Clone Sequence Records
BS06229.3prime Sequence
938 bp (788 high quality bases) assembled on 2005-12-03
> BS06229.3prime
ATGGTCTAGAAAGCTTCTAGTTTATTTGCCAGAATATCTGAGACTTTTCT
CGGACAGGATCTCCCTTTTGGATGTCTACGCCATTGATGTACATGGGCGT
AAACTCCCGGTAGGCTACACAAACGCGGCGCTCTTGGACATCCTCGCGTA
GTACAGAATGCTCAAACTGGTACCTCGCTGGCCCATACAAAACTATCAAG
GAGAGGTTTGGCATAGGTATGCGCAGCACCTTTCCCTCAAAAGTTGCAAG
TTGGTCATCTGTCAGTAGAGGCGCCAATAGTTCATCTTCGTAGCTGGCAA
CCAAGTCCAAGTTGTACTTGCCCGATTGTTGAACTTCGTAGGGCGTCAAA
GTGAGCACTGAGTCGCCGAGGCAGTTGACAGTGACCACACGCTCGCCCCA
GATCCAGCAATCGTCCACGTGCGGATCTATGCTGGCTCCTTTGCTGGGCT
CGTACTCCAGGGAGCACTGTTCGATGGTCTGAAAGCCACGAAGCAGGGGA
ACGTCTTCGAAGCGCCGTTGCACATATTCCGTTGTCCTGGGGAATCCGGC
AAAGGATCCCAGCCGCAGTTTGCGCTTTTTAAAGTTGGTCTTGGGTCCGA
AGTTCTGTTTTCGCCTGCCGCTCTGCGAGATGTCCCATGGCAGGTCATCC
AAGTCGGCTATAAGTTGGGCGCCCTCATCAACGCTAAGGAATTCCTCCTG
CACCAGGATGCCCGGCAGTGGGAGGCCCTCATCTTTTTTGTGATTTTCAT
GATCCTTTTGGACATGATTGGTATCCCAACCGCGCTGCAGAAGGTCGCAC
TGGATACAGTAGGACCATGCTTCCAGTTGCTGGAATTGTTCCCGTAGCGA
GGTCTTCGCTATATGAAAGTCCTGTTCGCAGCTCAAGCAGGTGCGAACGC
CCCTACNACCGCAAGGACGAATTGTATTCATGTCGACT
BS06229.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-PA | 915 | CG4036-RA | 1..915 | 931..17 | 4531 | 99.7 | Minus |
CG18854-PA | 282 | CG18854-RA | 81..272 | 374..183 | 660 | 93.7 | Minus |
CG18854-PC | 363 | CG18854-RC | 162..353 | 374..183 | 660 | 93.7 | Minus |
CG18854-PB | 282 | CG18854-RB | 81..272 | 374..183 | 660 | 93.7 | Minus |
CG18854-PA | 282 | CG18854-RA | 18..68 | 914..864 | 186 | 94.1 | Minus |
CG18854-PC | 363 | CG18854-RC | 99..149 | 914..864 | 186 | 94.1 | Minus |
CG18854-PB | 282 | CG18854-RB | 18..68 | 914..864 | 186 | 94.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:59:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-RB | 950 | CG4036-RB | 22..936 | 931..17 | 4549 | 99.8 | Minus |
CG4036-RA | 1002 | CG4036-RA | 74..988 | 931..17 | 4549 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:59:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9790970..9791694 | 931..207 | 3599 | 99.7 | Minus |
2L | 23513712 | 2L | 9791755..9791944 | 206..17 | 950 | 100 | Minus |
2L | 23513712 | 2L | 9789367..9789534 | 207..374 | 705 | 94.6 | Plus |
2L | 23513712 | 2L | 9789536..9789614 | 853..931 | 264 | 88.6 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:59:33 has no hits.
