Clone Sequence Records
BS06223.3prime Sequence
726 bp (725 high quality bases) assembled on 2005-12-03
> BS06223.3prime
ATGGTCTAGAAAGCTTCTAGTTATCATTACGGCGACGTCGTTGGATTTTT
CGTTCCAGGTCCCTGGACTTTTGCTTCTTGGCGGGAACGAATACGTCGGG
CTCGTCGGGTTCATTTTGGTTAGAAGACTTGGGCTGAACCATGTTGGTAT
CGAAGTTGAACTCATCGTTGGAGTTGGCCAGTTGTCTGCGAAACACTGCG
GCGCTGTTGGTGATCCGTGCTTTGGGATGCGAAGGAGGTAGCCACGAAAC
AGTCTGTGTGGTCGAGTTATAGAAGTAAAACGCCTTGCAGCCCTTATCGT
AGACATCCTTCCAGCCCGCCTCCAGTGGATACTTCCGCAGCAATCTCTTG
TAGCGCTTGAGATACCTATGGCTGGGCTGCGAAAGCGGCGAGCTGTTGAA
CTTGTTTACGCAGTACAGCGAGCACTTGTGGTATATGTTGTATTTGTTGG
GACACAGCTTGTAGCCATGGTAGGACTCGTTCACGCCGATCCGCTCCTTG
ATGCGGTGCGACCAGAACTTCTCCTCGACGCTCCTGCGCTTGGGCTCCGG
CGATGTGTCCTCCTTGTACGGGTAAGGGCCGCTCTTGTCATCGTCATCGT
AGTTCTCGGCTATAATCTCTTCTATAGCTTCTGAAATCGGTGCTGCTCCC
GACTGTTTGGTCACAAGTCCGCGCTTCTTCAGGCGCTGCAATAGTGCAGC
TGGCAGGCTCATGTCGACTGATAACT
BS06223.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11820-PA | 696 | CG11820-RA | 1..696 | 712..17 | 3480 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:34:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PQBP1-RA | 868 | CG11820-RA | 88..783 | 712..17 | 3480 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:34:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25066001..25066633 | 649..17 | 3165 | 100 | Minus |
3R | 32079331 | 3R | 25065878..25065942 | 712..648 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 01:34:42 has no hits.
BS06223.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:29 Download gff for
BS06223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11820-PA | 1..696 | 17..712 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:20 Download gff for
BS06223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11820-PA | 1..696 | 17..712 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:55:47 Download gff for
BS06223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PQBP1-RA | 80..791 | 7..722 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:09:34 Download gff for
BS06223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PQBP1-RA | 80..791 | 7..722 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:09:34 Download gff for
BS06223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25065870..25065941 | 649..722 | 94 | -> | Minus |
3R | 25066002..25066641 | 7..648 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:55:47 Download gff for
BS06223.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20891592..20891663 | 649..722 | 94 | -> | Minus |
arm_3R | 20891724..20892363 | 7..648 | 99 | | Minus |
BS06223.5prime Sequence
726 bp (725 high quality bases) assembled on 2005-12-03
> BS06223.5prime
GAAGTTATCAGTCGACATGAGCCTGCCAGCTGCACTATTGCAGCGCCTGA
AGAAGCGCGGACTTGTGACCAAACAGTCGGGAGCAGCACCGATTTCAGAA
GCTATAGAAGAGATTATAGCCGAGAACTACGATGACGATGACAAGAGCGG
CCCTTACCCGTACAAGGAGGACACATCGCCGGAGCCCAAGCGCAGGAGCG
TCGAGGAGAAGTTCTGGTCGCACCGCATCAAGGAGCGGATCGGCGTGAAC
GAGTCCTACCATGGCTACAAGCTGTGTCCCAACAAATACAACATATACCA
CAAGTGCTCGCTGTACTGCGTAAACAAGTTCAACAGCTCGCCGCTTTCGC
AGCCCAGCCATAGGTATCTCAAGCGCTACAAGAGATTGCTGCGGAAGTAT
CCACTGGAGGCGGGCTGGAAGGATGTCTACGATAAGGGCTGCAAGGCGTT
TTACTTCTATAACTCGACCACACAGACTGTTTCGTGGCTACCTCCTTCGC
ATCCCAAAGCACGGATCACCAACAGCGCCGCAGTGTTTCGCAGACAACTG
GCCAACTCCAACGATGAGTTCAACTTCGATACCAACATGGTTCAGCCCAA
GTCTTCTAACCAAAATGAACCCGACGAGCCCGACGTATTCGTTCCCGCCA
AGAAGCAAAAGTCCAGGGACCTGGAACGAAAAATCCAACGACGTCGCCGT
AATGATAACTAGAAGCTTTCTAGACC
BS06223.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11820-PA | 696 | CG11820-RA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:35:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PQBP1-RA | 868 | CG11820-RA | 88..783 | 17..712 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:35:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25066001..25066633 | 80..712 | 3165 | 100 | Plus |
3R | 32079331 | 3R | 25065878..25065942 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:35:43 has no hits.
