Clone Sequence Records
BS06216.3prime Sequence
890 bp (846 high quality bases) assembled on 2005-12-03
> BS06216.3prime
ATGGTCTAGAAAGCTTTCAATTTCTGGCCGTGTTCTCCTTGCCGCGCTCC
CGTTTCTGCAGCTGCAGCTCCCTTTCGGCCATTCCCGCCTTCACCCAATA
ATGGGTCATCACATCCACCAAGGTGATGCGGCCCTTGCTTTCCTTGCGAA
GCAGCCCGCCAATCAATTCCTTGCAGCCCTTGGACAAATGCGATGGGTAG
GAGATCTCCATGCGCCGGATCTTGCTGTAGGTGCTCTCCGTGCTGTTCGA
CTCGAAGGGCGGACAGCCGACGACGAACTCGTAGCACAGAATGCCCAGGC
ACCACTGGTCCACCGAGTCGTCGTAGGAGTTCCCATCCACCATCTCCGGC
GGCAGATAGTCCAGGGTGCCGCACAGAGTCCTGCGCTTGTTGTTCGGCGT
GTGCGCCGACCAACCAAAGTCGGCCAGCTTAAGGTCGTCCGTGCTGGTTA
GCAGAATGTTCTCCGGCTTCAGATCCCGATGGATCACGTTGTTCAGGTGA
CAGTAGTTGAGGGCATTCGCCACTTGGTAGGTGTACTTCGCAGACCGCGG
TTCATCGAATCGATGATTGGGTGCGCCACGCAGGTGCTTGAACAGCTCGC
CCTCGGACGCAATTTCCAGGGCCAGATAGATGCGGCTCTCGTCGTGGAAC
CAAGTGAGCAGGCGCAGGATGTGCGGGTGCTTCAGTCGCGACTGGATCTC
GATCTCGCGTAGAACCTGACGCTGCACGCAGCCCTTGCGCAGCTCCTCTT
TGAACATCACCTTCATGGCCACCAGATAGTGCGAGTGGCGCTCCCGCGCC
AAGTAGACACGTCCAAATTTGCCGCGTCCCAAGTGGGCGCCCATCTCAAA
GTCCCGGGGACTCCAATCGTATGGCTGTCCGTATGCGTCG
BS06216.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6620-PA | 990 | ial-RA | 117..990 | 890..17 | 4370 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurB-RA | 1183 | CG6620-RA | 234..1107 | 890..17 | 4370 | 100 | Minus |
aurA-RA | 1577 | CG3068-RA | 1009..1139 | 469..339 | 180 | 76.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10857071..10857788 | 155..872 | 3590 | 100 | Plus |
2L | 23513712 | 2L | 10856873..10857011 | 17..155 | 695 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 18:26:00 has no hits.
BS06216.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:14 Download gff for
BS06216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ial-PA | 117..990 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:00 Download gff for
BS06216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6620-PA | 117..990 | 17..890 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:36:57 Download gff for
BS06216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ial-RA | 234..1118 | 6..890 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:52:17 Download gff for
BS06216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aurB-RA | 234..1118 | 6..890 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:52:17 Download gff for
BS06216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10856862..10857010 | 6..154 | 97 | <- | Plus |
2L | 10857071..10857788 | 155..872 | 100 | <- | Plus |
2L | 10857844..10857861 | 873..890 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:36:57 Download gff for
BS06216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10856862..10857010 | 6..154 | 97 | <- | Plus |
arm_2L | 10857071..10857788 | 155..872 | 100 | <- | Plus |
arm_2L | 10857844..10857861 | 873..890 | 100 | | Plus |
BS06216.5prime Sequence
922 bp (842 high quality bases) assembled on 2005-12-03
> BS06216.5prime
GAAGTTATCAGTCGACATGACGCTTTCCCGCGCGAAGCACGCCAACCGCA
ACCACCTGCCGCACCTGCTGGCCAAGGTGCCCGAGGAGCACCAGGAGCCG
ATCAAGAATATGTGCCTCAAGATGATGTCCCACGACGCATACGGACAGCC
ATACGATTGGAGTCCCCGGGACTTTGAGATGGGCGCCCACTTGGGACGCG
GCAAATTTGGACGTGTCTACTTGGCGCGGGAGCGCCACTCGCACTATCTG
GTGGCCATGAAGGTGATGTTCAAAGAGGAGCTGCGCAAGGGCTGCGTGCA
GCGTCAGGTTCTACGCGAGATCGAGATCCAGTCGCGACTGAAGCACCCGC
