Clone Sequence Records
BS06215.3prime Sequence
687 bp (686 high quality bases) assembled on 2005-12-03
> BS06215.3prime
ATGGTCTAGAAAGCTTTCAACATTCCATGGCCAGTGAGTTGGAGTTCTCG
TTCAAGGCCTTGATTCCGTTCTCCATTGGCATGGCCAAACTATTATCATC
TTCGGGATGGATAACTGCTGAAGCCGCCTCCGATGTGGACGGTCCATCGG
TGGCCATCTCATCTTGATGGCCGTTCTCCACGCCATTTCCATTCCCGTTG
ATGTGCCCGTAGTCCCAATTGATTTTGAATCGGGTGACGCGCGGCTTGCT
GGCCAGGATGTTTCGCGTCAGCTTCTCGAAAAGAGGCTTTGTTGGCGGGT
TCTCGCGCATCTCCGGGTCAGCGTAGTCGTTATTCACATAGTAGCCCACG
CGGACGAACTCCTGGCCGCGGTAGGAGCAGGTAAGCAGAACAATGGTAAC
GCCCACCGCATCCGGTTCCGGGATCTTGCTGACGTCTGGCGGATCCGCCT
GGAAGACAAAGATGTGTCGCCCCTCAGGCACAGGTCCCACGTATATGGTG
TCCAGCACCTGGTCGTGCTCCTCGGACTCCGCCGAGCCTACATAGATCAT
CTTCCACTCTAGATCCTCTTTTAGCTCCTCAATGCACTCGAACGTGAGTT
CGAACTGAAAGGGGTTGAAGAAGCTGCTCGGGTTGTCCAGCACCACCACG
TTGGTGATGTGCACCTTGGCCATGTCGACTGATAACT
BS06215.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9383-PA | 657 | asf1-RA | 1..657 | 673..17 | 3285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
asf1-RB | 1129 | CG9383-RB | 285..947 | 674..12 | 3300 | 99.8 | Minus |
asf1-RA | 1505 | CG9383-RA | 285..947 | 674..12 | 3300 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:06:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19619178..19619840 | 674..12 | 3300 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-01-30 15:06:55 has no hits.
BS06215.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:12 Download gff for
BS06215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asf1-PA | 1..657 | 17..673 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:58 Download gff for
BS06215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9383-PA | 1..657 | 17..673 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:09:52 Download gff for
BS06215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asf1-RA | 276..947 | 12..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:45 Download gff for
BS06215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asf1-RA | 276..947 | 12..687 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:45 Download gff for
BS06215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19619169..19619840 | 12..687 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:09:52 Download gff for
BS06215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19612269..19612940 | 12..687 | 99 | | Minus |
BS06215.5prime Sequence
687 bp (686 high quality bases) assembled on 2005-12-03
> BS06215.5prime
GAAGTTATCAGTCGACATGGCCAAGGTGCACATCACCAACGTGGTGGTGC
TGGACAACCCGAGCAGCTTCTTCAACCCCTTTCAGTTCGAACTCACGTTC
GAGTGCATTGAGGAGCTAAAAGAGGATCTAGAGTGGAAGATGATCTATGT
AGGCTCGGCGGAGTCCGAGGAGCACGACCAGGTGCTGGACACCATATACG
TGGGACCTGTGCCTGAGGGGCGACACATCTTTGTCTTCCAGGCGGATCCG
CCAGACGTCAGCAAGATCCCGGAACCGGATGCGGTGGGCGTTACCATTGT
TCTGCTTACCTGCTCCTACCGCGGCCAGGAGTTCGTCCGCGTGGGCTACT
ATGTGAATAACGACTACGCTGACCCGGAGATGCGCGAGAACCCGCCAACA
AAGCCTCTTTTCGAGAAGCTGACGCGAAACATCCTGGCCAGCAAGCCGCG
CGTCACCCGATTCAAAATCAATTGGGACTACGGGCACATCAACGGGAATG
GAAATGGCGTGGAGAACGGCCATCAAGATGAGATGGCCACCGATGGACCG
TCCACATCGGAGGCGGCTTCAGCAGTTATCCATCCCGAAGATGATAATAG
TTTGGCCATGCCAATGGAGAACGGAATCAAGGCCTTGAACGAGAACTCCA
ACTCACTGGCCATGGAATGTTGAAAGCTTTCTAGACC
BS06215.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9383-PA | 657 | asf1-RA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:28:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
asf1-RB | 1129 | CG9383-RB | 285..947 | 16..678 | 3300 | 99.8 | Plus |
asf1-RA | 1505 | CG9383-RA | 285..947 | 16..678 | 3300 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:28:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19619178..19619840 | 16..678 | 3300 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:28:45 has no hits.
