Clone BS06225 Report

Search the DGRC for BS06225

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:25
Vector:pDNR-Dual
Associated Gene/TranscriptCG2371-RB
Protein status:BS06225.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06225.5prime Sequence

747 bp (746 high quality bases) assembled on 2005-12-03

> BS06225.5prime
GAAGTTATCAGTCGACATGAGCATTAACTGGATAAAGATCACGGAAAGAG
CCCGTGAGGGCATCAAAATCATCAATGCCTTGCCCTACGAGACCTTTACG
ACGGTTCTGTTCTACACCCACCGGCAGATGAGTCCCAGCGTAGCATCGGC
GAGTGCCACCAGTAGTACAGTGGGCACCAGTGTGACGACCACCGGCCGGG
TGGACAGCAGCACCGAGGAGAACCCCACAAGTAACACCGAACCGGAGTAC
ACACTCGAGGAACTGGAGCGATTGGTGGGCGTACCGCGTCAGGACTTCCT
GCTGCTGATCAAGACCTTCTCCTACATCCTGCGTCGCATCTCCACGTTTA
TCATCAAGCCAAGTTTGCTGCAGCGTGAGCTGCGCGAGAAACTCCAGCTG
GAGGATGAGGCCAAGATCGATGCCATATTGCGTTTGTGGGTGCGCGAAAC
GACGCCCATTATGAACAATTTGGCCAGCAAGCGGTACGAATCAAATGTCA
TCGAAGATGTGGCCTGGAAGCTCAACATGGAGATCTCCTCGCATTGCCAG
CAGCGGGAGAAGACCCCGCTGGCCGTGCTCCAAATGAAAACGGCCGTCGG
CGAGGATATCAACATCGAAATGACACAACCGGAACTAATGGAACTGTACA
ATCAGTTCGAGAGCATCCAGGGCGAACTGGACGCCATGCTGGCCATGAAG
ACTACAGGAGCAACGGCGCCTGGCAATCAGTAGAAGCTTTCTAGACC

BS06225.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG2371-PB 717 CG2371-RB 1..717 17..733 3585 100 Plus
CG2371-PA 606 CG2371-RA 1..606 128..733 3030 100 Plus
CG2371-PC 606 CG2371-RC 1..606 128..733 3030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:27:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG2371-RB 1155 CG2371-RB 118..834 17..733 3585 100 Plus
CG2371-RC 1246 CG2371-RC 239..925 47..733 3435 100 Plus
CG2371-RA 1076 CG2371-RA 148..755 126..733 3040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:27:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11677665..11678351 733..47 3435 100 Minus
Blast to na_te.dros performed on 2015-02-12 06:27:17 has no hits.

BS06225.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:34 Download gff for BS06225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2371-PB 1..717 17..733 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:28 Download gff for BS06225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2371-PB 1..717 17..733 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 11:19:14 Download gff for BS06225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 109..834 6..733 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:10:47 Download gff for BS06225.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 109..834 6..733 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:10:47 Download gff for BS06225.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11677665..11678349 49..733 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 11:19:14 Download gff for BS06225.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11571698..11572382 49..733 100 <- Minus

BS06225.3prime Sequence

747 bp (746 high quality bases) assembled on 2005-12-03

> BS06225.3prime
ATGGTCTAGAAAGCTTCTACTGATTGCCAGGCGCCGTTGCTCCTGTAGTC
TTCATGGCCAGCATGGCGTCCAGTTCGCCCTGGATGCTCTCGAACTGATT
GTACAGTTCCATTAGTTCCGGTTGTGTCATTTCGATGTTGATATCCTCGC
CGACGGCCGTTTTCATTTGGAGCACGGCCAGCGGGGTCTTCTCCCGCTGC
TGGCAATGCGAGGAGATCTCCATGTTGAGCTTCCAGGCCACATCTTCGAT
GACATTTGATTCGTACCGCTTGCTGGCCAAATTGTTCATAATGGGCGTCG
TTTCGCGCACCCACAAACGCAATATGGCATCGATCTTGGCCTCATCCTCC
AGCTGGAGTTTCTCGCGCAGCTCACGCTGCAGCAAACTTGGCTTGATGAT
AAACGTGGAGATGCGACGCAGGATGTAGGAGAAGGTCTTGATCAGCAGCA
GGAAGTCCTGACGCGGTACGCCCACCAATCGCTCCAGTTCCTCGAGTGTG
TACTCCGGTTCGGTGTTACTTGTGGGGTTCTCCTCGGTGCTGCTGTCCAC
CCGGCCGGTGGTCGTCACACTGGTGCCCACTGTACTACTGGTGGCACTCG
CCGATGCTACGCTGGGACTCATCTGCCGGTGGGTGTAGAACAGAACCGTC
GTAAAGGTCTCGTAGGGCAAGGCATTGATGATTTTGATGCCCTCACGGGC
TCTTTCCGTGATCTTTATCCAGTTAATGCTCATGTCGACTGATAACT

BS06225.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG2371-PB 717 CG2371-RB 1..717 733..17 3585 100 Minus
CG2371-PA 606 CG2371-RA 1..606 622..17 3030 100 Minus
CG2371-PC 606 CG2371-RC 1..606 622..17 3030 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG2371-RB 1155 CG2371-RB 118..834 733..17 3585 100 Minus
CG2371-RC 1246 CG2371-RC 239..925 703..17 3435 100 Minus
CG2371-RA 1076 CG2371-RA 148..755 624..17 3040 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11677665..11678351 17..703 3435 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:05:13 has no hits.

