Clone BS06224 Report

Search the DGRC for BS06224

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:24
Vector:pDNR-Dual
Associated Gene/TranscriptRae1-RA
Protein status:BS06224.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06224.3prime Sequence

844 bp (732 high quality bases) assembled on 2005-12-03

> BS06224.3prime
ATGGTCTAGAAAGCTTTCAGTTAATGCGCGGCTTGAGCTCGTCGTAGCAC
GAGCGCAGAAAGATTTGGGGCTTCTTGGCCGGGTTGAAGTACTCGTGGCC
CTTCGACCAGTCGTAGCCGACGGCGTACGCAAATATCTGGCCGTTGGCGT
TAAATCCGCATTTGGTAATGGACTGATCCATGGTCTCGCTGGACTTGAGC
TTGGTCCGGGCATCCTTGTCCCAGAAACTGAAGGTGCCATCTGAGCCAAC
GGTCACCAGGGTGCCGTGCACAGGGTGGAATGCGATGTCATTTACTGCAT
AAATATCCTGGTAGCCTGAGGTGCCCGTAGTACGGTGGCACTTGAAGGTG
AAGTTATCTTTTGGATTCCCCGGATTCACATACTGAATGGCCACACGGCC
CTCAATGCTGCCCAGCGCACAGCCTGTGGGCTCTTTTTTCTTGTCCCGGA
AAATGGAAATGGCACGGTGCTGGTACTTCAGCGGACTCTCCTGCCGCTTG
TACTCGGTTGGGCTATTCTGCAGCGAGTATATGATGAGTCCTCTGTTGGC
CGTGCCCACCACGGCCATCGGATACTCCACATCGGCGCAGTAGCACCGCT
CGGGTAGATTGATGGTCATCATGGGATTGGGCGAACGGGTGTCCCAGAAC
TTTAGGGTCTTGTCCCAGGAGCCGGTCATGAGGCAGGTGTACGTGGGTCC
CTTGACCATGTGGCACGTCTTAACGGGACCGTCGTGGGCCGCCACTTGCA
TCACTTGATCGGAGGCGAAGGTCCAGAGCTTCACCTGCTTGTCGCAGGAG
GCGACGAACACTTTGCTGCCGTCGTCCGACCAGCAAACGTCCAG

BS06224.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG9862-PA 1041 Rae1-RA 290..1041 768..17 3760 100 Minus
CG9862-PA 1041 Rae1-RA 214..285 844..773 360 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:04:59
Subject Length Description Subject Range Query Range Score Percent Strand
Rae1-RA 1189 CG9862-RA 289..1116 844..17 4095 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21658843..21659477 17..651 3175 100 Plus
2R 25286936 2R 21659525..21659719 650..844 930 98.5 Plus
Blast to na_te.dros performed on 2015-01-30 15:04:55 has no hits.

BS06224.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:31 Download gff for BS06224.3prime
Subject Subject Range Query Range Percent Splice Strand
Rae1-PA 214..1041 17..844 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:23 Download gff for BS06224.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9862-PA 214..1041 17..844 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:09:30 Download gff for BS06224.3prime
Subject Subject Range Query Range Percent Splice Strand
Rae1-RA 289..1116 17..844 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:26 Download gff for BS06224.3prime
Subject Subject Range Query Range Percent Splice Strand
Rae1-RA 289..1116 17..844 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:26 Download gff for BS06224.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21658843..21659475 17..649 100 <- Plus
2R 21659525..21659719 650..844 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:09:30 Download gff for BS06224.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17546348..17546980 17..649 100 <- Plus
arm_2R 17547030..17547224 650..844 98   Plus

