Clone BS06229 Report

Search the DGRC for BS06229

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG4036-RA
Protein status:BS06229.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06229.3prime Sequence

938 bp (788 high quality bases) assembled on 2005-12-03

> BS06229.3prime
ATGGTCTAGAAAGCTTCTAGTTTATTTGCCAGAATATCTGAGACTTTTCT
CGGACAGGATCTCCCTTTTGGATGTCTACGCCATTGATGTACATGGGCGT
AAACTCCCGGTAGGCTACACAAACGCGGCGCTCTTGGACATCCTCGCGTA
GTACAGAATGCTCAAACTGGTACCTCGCTGGCCCATACAAAACTATCAAG
GAGAGGTTTGGCATAGGTATGCGCAGCACCTTTCCCTCAAAAGTTGCAAG
TTGGTCATCTGTCAGTAGAGGCGCCAATAGTTCATCTTCGTAGCTGGCAA
CCAAGTCCAAGTTGTACTTGCCCGATTGTTGAACTTCGTAGGGCGTCAAA
GTGAGCACTGAGTCGCCGAGGCAGTTGACAGTGACCACACGCTCGCCCCA
GATCCAGCAATCGTCCACGTGCGGATCTATGCTGGCTCCTTTGCTGGGCT
CGTACTCCAGGGAGCACTGTTCGATGGTCTGAAAGCCACGAAGCAGGGGA
ACGTCTTCGAAGCGCCGTTGCACATATTCCGTTGTCCTGGGGAATCCGGC
AAAGGATCCCAGCCGCAGTTTGCGCTTTTTAAAGTTGGTCTTGGGTCCGA
AGTTCTGTTTTCGCCTGCCGCTCTGCGAGATGTCCCATGGCAGGTCATCC
AAGTCGGCTATAAGTTGGGCGCCCTCATCAACGCTAAGGAATTCCTCCTG
CACCAGGATGCCCGGCAGTGGGAGGCCCTCATCTTTTTTGTGATTTTCAT
GATCCTTTTGGACATGATTGGTATCCCAACCGCGCTGCAGAAGGTCGCAC
TGGATACAGTAGGACCATGCTTCCAGTTGCTGGAATTGTTCCCGTAGCGA
GGTCTTCGCTATATGAAAGTCCTGTTCGCAGCTCAAGCAGGTGCGAACGC
CCCTACNACCGCAAGGACGAATTGTATTCATGTCGACT

BS06229.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-PA 915 CG4036-RA 1..915 931..17 4531 99.7 Minus
CG18854-PA 282 CG18854-RA 81..272 374..183 660 93.7 Minus
CG18854-PC 363 CG18854-RC 162..353 374..183 660 93.7 Minus
CG18854-PB 282 CG18854-RB 81..272 374..183 660 93.7 Minus
CG18854-PA 282 CG18854-RA 18..68 914..864 186 94.1 Minus
CG18854-PC 363 CG18854-RC 99..149 914..864 186 94.1 Minus
CG18854-PB 282 CG18854-RB 18..68 914..864 186 94.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-RB 950 CG4036-RB 22..936 931..17 4549 99.8 Minus
CG4036-RA 1002 CG4036-RA 74..988 931..17 4549 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:59:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9790970..9791694 931..207 3599 99.7 Minus
2L 23513712 2L 9791755..9791944 206..17 950 100 Minus
2L 23513712 2L 9789367..9789534 207..374 705 94.6 Plus
2L 23513712 2L 9789536..9789614 853..931 264 88.6 Plus
Blast to na_te.dros performed on 2015-01-31 16:59:33 has no hits.