BS06225.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:33 Download gff for BS06225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2371-PB 1..717 17..733 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:26 Download gff for BS06225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2371-PB 1..717 17..733 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:50:27 Download gff for BS06225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 109..834 17..744 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:56:39 Download gff for BS06225.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 109..834 17..744 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:56:39 Download gff for BS06225.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11677665..11678349 17..701 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:50:27 Download gff for BS06225.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11571698..11572382 17..701 100 <- Plus

BS06225.complete Sequence

749 bp (749 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635402

> BS06225.complete
GAAGTTATCAGTCGACATGAGCATTAACTGGATAAAGATCACGGAAAGAG
CCCGTGAGGGCATCAAAATCATCAATGCCTTGCCCTACGAGACCTTTACG
ACGGTTCTGTTCTACACCCACCGGCAGATGAGTCCCAGCGTAGCATCGGC
GAGTGCCACCAGTAGTACAGTGGGCACCAGTGTGACGACCACCGGCCGGG
TGGACAGCAGCACCGAGGAGAACCCCACAAGTAACACCGAACCGGAGTAC
ACACTCGAGGAACTGGAGCGATTGGTGGGCGTACCGCGTCAGGACTTCCT
GCTGCTGATCAAGACCTTCTCCTACATCCTGCGTCGCATCTCCACGTTTA
TCATCAAGCCAAGTTTGCTGCAGCGTGAGCTGCGCGAGAAACTCCAGCTG
GAGGATGAGGCCAAGATCGATGCCATATTGCGTTTGTGGGTGCGCGAAAC
GACGCCCATTATGAACAATTTGGCCAGCAAGCGGTACGAATCAAATGTCA
TCGAAGATGTGGCCTGGAAGCTCAACATGGAGATCTCCTCGCATTGCCAG
CAGCGGGAGAAGACCCCGCTGGCCGTGCTCCAAATGAAAACGGCCGTCGG
CGAGGATATCAACATCGAAATGACACAACCGGAACTAATGGAACTGTACA
ATCAGTTCGAGAGCATCCAGGGCGAACTGGACGCCATGCTGGCCATGAAG
ACTACAGGAGCAACGGCGCCTGGCAATCAGTAGAAGCTTTCTAGACCAT

BS06225.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:55:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG2371-RB 717 CG2371-PB 1..717 17..733 3585 100 Plus
CG2371-RC 606 CG2371-PC 1..606 128..733 3030 100 Plus
CG2371-RA 606 CG2371-PA 1..606 128..733 3030 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:55:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG2371-RB 1155 CG2371-RB 118..834 17..733 3585 100 Plus
CG2371-RC 1246 CG2371-RC 239..925 47..733 3435 100 Plus
CG2371-RA 1076 CG2371-RA 148..755 126..733 3040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:55:21
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11677665..11678351 733..47 3435 100 Minus
Blast to na_te.dros performed on 2014-11-27 13:55:22 has no hits.

BS06225.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:12 Download gff for BS06225.complete
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 1..717 17..733 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:47 Download gff for BS06225.complete
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 109..834 6..733 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:38 Download gff for BS06225.complete
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 118..834 17..733 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:13 Download gff for BS06225.complete
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 109..834 6..733 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:59:08 Download gff for BS06225.complete
Subject Subject Range Query Range Percent Splice Strand
CG2371-RB 118..834 17..733 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:59:08 Download gff for BS06225.complete
Subject Subject Range Query Range Percent Splice Strand
X 11677665..11678349 49..733 100 <- Minus
X 11678403..11678434 17..48 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:38 Download gff for BS06225.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11571698..11572382 49..733 100 <- Minus
arm_X 11572436..11572467 17..48 100   Minus

BS06225.pep Sequence

Translation from 16 to 732

> BS06225.pep
MSINWIKITERAREGIKIINALPYETFTTVLFYTHRQMSPSVASASATSS
TVGTSVTTTGRVDSSTEENPTSNTEPEYTLEELERLVGVPRQDFLLLIKT
FSYILRRISTFIIKPSLLQRELREKLQLEDEAKIDAILRLWVRETTPIMN
NLASKRYESNVIEDVAWKLNMEISSHCQQREKTPLAVLQMKTAVGEDINI
EMTQPELMELYNQFESIQGELDAMLAMKTTGATAPGNQ*

BS06225.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG2371-PB 238 CG2371-PB 1..238 1..238 1193 100 Plus
CG2371-PC 201 CG2371-PC 1..201 38..238 1000 100 Plus
CG2371-PA 201 CG2371-PA 1..201 38..238 1000 100 Plus