BS06223.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:30 Download gff for
BS06223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11820-PA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:22 Download gff for
BS06223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11820-PA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:19:51 Download gff for
BS06223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PQBP1-RA | 80..791 | 7..722 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:08:18 Download gff for
BS06223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PQBP1-RA | 80..791 | 7..722 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:08:18 Download gff for
BS06223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25065870..25065941 | 7..80 | 94 | -> | Plus |
3R | 25066002..25066641 | 81..722 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:19:51 Download gff for
BS06223.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20891592..20891663 | 7..80 | 94 | -> | Plus |
arm_3R | 20891724..20892363 | 81..722 | 99 | | Plus |
BS06223.complete Sequence
728 bp (728 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635400
> BS06223.complete
GAAGTTATCAGTCGACATGAGCCTGCCAGCTGCACTATTGCAGCGCCTGA
AGAAGCGCGGACTTGTGACCAAACAGTCGGGAGCAGCACCGATTTCAGAA
GCTATAGAAGAGATTATAGCCGAGAACTACGATGACGATGACAAGAGCGG
CCCTTACCCGTACAAGGAGGACACATCGCCGGAGCCCAAGCGCAGGAGCG
TCGAGGAGAAGTTCTGGTCGCACCGCATCAAGGAGCGGATCGGCGTGAAC
GAGTCCTACCATGGCTACAAGCTGTGTCCCAACAAATACAACATATACCA
CAAGTGCTCGCTGTACTGCGTAAACAAGTTCAACAGCTCGCCGCTTTCGC
AGCCCAGCCATAGGTATCTCAAGCGCTACAAGAGATTGCTGCGGAAGTAT
CCACTGGAGGCGGGCTGGAAGGATGTCTACGATAAGGGCTGCAAGGCGTT
TTACTTCTATAACTCGACCACACAGACTGTTTCGTGGCTACCTCCTTCGC
ATCCCAAAGCACGGATCACCAACAGCGCCGCAGTGTTTCGCAGACAACTG
GCCAACTCCAACGATGAGTTCAACTTCGATACCAACATGGTTCAGCCCAA
GTCTTCTAACCAAAATGAACCCGACGAGCCCGACGTATTCGTTCCCGCCA
AGAAGCAAAAGTCCAGGGACCTGGAACGAAAAATCCAACGACGTCGCCGT
AATGATAACTAGAAGCTTTCTAGACCAT
BS06223.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:13:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PQBP1-RA | 696 | CG11820-PA | 1..696 | 17..712 | 3480 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PQBP1-RA | 868 | CG11820-RA | 88..783 | 17..712 | 3480 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25066001..25066633 | 80..712 | 3165 | 100 | Plus |
3R | 32079331 | 3R | 25065878..25065942 | 17..81 | 325 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:13:51 has no hits.
BS06223.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:28 Download gff for
BS06223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11820-RA | 1..696 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:07 Download gff for
BS06223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11820-RA | 67..778 | 7..722 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:24 Download gff for
BS06223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PQBP1-RA | 88..783 | 17..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:28 Download gff for
BS06223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11820-RA | 67..778 | 7..722 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:13:50 Download gff for
BS06223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
PQBP1-RA | 88..783 | 17..712 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:13:50 Download gff for
BS06223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25065878..25065941 | 17..80 | 100 | -> | Plus |
3R | 25066002..25066633 | 81..712 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:24 Download gff for
BS06223.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20891600..20891663 | 17..80 | 100 | -> | Plus |
arm_3R | 20891724..20892355 | 81..712 | 100 | | Plus |
BS06223.pep Sequence
Translation from 16 to 711
> BS06223.pep
MSLPAALLQRLKKRGLVTKQSGAAPISEAIEEIIAENYDDDDKSGPYPYK
EDTSPEPKRRSVEEKFWSHRIKERIGVNESYHGYKLCPNKYNIYHKCSLY
CVNKFNSSPLSQPSHRYLKRYKRLLRKYPLEAGWKDVYDKGCKAFYFYNS
TTQTVSWLPPSHPKARITNSAAVFRRQLANSNDEFNFDTNMVQPKSSNQN
EPDEPDVFVPAKKQKSRDLERKIQRRRRNDN*
BS06223.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
PQBP1-PA | 231 | CG11820-PA | 1..231 | 1..231 | 1242 | 100 | Plus |