ACATCCTGCGCCTGCTCACTTGGTTCCACGACGAGAGCCGCATCTATCTG
GCCCTGGAAATTGCGTCCGAGGGCGAGCTGTTCAAGCACCTGCGTGGCGC
ACCCAATCATCGATTCGATGAACCGCGGTCTGCGAAGTACACCTACCAAG
TGGCGAATGCCCTCAACTACTGTCACCTGAACAACGTGATCCATCGGGAT
CTGAAGCCGGAGAACATTCTGCTAACCAGCACGGACGACCTTAAGCTGGC
CGACTTTGGTTGGTCGGCGCACACGCCGAACAACAAGCGCAGGACTCTGT
GCGGCACCCTGGACTATCTGCCGCCGGAGATGGTGGATGGGAACTCCTAC
GACGACTCGGTGGACCAGTGGTGCCTGGGCATTCTGTGCTACGAGTTCGT
CGTCGGCTGTCCGCCCTTCGAGTCGAACAGCACGGAGAGCACCTACAGCA
AGATCCGGCGCATGGAGATCTCCTACCCATCGCATTTGTCCAAGGGCTGC
AAGGAATTGATTGGCGGGCTGCTTTCGCAGGAAAGCAAGGGGCGCATCAC
CTTGGTGGATGTGATGACCCAT
BS06216.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6620-PA | 990 | ial-RA | 1..858 | 17..874 | 4290 | 100 | Plus |
CG6620-PA | 990 | ial-RA | 863..906 | 879..922 | 195 | 97.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurB-RA | 1183 | CG6620-RA | 117..1023 | 16..922 | 4475 | 99.7 | Plus |
aurA-RA | 1577 | CG3068-RA | 1009..1139 | 554..684 | 180 | 76.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10857071..10857788 | 868..151 | 3590 | 100 | Minus |
2L | 23513712 | 2L | 10857839..10857978 | 155..16 | 685 | 99.3 | Minus |
2L | 23513712 | 2L | 10856957..10857000 | 922..879 | 205 | 97.7 | Minus |
Blast to na_te.dros performed on 2015-02-12 20:00:22 has no hits.
BS06216.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:15 Download gff for
BS06216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ial-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:02 Download gff for
BS06216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6620-PA | 1..906 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:33:26 Download gff for
BS06216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ial-RA | 107..1023 | 2..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:28:22 Download gff for
BS06216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aurB-RA | 107..1023 | 2..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:28:22 Download gff for
BS06216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10856957..10857010 | 869..922 | 94 | <- | Minus |
2L | 10857071..10857788 | 151..868 | 100 | <- | Minus |
2L | 10857844..10857988 | 2..150 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:33:26 Download gff for
BS06216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10856957..10857010 | 869..922 | 94 | <- | Minus |
arm_2L | 10857071..10857788 | 151..868 | 100 | <- | Minus |
arm_2L | 10857844..10857988 | 2..150 | 96 | | Minus |
BS06216.complete Sequence
1022 bp (1022 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635399
> BS06216.complete
GAAGTTATCAGTCGACATGACGCTTTCCCGCGCGAAGCACGCCAACCGCA
ACCACCTGCCGCACCTGCTGGCCAAGGTGCCCGAGGAGCACCAGGAGCCG
ATCAAGAATATGTGCCTCAAGATGATGTCCCACGACGCATACGGACAGCC
ATACGATTGGAGTCCCCGGGACTTTGAGATGGGCGCCCACTTGGGACGCG
GCAAATTTGGACGTGTCTACTTGGCGCGGGAGCGCCACTCGCACTATCTG
GTGGCCATGAAGGTGATGTTCAAAGAGGAGCTGCGCAAGGGCTGCGTGCA
GCGTCAGGTTCTACGCGAGATCGAGATCCAGTCGCGACTGAAGCACCCGC
ACATCCTGCGCCTGCTCACTTGGTTCCACGACGAGAGCCGCATCTATCTG
GCCCTGGAAATTGCGTCCGAGGGCGAGCTGTTCAAGCACCTGCGTGGCGC
ACCCAATCATCGATTCGATGAACCGCGGTCTGCGAAGTACACCTACCAAG
TGGCGAATGCCCTCAACTACTGTCACCTGAACAACGTGATCCATCGGGAT
CTGAAGCCGGAGAACATTCTGCTAACCAGCACGGACGACCTTAAGCTGGC
