Clone Sequence Records
BS06224.3prime Sequence
844 bp (732 high quality bases) assembled on 2005-12-03
> BS06224.3prime
ATGGTCTAGAAAGCTTTCAGTTAATGCGCGGCTTGAGCTCGTCGTAGCAC
GAGCGCAGAAAGATTTGGGGCTTCTTGGCCGGGTTGAAGTACTCGTGGCC
CTTCGACCAGTCGTAGCCGACGGCGTACGCAAATATCTGGCCGTTGGCGT
TAAATCCGCATTTGGTAATGGACTGATCCATGGTCTCGCTGGACTTGAGC
TTGGTCCGGGCATCCTTGTCCCAGAAACTGAAGGTGCCATCTGAGCCAAC
GGTCACCAGGGTGCCGTGCACAGGGTGGAATGCGATGTCATTTACTGCAT
AAATATCCTGGTAGCCTGAGGTGCCCGTAGTACGGTGGCACTTGAAGGTG
AAGTTATCTTTTGGATTCCCCGGATTCACATACTGAATGGCCACACGGCC
CTCAATGCTGCCCAGCGCACAGCCTGTGGGCTCTTTTTTCTTGTCCCGGA
AAATGGAAATGGCACGGTGCTGGTACTTCAGCGGACTCTCCTGCCGCTTG
TACTCGGTTGGGCTATTCTGCAGCGAGTATATGATGAGTCCTCTGTTGGC
CGTGCCCACCACGGCCATCGGATACTCCACATCGGCGCAGTAGCACCGCT
CGGGTAGATTGATGGTCATCATGGGATTGGGCGAACGGGTGTCCCAGAAC
TTTAGGGTCTTGTCCCAGGAGCCGGTCATGAGGCAGGTGTACGTGGGTCC
CTTGACCATGTGGCACGTCTTAACGGGACCGTCGTGGGCCGCCACTTGCA
TCACTTGATCGGAGGCGAAGGTCCAGAGCTTCACCTGCTTGTCGCAGGAG
GCGACGAACACTTTGCTGCCGTCGTCCGACCAGCAAACGTCCAG
BS06224.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9862-PA | 1041 | Rae1-RA | 290..1041 | 768..17 | 3760 | 100 | Minus |
CG9862-PA | 1041 | Rae1-RA | 214..285 | 844..773 | 360 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:04:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rae1-RA | 1189 | CG9862-RA | 289..1116 | 844..17 | 4095 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21658843..21659477 | 17..651 | 3175 | 100 | Plus |
2R | 25286936 | 2R | 21659525..21659719 | 650..844 | 930 | 98.5 | Plus |
Blast to na_te.dros performed on 2015-01-30 15:04:55 has no hits.
BS06224.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:31 Download gff for
BS06224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rae1-PA | 214..1041 | 17..844 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:23 Download gff for
BS06224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9862-PA | 214..1041 | 17..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:09:30 Download gff for
BS06224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rae1-RA | 289..1116 | 17..844 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:26 Download gff for
BS06224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rae1-RA | 289..1116 | 17..844 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:26 Download gff for
BS06224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21658843..21659475 | 17..649 | 100 | <- | Plus |
2R | 21659525..21659719 | 650..844 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:09:30 Download gff for
BS06224.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17546348..17546980 | 17..649 | 100 | <- | Plus |
arm_2R | 17547030..17547224 | 650..844 | 98 | | Plus |
BS06224.5prime Sequence
930 bp (805 high quality bases) assembled on 2005-12-03
> BS06224.5prime
GAAGTTATCAGTCGACATGTTTGGCGCCACACAATCGACGAACCGAATGA
ACGACTTCGAGGTCGCCTCGCCGCCGGACGACTCCGTCTCGGCGCTGGAG
TTCAGCCCCAGCACGGTGCAGAAGAACTTCCTGGTGGCCGGAAGCTGGGA
CAGCACGGTCCGCTGCTGGGAGGTGGAACAAAACGGGGCCACTGTGCCCA
AGTCGATGAAGACCATGGGCGGACCGGTGCTGGACGTTTGCTGGTCGGAC
GACGGCAGCAAAGTGTTCGTCGCCTCCTGCGACAAGCAGGTGAAGCTCTG
