Clone BS06215 Report

Search the DGRC for BS06215

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:15
Vector:pDNR-Dual
Associated Gene/Transcriptasf1-RA
Protein status:BS06215.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06215.3prime Sequence

687 bp (686 high quality bases) assembled on 2005-12-03

> BS06215.3prime
ATGGTCTAGAAAGCTTTCAACATTCCATGGCCAGTGAGTTGGAGTTCTCG
TTCAAGGCCTTGATTCCGTTCTCCATTGGCATGGCCAAACTATTATCATC
TTCGGGATGGATAACTGCTGAAGCCGCCTCCGATGTGGACGGTCCATCGG
TGGCCATCTCATCTTGATGGCCGTTCTCCACGCCATTTCCATTCCCGTTG
ATGTGCCCGTAGTCCCAATTGATTTTGAATCGGGTGACGCGCGGCTTGCT
GGCCAGGATGTTTCGCGTCAGCTTCTCGAAAAGAGGCTTTGTTGGCGGGT
TCTCGCGCATCTCCGGGTCAGCGTAGTCGTTATTCACATAGTAGCCCACG
CGGACGAACTCCTGGCCGCGGTAGGAGCAGGTAAGCAGAACAATGGTAAC
GCCCACCGCATCCGGTTCCGGGATCTTGCTGACGTCTGGCGGATCCGCCT
GGAAGACAAAGATGTGTCGCCCCTCAGGCACAGGTCCCACGTATATGGTG
TCCAGCACCTGGTCGTGCTCCTCGGACTCCGCCGAGCCTACATAGATCAT
CTTCCACTCTAGATCCTCTTTTAGCTCCTCAATGCACTCGAACGTGAGTT
CGAACTGAAAGGGGTTGAAGAAGCTGCTCGGGTTGTCCAGCACCACCACG
TTGGTGATGTGCACCTTGGCCATGTCGACTGATAACT

BS06215.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG9383-PA 657 asf1-RA 1..657 673..17 3285 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
asf1-RB 1129 CG9383-RB 285..947 674..12 3300 99.8 Minus
asf1-RA 1505 CG9383-RA 285..947 674..12 3300 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:06:52
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19619178..19619840 674..12 3300 99.8 Minus
Blast to na_te.dros performed on 2015-01-30 15:06:55 has no hits.

BS06215.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:12 Download gff for BS06215.3prime
Subject Subject Range Query Range Percent Splice Strand
asf1-PA 1..657 17..673 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:58 Download gff for BS06215.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9383-PA 1..657 17..673 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:09:52 Download gff for BS06215.3prime
Subject Subject Range Query Range Percent Splice Strand
asf1-RA 276..947 12..687 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:45 Download gff for BS06215.3prime
Subject Subject Range Query Range Percent Splice Strand
asf1-RA 276..947 12..687 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:45 Download gff for BS06215.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19619169..19619840 12..687 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:09:52 Download gff for BS06215.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19612269..19612940 12..687 99   Minus

BS06215.5prime Sequence

687 bp (686 high quality bases) assembled on 2005-12-03

> BS06215.5prime
GAAGTTATCAGTCGACATGGCCAAGGTGCACATCACCAACGTGGTGGTGC
TGGACAACCCGAGCAGCTTCTTCAACCCCTTTCAGTTCGAACTCACGTTC
GAGTGCATTGAGGAGCTAAAAGAGGATCTAGAGTGGAAGATGATCTATGT
AGGCTCGGCGGAGTCCGAGGAGCACGACCAGGTGCTGGACACCATATACG
TGGGACCTGTGCCTGAGGGGCGACACATCTTTGTCTTCCAGGCGGATCCG
CCAGACGTCAGCAAGATCCCGGAACCGGATGCGGTGGGCGTTACCATTGT
TCTGCTTACCTGCTCCTACCGCGGCCAGGAGTTCGTCCGCGTGGGCTACT
ATGTGAATAACGACTACGCTGACCCGGAGATGCGCGAGAACCCGCCAACA
AAGCCTCTTTTCGAGAAGCTGACGCGAAACATCCTGGCCAGCAAGCCGCG
CGTCACCCGATTCAAAATCAATTGGGACTACGGGCACATCAACGGGAATG
GAAATGGCGTGGAGAACGGCCATCAAGATGAGATGGCCACCGATGGACCG
TCCACATCGGAGGCGGCTTCAGCAGTTATCCATCCCGAAGATGATAATAG
TTTGGCCATGCCAATGGAGAACGGAATCAAGGCCTTGAACGAGAACTCCA
ACTCACTGGCCATGGAATGTTGAAAGCTTTCTAGACC

BS06215.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG9383-PA 657 asf1-RA 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:49
Subject Length Description Subject Range Query Range Score Percent Strand
asf1-RB 1129 CG9383-RB 285..947 16..678 3300 99.8 Plus
asf1-RA 1505 CG9383-RA 285..947 16..678 3300 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:28:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19619178..19619840 16..678 3300 99.8 Plus
Blast to na_te.dros performed on 2015-02-12 06:28:45 has no hits.