BS06224.5prime Sequence

930 bp (805 high quality bases) assembled on 2005-12-03

> BS06224.5prime
GAAGTTATCAGTCGACATGTTTGGCGCCACACAATCGACGAACCGAATGA
ACGACTTCGAGGTCGCCTCGCCGCCGGACGACTCCGTCTCGGCGCTGGAG
TTCAGCCCCAGCACGGTGCAGAAGAACTTCCTGGTGGCCGGAAGCTGGGA
CAGCACGGTCCGCTGCTGGGAGGTGGAACAAAACGGGGCCACTGTGCCCA
AGTCGATGAAGACCATGGGCGGACCGGTGCTGGACGTTTGCTGGTCGGAC
GACGGCAGCAAAGTGTTCGTCGCCTCCTGCGACAAGCAGGTGAAGCTCTG
GGACCTCGCCTCCGATCAAGTGATGCAAGTGGCGGCCCACGACGGTCCCG
TTAAGACGTGCCACATGGTCAAGGGACCCACGTACACCTGCCTCATGACC
GGCTCCTGGGACAAGACCCTAAAGTTCTGGGACACCCGTTCGCCCAATCC
CATGATGACCATCAATCTACCCGAGCGGTGCTACTGCGCCGATGTGGAGT
ATCCGATGGCCGTGGTGGGCACGGCCAACAGAGGACTCATCATATACTCG
CTGCAGAATAGCCCAACCGAGTACAAGCGGCAGGAGAGTCCGCTGAAGTA
CCAGCACCGTGCCATTTCCATTTTCCGGGACAAGAAAAAAGAGCCCACAG
GCTGTGCGCTGGGCAGCATTGAGGGCCGTGTGGCCATTCAGTATGTGAAT
CCGGGGAATCCAAAAGATAACTTCACCTTCAAGTGCCACCGTACTACGGG
CACCTCAGGCTACCAGGATATTTATGCAGTAAATGACATCGCATTCCACC
CTGTGCACGGCACCCTGGTGACCGTTGGCTCAGATGGCACCTTCAGTTTC
TGGGACAAGGATGCCCGGACCAAGCTCAAGTCCAGCGAGACCATGGATCA
GTCCATTACCAAATGCGGATTTAACGCCCA

BS06224.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG9862-PA 1041 Rae1-RA 1..912 17..928 4560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
Rae1-RA 1189 CG9862-RA 76..987 17..928 4560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21658972..21659477 928..423 2530 100 Minus
2R 25286936 2R 21659525..21659932 424..17 2040 100 Minus
Blast to na_te.dros performed on 2015-02-13 08:35:50 has no hits.

BS06224.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:32 Download gff for BS06224.5prime
Subject Subject Range Query Range Percent Splice Strand
Rae1-PA 1..912 17..929 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:25 Download gff for BS06224.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9862-PA 1..912 17..929 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:18:10 Download gff for BS06224.5prime
Subject Subject Range Query Range Percent Splice Strand
Rae1-RA 69..987 9..929 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:20:01 Download gff for BS06224.5prime
Subject Subject Range Query Range Percent Splice Strand
Rae1-RA 69..987 9..929 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:20:01 Download gff for BS06224.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21658971..21659475 425..929 99 <- Minus
2R 21659525..21659939 9..424 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:18:10 Download gff for BS06224.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17546476..17546980 425..929 99 <- Minus
arm_2R 17547030..17547444 9..424 99   Minus

