Clone BS06216 Report

Search the DGRC for BS06216

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptaurB-RA
Protein status:BS06216.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06216.3prime Sequence

890 bp (846 high quality bases) assembled on 2005-12-03

> BS06216.3prime
ATGGTCTAGAAAGCTTTCAATTTCTGGCCGTGTTCTCCTTGCCGCGCTCC
CGTTTCTGCAGCTGCAGCTCCCTTTCGGCCATTCCCGCCTTCACCCAATA
ATGGGTCATCACATCCACCAAGGTGATGCGGCCCTTGCTTTCCTTGCGAA
GCAGCCCGCCAATCAATTCCTTGCAGCCCTTGGACAAATGCGATGGGTAG
GAGATCTCCATGCGCCGGATCTTGCTGTAGGTGCTCTCCGTGCTGTTCGA
CTCGAAGGGCGGACAGCCGACGACGAACTCGTAGCACAGAATGCCCAGGC
ACCACTGGTCCACCGAGTCGTCGTAGGAGTTCCCATCCACCATCTCCGGC
GGCAGATAGTCCAGGGTGCCGCACAGAGTCCTGCGCTTGTTGTTCGGCGT
GTGCGCCGACCAACCAAAGTCGGCCAGCTTAAGGTCGTCCGTGCTGGTTA
GCAGAATGTTCTCCGGCTTCAGATCCCGATGGATCACGTTGTTCAGGTGA
CAGTAGTTGAGGGCATTCGCCACTTGGTAGGTGTACTTCGCAGACCGCGG
TTCATCGAATCGATGATTGGGTGCGCCACGCAGGTGCTTGAACAGCTCGC
CCTCGGACGCAATTTCCAGGGCCAGATAGATGCGGCTCTCGTCGTGGAAC
CAAGTGAGCAGGCGCAGGATGTGCGGGTGCTTCAGTCGCGACTGGATCTC
GATCTCGCGTAGAACCTGACGCTGCACGCAGCCCTTGCGCAGCTCCTCTT
TGAACATCACCTTCATGGCCACCAGATAGTGCGAGTGGCGCTCCCGCGCC
AAGTAGACACGTCCAAATTTGCCGCGTCCCAAGTGGGCGCCCATCTCAAA
GTCCCGGGGACTCCAATCGTATGGCTGTCCGTATGCGTCG

BS06216.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG6620-PA 990 ial-RA 117..990 890..17 4370 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:26:01
Subject Length Description Subject Range Query Range Score Percent Strand
aurB-RA 1183 CG6620-RA 234..1107 890..17 4370 100 Minus
aurA-RA 1577 CG3068-RA 1009..1139 469..339 180 76.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 18:25:59
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10857071..10857788 155..872 3590 100 Plus
2L 23513712 2L 10856873..10857011 17..155 695 100 Plus
Blast to na_te.dros performed on 2015-02-10 18:26:00 has no hits.

BS06216.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:14 Download gff for BS06216.3prime
Subject Subject Range Query Range Percent Splice Strand
ial-PA 117..990 17..890 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:00 Download gff for BS06216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6620-PA 117..990 17..890 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 08:36:57 Download gff for BS06216.3prime
Subject Subject Range Query Range Percent Splice Strand
ial-RA 234..1118 6..890 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:52:17 Download gff for BS06216.3prime
Subject Subject Range Query Range Percent Splice Strand
aurB-RA 234..1118 6..890 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 19:52:17 Download gff for BS06216.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10856862..10857010 6..154 97 <- Plus
2L 10857071..10857788 155..872 100 <- Plus
2L 10857844..10857861 873..890 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 08:36:57 Download gff for BS06216.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10856862..10857010 6..154 97 <- Plus
arm_2L 10857071..10857788 155..872 100 <- Plus
arm_2L 10857844..10857861 873..890 100   Plus