BS06229.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:35 Download gff for
BS06229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-PA | 1..915 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:29 Download gff for
BS06229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-PA | 1..915 | 17..931 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:29:13 Download gff for
BS06229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 71..988 | 17..938 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:46:20 Download gff for
BS06229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 71..988 | 17..938 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:46:20 Download gff for
BS06229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9790967..9791694 | 207..938 | 99 | -> | Minus |
2L | 9791755..9791944 | 17..206 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:29:13 Download gff for
BS06229.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9790967..9791694 | 207..938 | 99 | -> | Minus |
arm_2L | 9791755..9791944 | 17..206 | 100 | | Minus |
BS06229.5prime Sequence
893 bp (869 high quality bases) assembled on 2005-12-03
> BS06229.5prime
GAAGTTATCAGTCGACATGAATACAATTCGTCCTTGCGGTTGTAAGGGCG
TTCGCACCTGCTTGAGCTGCGAACAGGACTTTCATATAGCGAAGACCTCG
CTACGGGAACAATTCCAGCAACTGGAAGCATGGTCCTACTGTATCCAGTG
CGACCTTCTGCAGCGCGGTTGGGATACCAATCATGTCCAAAAGGATCATG
AAAATCACAAAAAAGATGAGGGCCTCCCACTGCCGGGCATCCTGGTGCAG
GAGGAATTCCTTAGCGTTGATGAGGGCGCCCAACTTATAGCCGACTTGGA
TGACCTGCCATGGGACATCTCGCAGAGCGGCAGGCGAAAACAGAACTTCG
GACCCAAGACCAACTTTAAAAAGCGCAAACTGCGGCTGGGATCCTTTGCC
GGATTCCCCAGGACAACGGAATATGTGCAACGGCGCTTCGAAGACGTTCC
CCTGCTTCGTGGCTTTCAGACCATCGAACAGTGCTCCCTGGAGTACGAGC
CCAGCAAAGGAGCCAGCATAGATCCGCACGTGGACGATTGCTGGATCTGG
GGCGAGCGTGTGGTCACTGTCAACTGCCTCGGCGACTCAGTGCTCACTTT
GACGCCCTACGAAGTTCAACAATCGGGCAAGTACAACTTGGACTTGGTTG
CCAGCTACGAAGATGAACTATTGGCGCCTCTACTGACAGATGACCAACTT
GCAACTTTTGAGGGAAAGGTGCTGCGCATACCTATGCCAAACCTCTCCTT
GATAGTTTTGTATGGGCCAGCGAGGTACCAGTTTGAGCATTCTGTACTAC
GCGAGGATGTCCAAGAGCGCCGCGTTTGTGTAGCCTACCGGGAGTTTACG
CCCATGTACATCAATGGCGTAGACATCCAAAAGGGAGATCCTG
BS06229.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-PA | 915 | CG4036-RA | 1..877 | 17..893 | 4385 | 100 | Plus |
CG18854-PA | 282 | CG18854-RA | 81..272 | 574..765 | 660 | 93.7 | Plus |
CG18854-PC | 363 | CG18854-RC | 162..353 | 574..765 | 660 | 93.7 | Plus |
CG18854-PB | 282 | CG18854-RB | 81..272 | 574..765 | 660 | 93.7 | Plus |
CG18854-PA | 282 | CG18854-RA | 18..68 | 34..84 | 205 | 96 | Plus |
CG18854-PC | 363 | CG18854-RC | 99..149 | 34..84 | 205 | 96 | Plus |
CG18854-PB | 282 | CG18854-RB | 18..68 | 34..84 | 205 | 96 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:26:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-RB | 950 | CG4036-RB | 22..898 | 17..893 | 4385 | 100 | Plus |
CG4036-RA | 1002 | CG4036-RA | 74..950 | 17..893 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:26:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9790970..9791694 | 17..741 | 3625 | 100 | Plus |
2L | 23513712 | 2L | 9791755..9791906 | 742..893 | 760 | 100 | Plus |
2L | 23513712 | 2L | 9789367..9789534 | 741..574 | 705 | 94.6 | Minus |
2L | 23513712 | 2L | 9789536..9789614 | 95..17 | 275 | 89.9 | Minus |
Blast to na_te.dros performed on 2015-02-10 20:26:20 has no hits.