CGACTTTGGTTGGTCGGCGCACACGCCGAACAACAAGCGCAGGACTCTGT
GCGGCACCCTGGACTATCTGCCGCCGGAGATGGTGGATGGGAACTCCTAC
GACGACTCGGTGGACCAGTGGTGCCTGGGCATTCTGTGCTACGAGTTCGT
CGTCGGCTGTCCGCCCTTCGAGTCGAACAGCACGGAGAGCACCTACAGCA
AGATCCGGCGCATGGAGATCTCCTACCCATCGCATTTGTCCAAGGGCTGC
AAGGAATTGATTGGCGGGCTGCTTCGCAAGGAAAGCAAGGGCCGCATCAC
CTTGGTGGATGTGATGACCCATTATTGGGTGAAGGCGGGAATGGCCGAAA
GGGAGCTGCAGCTGCAGAAACGGGAGCGCGGCAAGGAGAACACGGCCAGA
AATTGAAAGCTTTCTAGACCAT
BS06216.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurB-RA | 990 | CG6620-PA | 1..990 | 17..1006 | 4950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:05:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurB-RA | 1183 | CG6620-RA | 117..1107 | 16..1006 | 4955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10857071..10857788 | 868..151 | 3590 | 100 | Minus |
2L | 23513712 | 2L | 10856873..10857011 | 1006..868 | 695 | 100 | Minus |
2L | 23513712 | 2L | 10857839..10857978 | 155..16 | 685 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:05:19 has no hits.
BS06216.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:26 Download gff for
BS06216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ial-RA | 1..990 | 17..1006 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:04 Download gff for
BS06216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ial-RA | 95..1106 | 2..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:51:41 Download gff for
BS06216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ial-RA | 118..1106 | 17..1005 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:26 Download gff for
BS06216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ial-RA | 95..1106 | 2..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:38 Download gff for
BS06216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
aurB-RA | 118..1106 | 17..1005 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:38 Download gff for
BS06216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10856874..10857010 | 869..1005 | 100 | <- | Minus |
2L | 10857071..10857788 | 151..868 | 100 | <- | Minus |
2L | 10857844..10857977 | 17..150 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:51:41 Download gff for
BS06216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10856874..10857010 | 869..1005 | 100 | <- | Minus |
arm_2L | 10857071..10857788 | 151..868 | 100 | <- | Minus |
arm_2L | 10857844..10857977 | 17..150 | 100 | | Minus |
BS06216.pep Sequence
Translation from 16 to 1005
> BS06216.pep
MTLSRAKHANRNHLPHLLAKVPEEHQEPIKNMCLKMMSHDAYGQPYDWSP
RDFEMGAHLGRGKFGRVYLARERHSHYLVAMKVMFKEELRKGCVQRQVLR
EIEIQSRLKHPHILRLLTWFHDESRIYLALEIASEGELFKHLRGAPNHRF
DEPRSAKYTYQVANALNYCHLNNVIHRDLKPENILLTSTDDLKLADFGWS
AHTPNNKRRTLCGTLDYLPPEMVDGNSYDDSVDQWCLGILCYEFVVGCPP
FESNSTESTYSKIRRMEISYPSHLSKGCKELIGGLLRKESKGRITLVDVM
THYWVKAGMAERELQLQKRERGKENTARN*
BS06216.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
aurB-PA | 329 | CG6620-PA | 1..329 | 1..329 | 1774 | 100 | Plus |
aurA-PA | 411 | CG3068-PA | 149..408 | 48..307 | 718 | 51.9 | Plus |
SAK-PA | 769 | CG7186-PA | 1..264 | 36..302 | 470 | 38.2 | Plus |
Pka-C1-PD | 353 | CG4379-PD | 45..277 | 52..287 | 412 | 37.7 | Plus |
Pka-C1-PC | 353 | CG4379-PC | 45..277 | 52..287 | 412 | 37.7 | Plus |