BS06216.5prime Sequence

922 bp (842 high quality bases) assembled on 2005-12-03

> BS06216.5prime
GAAGTTATCAGTCGACATGACGCTTTCCCGCGCGAAGCACGCCAACCGCA
ACCACCTGCCGCACCTGCTGGCCAAGGTGCCCGAGGAGCACCAGGAGCCG
ATCAAGAATATGTGCCTCAAGATGATGTCCCACGACGCATACGGACAGCC
ATACGATTGGAGTCCCCGGGACTTTGAGATGGGCGCCCACTTGGGACGCG
GCAAATTTGGACGTGTCTACTTGGCGCGGGAGCGCCACTCGCACTATCTG
GTGGCCATGAAGGTGATGTTCAAAGAGGAGCTGCGCAAGGGCTGCGTGCA
GCGTCAGGTTCTACGCGAGATCGAGATCCAGTCGCGACTGAAGCACCCGC
ACATCCTGCGCCTGCTCACTTGGTTCCACGACGAGAGCCGCATCTATCTG
GCCCTGGAAATTGCGTCCGAGGGCGAGCTGTTCAAGCACCTGCGTGGCGC
ACCCAATCATCGATTCGATGAACCGCGGTCTGCGAAGTACACCTACCAAG
TGGCGAATGCCCTCAACTACTGTCACCTGAACAACGTGATCCATCGGGAT
CTGAAGCCGGAGAACATTCTGCTAACCAGCACGGACGACCTTAAGCTGGC
CGACTTTGGTTGGTCGGCGCACACGCCGAACAACAAGCGCAGGACTCTGT
GCGGCACCCTGGACTATCTGCCGCCGGAGATGGTGGATGGGAACTCCTAC
GACGACTCGGTGGACCAGTGGTGCCTGGGCATTCTGTGCTACGAGTTCGT
CGTCGGCTGTCCGCCCTTCGAGTCGAACAGCACGGAGAGCACCTACAGCA
AGATCCGGCGCATGGAGATCTCCTACCCATCGCATTTGTCCAAGGGCTGC
AAGGAATTGATTGGCGGGCTGCTTTCGCAGGAAAGCAAGGGGCGCATCAC
CTTGGTGGATGTGATGACCCAT

BS06216.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:20:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6620-PA 990 ial-RA 1..858 17..874 4290 100 Plus
CG6620-PA 990 ial-RA 863..906 879..922 195 97.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:23
Subject Length Description Subject Range Query Range Score Percent Strand
aurB-RA 1183 CG6620-RA 117..1023 16..922 4475 99.7 Plus
aurA-RA 1577 CG3068-RA 1009..1139 554..684 180 76.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10857071..10857788 868..151 3590 100 Minus
2L 23513712 2L 10857839..10857978 155..16 685 99.3 Minus
2L 23513712 2L 10856957..10857000 922..879 205 97.7 Minus
Blast to na_te.dros performed on 2015-02-12 20:00:22 has no hits.

BS06216.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:15 Download gff for BS06216.5prime
Subject Subject Range Query Range Percent Splice Strand
ial-PA 1..906 17..922 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:02 Download gff for BS06216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6620-PA 1..906 17..922 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:33:26 Download gff for BS06216.5prime
Subject Subject Range Query Range Percent Splice Strand
ial-RA 107..1023 2..922 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:28:22 Download gff for BS06216.5prime
Subject Subject Range Query Range Percent Splice Strand
aurB-RA 107..1023 2..922 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:28:22 Download gff for BS06216.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10856957..10857010 869..922 94 <- Minus
2L 10857071..10857788 151..868 100 <- Minus
2L 10857844..10857988 2..150 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:33:26 Download gff for BS06216.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10856957..10857010 869..922 94 <- Minus
arm_2L 10857071..10857788 151..868 100 <- Minus
arm_2L 10857844..10857988 2..150 96   Minus