BS06229.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:35 Download gff for BS06229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-PA 1..915 17..931 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:29 Download gff for BS06229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-PA 1..915 17..931 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:29:13 Download gff for BS06229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 71..988 17..938 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:46:20 Download gff for BS06229.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 71..988 17..938 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:46:20 Download gff for BS06229.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9790967..9791694 207..938 99 -> Minus
2L 9791755..9791944 17..206 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:29:13 Download gff for BS06229.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9790967..9791694 207..938 99 -> Minus
arm_2L 9791755..9791944 17..206 100   Minus

BS06229.5prime Sequence

893 bp (869 high quality bases) assembled on 2005-12-03

> BS06229.5prime
GAAGTTATCAGTCGACATGAATACAATTCGTCCTTGCGGTTGTAAGGGCG
TTCGCACCTGCTTGAGCTGCGAACAGGACTTTCATATAGCGAAGACCTCG
CTACGGGAACAATTCCAGCAACTGGAAGCATGGTCCTACTGTATCCAGTG
CGACCTTCTGCAGCGCGGTTGGGATACCAATCATGTCCAAAAGGATCATG
AAAATCACAAAAAAGATGAGGGCCTCCCACTGCCGGGCATCCTGGTGCAG
GAGGAATTCCTTAGCGTTGATGAGGGCGCCCAACTTATAGCCGACTTGGA
TGACCTGCCATGGGACATCTCGCAGAGCGGCAGGCGAAAACAGAACTTCG
GACCCAAGACCAACTTTAAAAAGCGCAAACTGCGGCTGGGATCCTTTGCC
GGATTCCCCAGGACAACGGAATATGTGCAACGGCGCTTCGAAGACGTTCC
CCTGCTTCGTGGCTTTCAGACCATCGAACAGTGCTCCCTGGAGTACGAGC
CCAGCAAAGGAGCCAGCATAGATCCGCACGTGGACGATTGCTGGATCTGG
GGCGAGCGTGTGGTCACTGTCAACTGCCTCGGCGACTCAGTGCTCACTTT
GACGCCCTACGAAGTTCAACAATCGGGCAAGTACAACTTGGACTTGGTTG
CCAGCTACGAAGATGAACTATTGGCGCCTCTACTGACAGATGACCAACTT
GCAACTTTTGAGGGAAAGGTGCTGCGCATACCTATGCCAAACCTCTCCTT
GATAGTTTTGTATGGGCCAGCGAGGTACCAGTTTGAGCATTCTGTACTAC
GCGAGGATGTCCAAGAGCGCCGCGTTTGTGTAGCCTACCGGGAGTTTACG
CCCATGTACATCAATGGCGTAGACATCCAAAAGGGAGATCCTG

BS06229.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-PA 915 CG4036-RA 1..877 17..893 4385 100 Plus
CG18854-PA 282 CG18854-RA 81..272 574..765 660 93.7 Plus
CG18854-PC 363 CG18854-RC 162..353 574..765 660 93.7 Plus
CG18854-PB 282 CG18854-RB 81..272 574..765 660 93.7 Plus
CG18854-PA 282 CG18854-RA 18..68 34..84 205 96 Plus
CG18854-PC 363 CG18854-RC 99..149 34..84 205 96 Plus
CG18854-PB 282 CG18854-RB 18..68 34..84 205 96 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:26:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-RB 950 CG4036-RB 22..898 17..893 4385 100 Plus
CG4036-RA 1002 CG4036-RA 74..950 17..893 4385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:26:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9790970..9791694 17..741 3625 100 Plus
2L 23513712 2L 9791755..9791906 742..893 760 100 Plus
2L 23513712 2L 9789367..9789534 741..574 705 94.6 Minus
2L 23513712 2L 9789536..9789614 95..17 275 89.9 Minus
Blast to na_te.dros performed on 2015-02-10 20:26:20 has no hits.

BS06229.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:36 Download gff for BS06229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-PA 1..877 17..893 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:30 Download gff for BS06229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-PA 1..877 17..893 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:40:12 Download gff for BS06229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 69..950 8..893 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:32:02 Download gff for BS06229.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 69..950 8..893 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:32:02 Download gff for BS06229.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9790969..9791694 14..741 99 -> Plus
2L 9791755..9791906 742..893 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:40:12 Download gff for BS06229.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9790969..9791694 14..741 99 -> Plus
arm_2L 9791755..9791906 742..893 100   Plus

