Clone BS06223 Report

Search the DGRC for BS06223

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptPQBP1-RA
Protein status:BS06223.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06223.3prime Sequence

726 bp (725 high quality bases) assembled on 2005-12-03

> BS06223.3prime
ATGGTCTAGAAAGCTTCTAGTTATCATTACGGCGACGTCGTTGGATTTTT
CGTTCCAGGTCCCTGGACTTTTGCTTCTTGGCGGGAACGAATACGTCGGG
CTCGTCGGGTTCATTTTGGTTAGAAGACTTGGGCTGAACCATGTTGGTAT
CGAAGTTGAACTCATCGTTGGAGTTGGCCAGTTGTCTGCGAAACACTGCG
GCGCTGTTGGTGATCCGTGCTTTGGGATGCGAAGGAGGTAGCCACGAAAC
AGTCTGTGTGGTCGAGTTATAGAAGTAAAACGCCTTGCAGCCCTTATCGT
AGACATCCTTCCAGCCCGCCTCCAGTGGATACTTCCGCAGCAATCTCTTG
TAGCGCTTGAGATACCTATGGCTGGGCTGCGAAAGCGGCGAGCTGTTGAA
CTTGTTTACGCAGTACAGCGAGCACTTGTGGTATATGTTGTATTTGTTGG
GACACAGCTTGTAGCCATGGTAGGACTCGTTCACGCCGATCCGCTCCTTG
ATGCGGTGCGACCAGAACTTCTCCTCGACGCTCCTGCGCTTGGGCTCCGG
CGATGTGTCCTCCTTGTACGGGTAAGGGCCGCTCTTGTCATCGTCATCGT
AGTTCTCGGCTATAATCTCTTCTATAGCTTCTGAAATCGGTGCTGCTCCC
GACTGTTTGGTCACAAGTCCGCGCTTCTTCAGGCGCTGCAATAGTGCAGC
TGGCAGGCTCATGTCGACTGATAACT

BS06223.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11820-PA 696 CG11820-RA 1..696 712..17 3480 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:34:46
Subject Length Description Subject Range Query Range Score Percent Strand
PQBP1-RA 868 CG11820-RA 88..783 712..17 3480 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:34:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25066001..25066633 649..17 3165 100 Minus
3R 32079331 3R 25065878..25065942 712..648 325 100 Minus
Blast to na_te.dros performed on 2015-02-09 01:34:42 has no hits.

BS06223.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:29 Download gff for BS06223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11820-PA 1..696 17..712 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:20 Download gff for BS06223.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11820-PA 1..696 17..712 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:55:47 Download gff for BS06223.3prime
Subject Subject Range Query Range Percent Splice Strand
PQBP1-RA 80..791 7..722 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:09:34 Download gff for BS06223.3prime
Subject Subject Range Query Range Percent Splice Strand
PQBP1-RA 80..791 7..722 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:09:34 Download gff for BS06223.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 25065870..25065941 649..722 94 -> Minus
3R 25066002..25066641 7..648 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:55:47 Download gff for BS06223.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20891592..20891663 649..722 94 -> Minus
arm_3R 20891724..20892363 7..648 99   Minus

BS06223.5prime Sequence

726 bp (725 high quality bases) assembled on 2005-12-03

> BS06223.5prime
GAAGTTATCAGTCGACATGAGCCTGCCAGCTGCACTATTGCAGCGCCTGA
AGAAGCGCGGACTTGTGACCAAACAGTCGGGAGCAGCACCGATTTCAGAA
GCTATAGAAGAGATTATAGCCGAGAACTACGATGACGATGACAAGAGCGG
CCCTTACCCGTACAAGGAGGACACATCGCCGGAGCCCAAGCGCAGGAGCG
TCGAGGAGAAGTTCTGGTCGCACCGCATCAAGGAGCGGATCGGCGTGAAC
GAGTCCTACCATGGCTACAAGCTGTGTCCCAACAAATACAACATATACCA
CAAGTGCTCGCTGTACTGCGTAAACAAGTTCAACAGCTCGCCGCTTTCGC
AGCCCAGCCATAGGTATCTCAAGCGCTACAAGAGATTGCTGCGGAAGTAT
CCACTGGAGGCGGGCTGGAAGGATGTCTACGATAAGGGCTGCAAGGCGTT
TTACTTCTATAACTCGACCACACAGACTGTTTCGTGGCTACCTCCTTCGC
ATCCCAAAGCACGGATCACCAACAGCGCCGCAGTGTTTCGCAGACAACTG
GCCAACTCCAACGATGAGTTCAACTTCGATACCAACATGGTTCAGCCCAA
GTCTTCTAACCAAAATGAACCCGACGAGCCCGACGTATTCGTTCCCGCCA
AGAAGCAAAAGTCCAGGGACCTGGAACGAAAAATCCAACGACGTCGCCGT
AATGATAACTAGAAGCTTTCTAGACC

BS06223.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG11820-PA 696 CG11820-RA 1..696 17..712 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
PQBP1-RA 868 CG11820-RA 88..783 17..712 3480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25066001..25066633 80..712 3165 100 Plus
3R 32079331 3R 25065878..25065942 17..81 325 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:35:43 has no hits.