BS06215.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:13 Download gff for
BS06215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asf1-PA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:10:59 Download gff for
BS06215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9383-PA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:19:21 Download gff for
BS06215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asf1-RA | 276..947 | 3..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:16:08 Download gff for
BS06215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asf1-RA | 276..947 | 3..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:16:08 Download gff for
BS06215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19619169..19619840 | 3..678 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:19:21 Download gff for
BS06215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19612269..19612940 | 3..678 | 99 | | Plus |
BS06215.complete Sequence
689 bp (689 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635398
> BS06215.complete
GAAGTTATCAGTCGACATGGCCAAGGTGCACATCACCAACGTGGTGGTGC
TGGACAACCCGAGCAGCTTCTTCAACCCCTTTCAGTTCGAACTCACGTTC
GAGTGCATTGAGGAGCTAAAAGAGGATCTAGAGTGGAAGATGATCTATGT
AGGCTCGGCGGAGTCCGAGGAGCACGACCAGGTGCTGGACACCATATACG
TGGGACCTGTGCCTGAGGGGCGACACATCTTTGTCTTCCAGGCGGATCCG
CCAGACGTCAGCAAGATCCCGGAACCGGATGCGGTGGGCGTTACCATTGT
TCTGCTTACCTGCTCCTACCGCGGCCAGGAGTTCGTCCGCGTGGGCTACT
ATGTGAATAACGACTACGCTGACCCGGAGATGCGCGAGAACCCGCCAACA
AAGCCTCTTTTCGAGAAGCTGACGCGAAACATCCTGGCCAGCAAGCCGCG
CGTCACCCGATTCAAAATCAATTGGGACTACGGGCACATCAACGGGAATG
GAAATGGCGTGGAGAACGGCCATCAAGATGAGATGGCCACCGATGGACCG
TCCACATCGGAGGCGGCTTCAGCAGTTATCCATCCCGAAGATGATAATAG
TTTGGCCATGCCAATGGAGAACGGAATCAAGGCCTTGAACGAGAACTCCA
ACTCACTGGCCATGGAATGTTGAAAGCTTTCTAGACCAT
BS06215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:10:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
asf1-RB | 657 | CG9383-PB | 1..657 | 17..673 | 3285 | 100 | Plus |
asf1-RA | 657 | CG9383-PA | 1..657 | 17..673 | 3285 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:10:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
asf1-RB | 1129 | CG9383-RB | 285..947 | 16..678 | 3300 | 99.8 | Plus |
asf1-RA | 1505 | CG9383-RA | 285..947 | 16..678 | 3300 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:10:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19619178..19619840 | 16..678 | 3300 | 99.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:10:33 has no hits.
BS06215.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:25 Download gff for
BS06215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asf1-RA | 1..657 | 17..673 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:03 Download gff for
BS06215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asf1-RA | 278..949 | 3..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:41:10 Download gff for
BS06215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asf1-RA | 286..941 | 17..672 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:25 Download gff for
BS06215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asf1-RA | 278..949 | 3..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:46:31 Download gff for
BS06215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
asf1-RA | 286..941 | 17..672 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:46:31 Download gff for
BS06215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19619179..19619834 | 17..672 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:41:10 Download gff for
BS06215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19612279..19612934 | 17..672 | 100 | | Plus |
BS06215.pep Sequence
Translation from 16 to 672
> BS06215.pep
MAKVHITNVVVLDNPSSFFNPFQFELTFECIEELKEDLEWKMIYVGSAES
EEHDQVLDTIYVGPVPEGRHIFVFQADPPDVSKIPEPDAVGVTIVLLTCS
YRGQEFVRVGYYVNNDYADPEMRENPPTKPLFEKLTRNILASKPRVTRFK
INWDYGHINGNGNGVENGHQDEMATDGPSTSEAASAVIHPEDDNSLAMPM
ENGIKALNENSNSLAMEC*
BS06215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
asf1-PB | 218 | CG9383-PB | 1..218 | 1..218 | 1162 | 100 | Plus |
asf1-PA | 218 | CG9383-PA | 1..218 | 1..218 | 1162 | 100 | Plus |