BS06215.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:13 Download gff for BS06215.5prime
Subject Subject Range Query Range Percent Splice Strand
asf1-PA 1..657 17..673 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:59 Download gff for BS06215.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9383-PA 1..657 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:19:21 Download gff for BS06215.5prime
Subject Subject Range Query Range Percent Splice Strand
asf1-RA 276..947 3..678 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:16:08 Download gff for BS06215.5prime
Subject Subject Range Query Range Percent Splice Strand
asf1-RA 276..947 3..678 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:16:08 Download gff for BS06215.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19619169..19619840 3..678 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:19:21 Download gff for BS06215.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19612269..19612940 3..678 99   Plus

BS06215.complete Sequence

689 bp (689 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635398

> BS06215.complete
GAAGTTATCAGTCGACATGGCCAAGGTGCACATCACCAACGTGGTGGTGC
TGGACAACCCGAGCAGCTTCTTCAACCCCTTTCAGTTCGAACTCACGTTC
GAGTGCATTGAGGAGCTAAAAGAGGATCTAGAGTGGAAGATGATCTATGT
AGGCTCGGCGGAGTCCGAGGAGCACGACCAGGTGCTGGACACCATATACG
TGGGACCTGTGCCTGAGGGGCGACACATCTTTGTCTTCCAGGCGGATCCG
CCAGACGTCAGCAAGATCCCGGAACCGGATGCGGTGGGCGTTACCATTGT
TCTGCTTACCTGCTCCTACCGCGGCCAGGAGTTCGTCCGCGTGGGCTACT
ATGTGAATAACGACTACGCTGACCCGGAGATGCGCGAGAACCCGCCAACA
AAGCCTCTTTTCGAGAAGCTGACGCGAAACATCCTGGCCAGCAAGCCGCG
CGTCACCCGATTCAAAATCAATTGGGACTACGGGCACATCAACGGGAATG
GAAATGGCGTGGAGAACGGCCATCAAGATGAGATGGCCACCGATGGACCG
TCCACATCGGAGGCGGCTTCAGCAGTTATCCATCCCGAAGATGATAATAG
TTTGGCCATGCCAATGGAGAACGGAATCAAGGCCTTGAACGAGAACTCCA
ACTCACTGGCCATGGAATGTTGAAAGCTTTCTAGACCAT

BS06215.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
asf1-RB 657 CG9383-PB 1..657 17..673 3285 100 Plus
asf1-RA 657 CG9383-PA 1..657 17..673 3285 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:34
Subject Length Description Subject Range Query Range Score Percent Strand
asf1-RB 1129 CG9383-RB 285..947 16..678 3300 99.8 Plus
asf1-RA 1505 CG9383-RA 285..947 16..678 3300 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:32
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19619178..19619840 16..678 3300 99.8 Plus
Blast to na_te.dros performed on 2014-11-28 01:10:33 has no hits.

BS06215.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:25 Download gff for BS06215.complete
Subject Subject Range Query Range Percent Splice Strand
asf1-RA 1..657 17..673 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:03 Download gff for BS06215.complete
Subject Subject Range Query Range Percent Splice Strand
asf1-RA 278..949 3..678 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:10 Download gff for BS06215.complete
Subject Subject Range Query Range Percent Splice Strand
asf1-RA 286..941 17..672 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:25 Download gff for BS06215.complete
Subject Subject Range Query Range Percent Splice Strand
asf1-RA 278..949 3..678 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:31 Download gff for BS06215.complete
Subject Subject Range Query Range Percent Splice Strand
asf1-RA 286..941 17..672 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:31 Download gff for BS06215.complete
Subject Subject Range Query Range Percent Splice Strand
3L 19619179..19619834 17..672 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:10 Download gff for BS06215.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19612279..19612934 17..672 100   Plus

BS06215.pep Sequence

Translation from 16 to 672

> BS06215.pep
MAKVHITNVVVLDNPSSFFNPFQFELTFECIEELKEDLEWKMIYVGSAES
EEHDQVLDTIYVGPVPEGRHIFVFQADPPDVSKIPEPDAVGVTIVLLTCS
YRGQEFVRVGYYVNNDYADPEMRENPPTKPLFEKLTRNILASKPRVTRFK
INWDYGHINGNGNGVENGHQDEMATDGPSTSEAASAVIHPEDDNSLAMPM
ENGIKALNENSNSLAMEC*

BS06215.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:05
Subject Length Description Subject Range Query Range Score Percent Strand
asf1-PB 218 CG9383-PB 1..218 1..218 1162 100 Plus
asf1-PA 218 CG9383-PA 1..218 1..218 1162 100 Plus