GGACCTCGCCTCCGATCAAGTGATGCAAGTGGCGGCCCACGACGGTCCCG
TTAAGACGTGCCACATGGTCAAGGGACCCACGTACACCTGCCTCATGACC
GGCTCCTGGGACAAGACCCTAAAGTTCTGGGACACCCGTTCGCCCAATCC
CATGATGACCATCAATCTACCCGAGCGGTGCTACTGCGCCGATGTGGAGT
ATCCGATGGCCGTGGTGGGCACGGCCAACAGAGGACTCATCATATACTCG
CTGCAGAATAGCCCAACCGAGTACAAGCGGCAGGAGAGTCCGCTGAAGTA
CCAGCACCGTGCCATTTCCATTTTCCGGGACAAGAAAAAAGAGCCCACAG
GCTGTGCGCTGGGCAGCATTGAGGGCCGTGTGGCCATTCAGTATGTGAAT
CCGGGGAATCCAAAAGATAACTTCACCTTCAAGTGCCACCGTACTACGGG
CACCTCAGGCTACCAGGATATTTATGCAGTAAATGACATCGCATTCCACC
CTGTGCACGGCACCCTGGTGACCGTTGGCTCAGATGGCACCTTCAGTTTC
TGGGACAAGGATGCCCGGACCAAGCTCAAGTCCAGCGAGACCATGGATCA
GTCCATTACCAAATGCGGATTTAACGCCCA
BS06224.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9862-PA | 1041 | Rae1-RA | 1..912 | 17..928 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rae1-RA | 1189 | CG9862-RA | 76..987 | 17..928 | 4560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 08:35:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21658972..21659477 | 928..423 | 2530 | 100 | Minus |
2R | 25286936 | 2R | 21659525..21659932 | 424..17 | 2040 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 08:35:50 has no hits.
BS06224.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:32 Download gff for
BS06224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rae1-PA | 1..912 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:25 Download gff for
BS06224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9862-PA | 1..912 | 17..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 11:18:10 Download gff for
BS06224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rae1-RA | 69..987 | 9..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 10:20:01 Download gff for
BS06224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rae1-RA | 69..987 | 9..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 10:20:01 Download gff for
BS06224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21658971..21659475 | 425..929 | 99 | <- | Minus |
2R | 21659525..21659939 | 9..424 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 11:18:10 Download gff for
BS06224.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17546476..17546980 | 425..929 | 99 | <- | Minus |
arm_2R | 17547030..17547444 | 9..424 | 99 | | Minus |
BS06224.complete Sequence
1073 bp (1073 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635401
> BS06224.complete
GAAGTTATCAGTCGACATGTTTGGCGCCACACAATCGACGAACCGAATGA
ACGACTTCGAGGTCGCCTCGCCGCCGGACGACTCCGTCTCGGCGCTGGAG
TTCAGCCCCAGCACGGTGCAGAAGAACTTCCTGGTGGCCGGAAGCTGGGA
CAGCACGGTCCGCTGCTGGGAGGTGGAACAAAACGGGGCCACTGTGCCCA
AGTCGATGAAGACCATGGGCGGACCGGTGCTGGACGTTTGCTGGTCGGAC
GACGGCAGCAAAGTGTTCGTCGCCTCCTGCGACAAGCAGGTGAAGCTCTG
GGACCTCGCCTCCGATCAAGTGATGCAAGTGGCGGCCCACGACGGTCCCG
TTAAGACGTGCCACATGGTCAAGGGACCCACGTACACCTGCCTCATGACC
GGCTCCTGGGACAAGACCCTAAAGTTCTGGGACACCCGTTCGCCCAATCC
CATGATGACCATCAATCTACCCGAGCGGTGCTACTGCGCCGATGTGGAGT
ATCCGATGGCCGTGGTGGGCACGGCCAACAGAGGACTCATCATATACTCG
CTGCAGAATAGCCCAACCGAGTACAAGCGGCAGGAGAGTCCGCTGAAGTA
CCAGCACCGTGCCATTTCCATTTTCCGGGACAAGAAAAAAGAGCCCACAG
GCTGTGCGCTGGGCAGCATTGAGGGCCGTGTGGCCATTCAGTATGTGAAT