BS06216.complete Sequence

1022 bp (1022 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635399

> BS06216.complete
GAAGTTATCAGTCGACATGACGCTTTCCCGCGCGAAGCACGCCAACCGCA
ACCACCTGCCGCACCTGCTGGCCAAGGTGCCCGAGGAGCACCAGGAGCCG
ATCAAGAATATGTGCCTCAAGATGATGTCCCACGACGCATACGGACAGCC
ATACGATTGGAGTCCCCGGGACTTTGAGATGGGCGCCCACTTGGGACGCG
GCAAATTTGGACGTGTCTACTTGGCGCGGGAGCGCCACTCGCACTATCTG
GTGGCCATGAAGGTGATGTTCAAAGAGGAGCTGCGCAAGGGCTGCGTGCA
GCGTCAGGTTCTACGCGAGATCGAGATCCAGTCGCGACTGAAGCACCCGC
ACATCCTGCGCCTGCTCACTTGGTTCCACGACGAGAGCCGCATCTATCTG
GCCCTGGAAATTGCGTCCGAGGGCGAGCTGTTCAAGCACCTGCGTGGCGC
ACCCAATCATCGATTCGATGAACCGCGGTCTGCGAAGTACACCTACCAAG
TGGCGAATGCCCTCAACTACTGTCACCTGAACAACGTGATCCATCGGGAT
CTGAAGCCGGAGAACATTCTGCTAACCAGCACGGACGACCTTAAGCTGGC
CGACTTTGGTTGGTCGGCGCACACGCCGAACAACAAGCGCAGGACTCTGT
GCGGCACCCTGGACTATCTGCCGCCGGAGATGGTGGATGGGAACTCCTAC
GACGACTCGGTGGACCAGTGGTGCCTGGGCATTCTGTGCTACGAGTTCGT
CGTCGGCTGTCCGCCCTTCGAGTCGAACAGCACGGAGAGCACCTACAGCA
AGATCCGGCGCATGGAGATCTCCTACCCATCGCATTTGTCCAAGGGCTGC
AAGGAATTGATTGGCGGGCTGCTTCGCAAGGAAAGCAAGGGCCGCATCAC
CTTGGTGGATGTGATGACCCATTATTGGGTGAAGGCGGGAATGGCCGAAA
GGGAGCTGCAGCTGCAGAAACGGGAGCGCGGCAAGGAGAACACGGCCAGA
AATTGAAAGCTTTCTAGACCAT

BS06216.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:05:20
Subject Length Description Subject Range Query Range Score Percent Strand
aurB-RA 990 CG6620-PA 1..990 17..1006 4950 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:05:22
Subject Length Description Subject Range Query Range Score Percent Strand
aurB-RA 1183 CG6620-RA 117..1107 16..1006 4955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10857071..10857788 868..151 3590 100 Minus
2L 23513712 2L 10856873..10857011 1006..868 695 100 Minus
2L 23513712 2L 10857839..10857978 155..16 685 99.3 Minus
Blast to na_te.dros performed on 2014-11-27 13:05:19 has no hits.

BS06216.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:26 Download gff for BS06216.complete
Subject Subject Range Query Range Percent Splice Strand
ial-RA 1..990 17..1006 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:04 Download gff for BS06216.complete
Subject Subject Range Query Range Percent Splice Strand
ial-RA 95..1106 2..1017 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:51:41 Download gff for BS06216.complete
Subject Subject Range Query Range Percent Splice Strand
ial-RA 118..1106 17..1005 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:26 Download gff for BS06216.complete
Subject Subject Range Query Range Percent Splice Strand
ial-RA 95..1106 2..1017 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:10:38 Download gff for BS06216.complete
Subject Subject Range Query Range Percent Splice Strand
aurB-RA 118..1106 17..1005 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:10:38 Download gff for BS06216.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10856874..10857010 869..1005 100 <- Minus
2L 10857071..10857788 151..868 100 <- Minus
2L 10857844..10857977 17..150 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:51:41 Download gff for BS06216.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10856874..10857010 869..1005 100 <- Minus
arm_2L 10857071..10857788 151..868 100 <- Minus
arm_2L 10857844..10857977 17..150 100   Minus

BS06216.pep Sequence

Translation from 16 to 1005

> BS06216.pep
MTLSRAKHANRNHLPHLLAKVPEEHQEPIKNMCLKMMSHDAYGQPYDWSP
RDFEMGAHLGRGKFGRVYLARERHSHYLVAMKVMFKEELRKGCVQRQVLR
EIEIQSRLKHPHILRLLTWFHDESRIYLALEIASEGELFKHLRGAPNHRF
DEPRSAKYTYQVANALNYCHLNNVIHRDLKPENILLTSTDDLKLADFGWS
AHTPNNKRRTLCGTLDYLPPEMVDGNSYDDSVDQWCLGILCYEFVVGCPP
FESNSTESTYSKIRRMEISYPSHLSKGCKELIGGLLRKESKGRITLVDVM
THYWVKAGMAERELQLQKRERGKENTARN*

BS06216.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:00
Subject Length Description Subject Range Query Range Score Percent Strand
aurB-PA 329 CG6620-PA 1..329 1..329 1774 100 Plus
aurA-PA 411 CG3068-PA 149..408 48..307 718 51.9 Plus
SAK-PA 769 CG7186-PA 1..264 36..302 470 38.2 Plus
Pka-C1-PD 353 CG4379-PD 45..277 52..287 412 37.7 Plus
Pka-C1-PC 353 CG4379-PC 45..277 52..287 412 37.7 Plus