BS06224.complete Sequence

1073 bp (1073 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635401

> BS06224.complete
GAAGTTATCAGTCGACATGTTTGGCGCCACACAATCGACGAACCGAATGA
ACGACTTCGAGGTCGCCTCGCCGCCGGACGACTCCGTCTCGGCGCTGGAG
TTCAGCCCCAGCACGGTGCAGAAGAACTTCCTGGTGGCCGGAAGCTGGGA
CAGCACGGTCCGCTGCTGGGAGGTGGAACAAAACGGGGCCACTGTGCCCA
AGTCGATGAAGACCATGGGCGGACCGGTGCTGGACGTTTGCTGGTCGGAC
GACGGCAGCAAAGTGTTCGTCGCCTCCTGCGACAAGCAGGTGAAGCTCTG
GGACCTCGCCTCCGATCAAGTGATGCAAGTGGCGGCCCACGACGGTCCCG
TTAAGACGTGCCACATGGTCAAGGGACCCACGTACACCTGCCTCATGACC
GGCTCCTGGGACAAGACCCTAAAGTTCTGGGACACCCGTTCGCCCAATCC
CATGATGACCATCAATCTACCCGAGCGGTGCTACTGCGCCGATGTGGAGT
ATCCGATGGCCGTGGTGGGCACGGCCAACAGAGGACTCATCATATACTCG
CTGCAGAATAGCCCAACCGAGTACAAGCGGCAGGAGAGTCCGCTGAAGTA
CCAGCACCGTGCCATTTCCATTTTCCGGGACAAGAAAAAAGAGCCCACAG
GCTGTGCGCTGGGCAGCATTGAGGGCCGTGTGGCCATTCAGTATGTGAAT
CCGGGGAATCCAAAAGATAACTTCACCTTCAAGTGCCACCGTACTACGGG
CACCTCAGGCTACCAGGATATTTATGCAGTAAATGACATCGCATTCCACC
CTGTGCACGGCACCCTGGTGACCGTTGGCTCAGATGGCACCTTCAGTTTC
TGGGACAAGGATGCCCGGACCAAGCTCAAGTCCAGCGAGACCATGGATCA
GTCCATTACCAAATGCGGATTTAACGCCAACGGCCAGATATTTGCGTACG
CCGTCGGCTACGACTGGTCGAAGGGCCACGAGTACTTCAACCCGGCCAAG
AAGCCCCAAATCTTTCTGCGCTCGTGCTACGACGAGCTCAAGCCGCGCAT
TAACTGAAAGCTTTCTAGACCAT

BS06224.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:35:12
Subject Length Description Subject Range Query Range Score Percent Strand
Rae1-RA 1041 CG9862-PA 1..1041 17..1057 5205 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:35:14
Subject Length Description Subject Range Query Range Score Percent Strand
Rae1-RA 1189 CG9862-RA 76..1116 17..1057 5205 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:35:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21658843..21659477 1057..423 3175 100 Minus
2R 25286936 2R 21659525..21659932 424..17 2040 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:35:11 has no hits.

BS06224.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:29 Download gff for BS06224.complete
Subject Subject Range Query Range Percent Splice Strand
Rae1-RA 1..1041 17..1057 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:09 Download gff for BS06224.complete
Subject Subject Range Query Range Percent Splice Strand
Rae1-RA 65..1112 9..1057 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:44 Download gff for BS06224.complete
Subject Subject Range Query Range Percent Splice Strand
Rae1-RA 82..1115 23..1056 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:30 Download gff for BS06224.complete
Subject Subject Range Query Range Percent Splice Strand
Rae1-RA 65..1112 9..1057 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:08 Download gff for BS06224.complete
Subject Subject Range Query Range Percent Splice Strand
Rae1-RA 82..1115 23..1056 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:08 Download gff for BS06224.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21658844..21659475 425..1056 100 <- Minus
2R 21659525..21659926 23..424 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:44 Download gff for BS06224.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17546349..17546980 425..1056 100 <- Minus
arm_2R 17547030..17547431 23..424 100   Minus

BS06224.pep Sequence

Translation from 16 to 1056

> BS06224.pep
MFGATQSTNRMNDFEVASPPDDSVSALEFSPSTVQKNFLVAGSWDSTVRC
WEVEQNGATVPKSMKTMGGPVLDVCWSDDGSKVFVASCDKQVKLWDLASD
QVMQVAAHDGPVKTCHMVKGPTYTCLMTGSWDKTLKFWDTRSPNPMMTIN
LPERCYCADVEYPMAVVGTANRGLIIYSLQNSPTEYKRQESPLKYQHRAI
SIFRDKKKEPTGCALGSIEGRVAIQYVNPGNPKDNFTFKCHRTTGTSGYQ
DIYAVNDIAFHPVHGTLVTVGSDGTFSFWDKDARTKLKSSETMDQSITKC
GFNANGQIFAYAVGYDWSKGHEYFNPAKKPQIFLRSCYDELKPRIN*

BS06224.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:47
Subject Length Description Subject Range Query Range Score Percent Strand
Rae1-PA 346 CG9862-PA 1..346 1..346 1884 100 Plus
CG12782-PA 336 CG12782-PA 4..328 2..335 675 41.6 Plus
Bub3-PB 326 CG7581-PB 2..297 10..315 401 32.4 Plus
Bub3-PA 326 CG7581-PA 2..297 10..315 401 32.4 Plus