BS06223.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:30 Download gff for BS06223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11820-PA 1..696 17..712 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:22 Download gff for BS06223.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11820-PA 1..696 17..712 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:19:51 Download gff for BS06223.5prime
Subject Subject Range Query Range Percent Splice Strand
PQBP1-RA 80..791 7..722 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:18 Download gff for BS06223.5prime
Subject Subject Range Query Range Percent Splice Strand
PQBP1-RA 80..791 7..722 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:18 Download gff for BS06223.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 25065870..25065941 7..80 94 -> Plus
3R 25066002..25066641 81..722 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:19:51 Download gff for BS06223.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20891592..20891663 7..80 94 -> Plus
arm_3R 20891724..20892363 81..722 99   Plus

BS06223.complete Sequence

728 bp (728 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635400

> BS06223.complete
GAAGTTATCAGTCGACATGAGCCTGCCAGCTGCACTATTGCAGCGCCTGA
AGAAGCGCGGACTTGTGACCAAACAGTCGGGAGCAGCACCGATTTCAGAA
GCTATAGAAGAGATTATAGCCGAGAACTACGATGACGATGACAAGAGCGG
CCCTTACCCGTACAAGGAGGACACATCGCCGGAGCCCAAGCGCAGGAGCG
TCGAGGAGAAGTTCTGGTCGCACCGCATCAAGGAGCGGATCGGCGTGAAC
GAGTCCTACCATGGCTACAAGCTGTGTCCCAACAAATACAACATATACCA
CAAGTGCTCGCTGTACTGCGTAAACAAGTTCAACAGCTCGCCGCTTTCGC
AGCCCAGCCATAGGTATCTCAAGCGCTACAAGAGATTGCTGCGGAAGTAT
CCACTGGAGGCGGGCTGGAAGGATGTCTACGATAAGGGCTGCAAGGCGTT
TTACTTCTATAACTCGACCACACAGACTGTTTCGTGGCTACCTCCTTCGC
ATCCCAAAGCACGGATCACCAACAGCGCCGCAGTGTTTCGCAGACAACTG
GCCAACTCCAACGATGAGTTCAACTTCGATACCAACATGGTTCAGCCCAA
GTCTTCTAACCAAAATGAACCCGACGAGCCCGACGTATTCGTTCCCGCCA
AGAAGCAAAAGTCCAGGGACCTGGAACGAAAAATCCAACGACGTCGCCGT
AATGATAACTAGAAGCTTTCTAGACCAT

BS06223.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:52
Subject Length Description Subject Range Query Range Score Percent Strand
PQBP1-RA 696 CG11820-PA 1..696 17..712 3480 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:53
Subject Length Description Subject Range Query Range Score Percent Strand
PQBP1-RA 868 CG11820-RA 88..783 17..712 3480 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 25066001..25066633 80..712 3165 100 Plus
3R 32079331 3R 25065878..25065942 17..81 325 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:13:51 has no hits.

BS06223.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:28 Download gff for BS06223.complete
Subject Subject Range Query Range Percent Splice Strand
CG11820-RA 1..696 17..712 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:07 Download gff for BS06223.complete
Subject Subject Range Query Range Percent Splice Strand
CG11820-RA 67..778 7..722 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:24 Download gff for BS06223.complete
Subject Subject Range Query Range Percent Splice Strand
PQBP1-RA 88..783 17..712 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:28 Download gff for BS06223.complete
Subject Subject Range Query Range Percent Splice Strand
CG11820-RA 67..778 7..722 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:50 Download gff for BS06223.complete
Subject Subject Range Query Range Percent Splice Strand
PQBP1-RA 88..783 17..712 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:50 Download gff for BS06223.complete
Subject Subject Range Query Range Percent Splice Strand
3R 25065878..25065941 17..80 100 -> Plus
3R 25066002..25066633 81..712 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:24 Download gff for BS06223.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 20891600..20891663 17..80 100 -> Plus
arm_3R 20891724..20892355 81..712 100   Plus

BS06223.pep Sequence

Translation from 16 to 711

> BS06223.pep
MSLPAALLQRLKKRGLVTKQSGAAPISEAIEEIIAENYDDDDKSGPYPYK
EDTSPEPKRRSVEEKFWSHRIKERIGVNESYHGYKLCPNKYNIYHKCSLY
CVNKFNSSPLSQPSHRYLKRYKRLLRKYPLEAGWKDVYDKGCKAFYFYNS
TTQTVSWLPPSHPKARITNSAAVFRRQLANSNDEFNFDTNMVQPKSSNQN
EPDEPDVFVPAKKQKSRDLERKIQRRRRNDN*

BS06223.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:49
Subject Length Description Subject Range Query Range Score Percent Strand
PQBP1-PA 231 CG11820-PA 1..231 1..231 1242 100 Plus