BS06229.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:36 Download gff for
BS06229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:30 Download gff for
BS06229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:40:12 Download gff for
BS06229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 69..950 | 8..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:02 Download gff for
BS06229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 69..950 | 8..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:02 Download gff for
BS06229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9790969..9791694 | 14..741 | 99 | -> | Plus |
2L | 9791755..9791906 | 742..893 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:40:12 Download gff for
BS06229.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9790969..9791694 | 14..741 | 99 | -> | Plus |
arm_2L | 9791755..9791906 | 742..893 | 100 | | Plus |
BS06229.complete Sequence
947 bp (947 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635403
> BS06229.complete
GAAGTTATCAGTCGACATGAATACAATTCGTCCTTGCGGTTGTAAGGGCG
TTCGCACCTGCTTGAGCTGCGAACAGGACTTTCATATAGCGAAGACCTCG
CTACGGGAACAATTCCAGCAACTGGAAGCATGGTCCTACTGTATCCAGTG
CGACCTTCTGCAGCGCGGTTGGGATACCAATCATGTCCAAAAGGATCATG
AAAATCACAAAAAAGATGAGGGCCTCCCACTGCCGGGCATCCTGGTGCAG
GAGGAATTCCTTAGCGTTGATGAGGGCGCCCAACTTATAGCCGACTTGGA
TGACCTGCCATGGGACATCTCGCAGAGCGGCAGGCGAAAACAGAACTTCG
GACCCAAGACCAACTTTAAAAAGCGCAAACTGCGGCTGGGATCCTTTGCC
GGATTCCCCAGGACAACGGAATATGTGCAACGGCGCTTCGAAGACGTTCC
CCTGCTTCGTGGCTTTCAGACCATCGAACAGTGCTCCCTGGAGTACGAGC
CCAGCAAAGGAGCCAGCATAGATCCGCACGTGGACGATTGCTGGATCTGG
GGCGAGCGTGTGGTCACTGTCAACTGCCTCGGCGACTCAGTGCTCACTTT
GACGCCCTACGAAGTTCAACAATCGGGCAAGTACAACTTGGACTTGGTTG
CCAGCTACGAAGATGAACTATTGGCGCCTCTACTGACAGATGACCAACTT
GCAACTTTTGAGGGAAAGGTGCTGCGCATACCTATGCCAAACCTCTCCTT
GATAGTTTTGTATGGGCCAGCGAGGTACCAGTTTGAGCATTCTGTACTAC
GCGAGGATGTCCAAGAGCGCCGCGTTTGTGTAGCCTACCGGGAGTTTACG
CCCATGTACATCAATGGCGTAGACATCCAAAAGGGAGATCCTGTCCGAGA
AAAGTCTCAGATATTCTGGCAAATAAACTAGAAGCTTTCTAGACCAT
BS06229.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:09:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-RB | 915 | CG4036-PB | 1..915 | 17..931 | 4575 | 100 | Plus |
CG4036-RA | 915 | CG4036-PA | 1..915 | 17..931 | 4575 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:09:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-RB | 950 | CG4036-RB | 22..936 | 17..931 | 4575 | 100 | Plus |
CG4036-RA | 1002 | CG4036-RA | 74..988 | 17..931 | 4575 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:09:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9790970..9791694 | 17..741 | 3625 | 100 | Plus |
2L | 23513712 | 2L | 9791755..9791944 | 742..931 | 950 | 100 | Plus |
2L | 23513712 | 2L | 9789367..9789534 | 741..574 | 705 | 94.6 | Minus |
2L | 23513712 | 2L | 9789536..9789614 | 95..17 | 275 | 89.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:09:21 has no hits.
BS06229.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:14 Download gff for
BS06229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 1..915 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:49 Download gff for
BS06229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 14..933 | 8..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:14 Download gff for
BS06229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 74..988 | 17..931 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:14 Download gff for
BS06229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 14..933 | 8..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:05 Download gff for
BS06229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4036-RA | 74..988 | 17..931 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:05 Download gff for
BS06229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9790970..9791694 | 17..741 | 100 | -> | Plus |
2L | 9791755..9791944 | 742..931 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:14 Download gff for
BS06229.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9790970..9791694 | 17..741 | 100 | -> | Plus |
arm_2L | 9791755..9791944 | 742..931 | 100 | | Plus |
BS06229.pep Sequence
Translation from 16 to 930
> BS06229.pep
MNTIRPCGCKGVRTCLSCEQDFHIAKTSLREQFQQLEAWSYCIQCDLLQR
GWDTNHVQKDHENHKKDEGLPLPGILVQEEFLSVDEGAQLIADLDDLPWD
ISQSGRRKQNFGPKTNFKKRKLRLGSFAGFPRTTEYVQRRFEDVPLLRGF
QTIEQCSLEYEPSKGASIDPHVDDCWIWGERVVTVNCLGDSVLTLTPYEV
QQSGKYNLDLVASYEDELLAPLLTDDQLATFEGKVLRIPMPNLSLIVLYG
PARYQFEHSVLREDVQERRVCVAYREFTPMYINGVDIQKGDPVREKSQIF
WQIN*
BS06229.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4036-PB | 304 | CG4036-PB | 1..304 | 1..304 | 1635 | 100 | Plus |
CG4036-PA | 304 | CG4036-PA | 1..304 | 1..304 | 1635 | 100 | Plus |