CCGGGGAATCCAAAAGATAACTTCACCTTCAAGTGCCACCGTACTACGGG
CACCTCAGGCTACCAGGATATTTATGCAGTAAATGACATCGCATTCCACC
CTGTGCACGGCACCCTGGTGACCGTTGGCTCAGATGGCACCTTCAGTTTC
TGGGACAAGGATGCCCGGACCAAGCTCAAGTCCAGCGAGACCATGGATCA
GTCCATTACCAAATGCGGATTTAACGCCAACGGCCAGATATTTGCGTACG
CCGTCGGCTACGACTGGTCGAAGGGCCACGAGTACTTCAACCCGGCCAAG
AAGCCCCAAATCTTTCTGCGCTCGTGCTACGACGAGCTCAAGCCGCGCAT
TAACTGAAAGCTTTCTAGACCAT
BS06224.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rae1-RA | 1041 | CG9862-PA | 1..1041 | 17..1057 | 5205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:35:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rae1-RA | 1189 | CG9862-RA | 76..1116 | 17..1057 | 5205 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:35:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21658843..21659477 | 1057..423 | 3175 | 100 | Minus |
2R | 25286936 | 2R | 21659525..21659932 | 424..17 | 2040 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:35:11 has no hits.
BS06224.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:29 Download gff for
BS06224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rae1-RA | 1..1041 | 17..1057 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:58:09 Download gff for
BS06224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rae1-RA | 65..1112 | 9..1057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:23:44 Download gff for
BS06224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rae1-RA | 82..1115 | 23..1056 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:30 Download gff for
BS06224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rae1-RA | 65..1112 | 9..1057 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:01:08 Download gff for
BS06224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rae1-RA | 82..1115 | 23..1056 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:01:08 Download gff for
BS06224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21658844..21659475 | 425..1056 | 100 | <- | Minus |
2R | 21659525..21659926 | 23..424 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:23:44 Download gff for
BS06224.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17546349..17546980 | 425..1056 | 100 | <- | Minus |
arm_2R | 17547030..17547431 | 23..424 | 100 | | Minus |
BS06224.pep Sequence
Translation from 16 to 1056
> BS06224.pep
MFGATQSTNRMNDFEVASPPDDSVSALEFSPSTVQKNFLVAGSWDSTVRC
WEVEQNGATVPKSMKTMGGPVLDVCWSDDGSKVFVASCDKQVKLWDLASD
QVMQVAAHDGPVKTCHMVKGPTYTCLMTGSWDKTLKFWDTRSPNPMMTIN
LPERCYCADVEYPMAVVGTANRGLIIYSLQNSPTEYKRQESPLKYQHRAI
SIFRDKKKEPTGCALGSIEGRVAIQYVNPGNPKDNFTFKCHRTTGTSGYQ
DIYAVNDIAFHPVHGTLVTVGSDGTFSFWDKDARTKLKSSETMDQSITKC
GFNANGQIFAYAVGYDWSKGHEYFNPAKKPQIFLRSCYDELKPRIN*
BS06224.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:02:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rae1-PA | 346 | CG9862-PA | 1..346 | 1..346 | 1884 | 100 | Plus |
CG12782-PA | 336 | CG12782-PA | 4..328 | 2..335 | 675 | 41.6 | Plus |
Bub3-PB | 326 | CG7581-PB | 2..297 | 10..315 | 401 | 32.4 | Plus |
Bub3-PA | 326 | CG7581-PA | 2..297 | 10..315 | 401 | 32.4 | Plus |