BS06229.complete Sequence

947 bp (947 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635403

> BS06229.complete
GAAGTTATCAGTCGACATGAATACAATTCGTCCTTGCGGTTGTAAGGGCG
TTCGCACCTGCTTGAGCTGCGAACAGGACTTTCATATAGCGAAGACCTCG
CTACGGGAACAATTCCAGCAACTGGAAGCATGGTCCTACTGTATCCAGTG
CGACCTTCTGCAGCGCGGTTGGGATACCAATCATGTCCAAAAGGATCATG
AAAATCACAAAAAAGATGAGGGCCTCCCACTGCCGGGCATCCTGGTGCAG
GAGGAATTCCTTAGCGTTGATGAGGGCGCCCAACTTATAGCCGACTTGGA
TGACCTGCCATGGGACATCTCGCAGAGCGGCAGGCGAAAACAGAACTTCG
GACCCAAGACCAACTTTAAAAAGCGCAAACTGCGGCTGGGATCCTTTGCC
GGATTCCCCAGGACAACGGAATATGTGCAACGGCGCTTCGAAGACGTTCC
CCTGCTTCGTGGCTTTCAGACCATCGAACAGTGCTCCCTGGAGTACGAGC
CCAGCAAAGGAGCCAGCATAGATCCGCACGTGGACGATTGCTGGATCTGG
GGCGAGCGTGTGGTCACTGTCAACTGCCTCGGCGACTCAGTGCTCACTTT
GACGCCCTACGAAGTTCAACAATCGGGCAAGTACAACTTGGACTTGGTTG
CCAGCTACGAAGATGAACTATTGGCGCCTCTACTGACAGATGACCAACTT
GCAACTTTTGAGGGAAAGGTGCTGCGCATACCTATGCCAAACCTCTCCTT
GATAGTTTTGTATGGGCCAGCGAGGTACCAGTTTGAGCATTCTGTACTAC
GCGAGGATGTCCAAGAGCGCCGCGTTTGTGTAGCCTACCGGGAGTTTACG
CCCATGTACATCAATGGCGTAGACATCCAAAAGGGAGATCCTGTCCGAGA
AAAGTCTCAGATATTCTGGCAAATAAACTAGAAGCTTTCTAGACCAT

BS06229.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:09:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-RB 915 CG4036-PB 1..915 17..931 4575 100 Plus
CG4036-RA 915 CG4036-PA 1..915 17..931 4575 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:09:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-RB 950 CG4036-RB 22..936 17..931 4575 100 Plus
CG4036-RA 1002 CG4036-RA 74..988 17..931 4575 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:09:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9790970..9791694 17..741 3625 100 Plus
2L 23513712 2L 9791755..9791944 742..931 950 100 Plus
2L 23513712 2L 9789367..9789534 741..574 705 94.6 Minus
2L 23513712 2L 9789536..9789614 95..17 275 89.9 Minus
Blast to na_te.dros performed on 2014-11-27 13:09:21 has no hits.

BS06229.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:14 Download gff for BS06229.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 1..915 17..931 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:49 Download gff for BS06229.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 14..933 8..931 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:27:14 Download gff for BS06229.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 74..988 17..931 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:14 Download gff for BS06229.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 14..933 8..931 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:12:05 Download gff for BS06229.complete
Subject Subject Range Query Range Percent Splice Strand
CG4036-RA 74..988 17..931 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:12:05 Download gff for BS06229.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9790970..9791694 17..741 100 -> Plus
2L 9791755..9791944 742..931 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:27:14 Download gff for BS06229.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9790970..9791694 17..741 100 -> Plus
arm_2L 9791755..9791944 742..931 100   Plus

BS06229.pep Sequence

Translation from 16 to 930

> BS06229.pep
MNTIRPCGCKGVRTCLSCEQDFHIAKTSLREQFQQLEAWSYCIQCDLLQR
GWDTNHVQKDHENHKKDEGLPLPGILVQEEFLSVDEGAQLIADLDDLPWD
ISQSGRRKQNFGPKTNFKKRKLRLGSFAGFPRTTEYVQRRFEDVPLLRGF
QTIEQCSLEYEPSKGASIDPHVDDCWIWGERVVTVNCLGDSVLTLTPYEV
QQSGKYNLDLVASYEDELLAPLLTDDQLATFEGKVLRIPMPNLSLIVLYG
PARYQFEHSVLREDVQERRVCVAYREFTPMYINGVDIQKGDPVREKSQIF
WQIN*

BS06229.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4036-PB 304 CG4036-PB 1..304 1..304 1635 100 Plus
CG4036-PA 304 CG4036-PA 1..304 1..304 1635 100 Plus