCGCCGTGATGGTGACCACTCCACAGGAGGTGTCTCTGC
TGGACGTGCGCAAGGAGATCAACTTTTGTAAAAAGCAAAATATCCCCATT
GTGGGCGTGATCGAGAATATGAGCAGTTTCCGTTGCGGCCATTGTGGAAA
TAGCTCCGAAATCTTTCCAGCCAAAACCGGAGGAGCCGCTGCCATGTGCG
CCGAAATGGGAATCCCGCTGTTGGGCTCCCTGCCTCTGGATCAACAGATA
TCCAAAGCCTGCGATTCTGGCGAGGATTTAACTGAGTTTAAGAATGTCAC
CACTGAGGCGCTGGAAGGAATTTGCTCAAAGATTATGGCCAGCTTTAGTT
AAAAGCTTTCTAGACCAT
BS06214.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:38:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17904-RA | 936 | CG17904-PA | 1..936 | 17..952 | 4680 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17904-RA | 1075 | CG17904-RA | 82..1018 | 16..952 | 4685 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:38:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 16732631..16733567 | 16..952 | 4685 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:38:26 has no hits.
BS06214.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:23 Download gff for
BS06214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-RA | 1..936 | 17..952 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:01 Download gff for
BS06214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-RA | 66..1007 | 10..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:32:15 Download gff for
BS06214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-RA | 83..1016 | 17..950 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:24 Download gff for
BS06214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-RA | 66..1007 | 10..952 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:38:28 Download gff for
BS06214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17904-RA | 83..1016 | 17..950 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:38:28 Download gff for
BS06214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 16732632..16733565 | 17..950 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:32:15 Download gff for
BS06214.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 16732632..16733565 | 17..950 | 100 | | Plus |
BS06214.pep Sequence
Translation from 16 to 951
> BS06214.pep
MQAPPPEHCPGVESEEAGKGSACSGCPNQGLCSDPNKKLEDPGKALVVES
MKDVKHKLLILSGKGGVGKSTVTSLLTRYLARSNPDSNFGVLDIDICGPS
QPRLMGALGESVHQSGYGWSPVGIEDNVCLMSIGFLLGSVDDAIIWRGPK
KNGMIRQFLSEVDWGNLDLLLLDTPPGTSDEHLSVVSYLKDDANPESLRA
VMVTTPQEVSLLDVRKEINFCKKQNIPIVGVIENMSSFRCGHCGNSSEIF
PAKTGGAAAMCAEMGIPLLGSLPLDQQISKACDSGEDLTEFKNVTTEALE
GICSKIMASFS*
BS06214.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17904-PA | 311 | CG17904-PA | 1..311 | 1..311 | 1635 | 100 | Plus |
CG4858-PA | 260 | CG4858-PA | 5..254 | 54..306 | 556 | 47.9 | Plus |
CG3262-PE | 293 | CG3262-PE | 38..252 | 54..285 | 305 | 36.6 | Plus |
CG3262-PD | 293 | CG3262-PD | 38..252 | 54..285 | 305 | 36.6 | Plus |
CG3262-PF | 207 | CG3262-PF | 22..166 | 127..285 | 229 | 35.8 | Plus |