Clone Sequence Records
BS06230.3prime Sequence
901 bp (821 high quality bases) assembled on 2005-12-03
> BS06230.3prime
ATGGTCTAGAAAGCTTCTACTTCCAGTTTGAACTGGATCCTGCCCAGCCG
CCTGAGGCCGGCGCTGAGTAGCTGTATCCGTCGCCACCGCCGCCGGAAGA
CCCGCCGTAGGAGCCACCGCTGCCTGAAGCAGCGGCTGCAGCCACCACTT
GTGTATCATAGCTGGATCCGCCGCCACTGCTATAGCCACCGCCATGTCCA
CTGCTGTATCCTCCAGAGCTGTAGGACGAGCCGCTGCTGTAGGAGGAGGC
TCCGCTGTAAGAGGATCCACCAGAATATCCACCATCGTAGCCCCCGGAGG
AGCCACCACTGTATCCACCGGAGGATCCGCCGCCGTATCCGCCGGAAGAG
CCATGTGAATCTCCAGCCGCAGCAGCAGCCACAATCACCTGGGTGTCATG
ACCTCCTCCGCTGTGACCGCCACCGCTGTAGCCGCCGTATCCTCCGCTGC
CACCATGATCAGAGGAGTCTGAGCTGGCGGCGATGGCTGCAATGTTGGCG
ATGGCATGGCCACCATAACCTCCGCCGTGTCCGCCGCTGCCTCCATGTCC
GCCATGTCCGTGATCGGAGGACGAGCCAGCAGCAGCAGCGATGGCAGCAA
TCTTGGCATCATCATGACCGGAACTATATCCGCCGGAGCTGTATCCGTGG
CCACCTCCACCGCCTCCGCCACCCCCGGAACTGTATCCGTGGTTCTCGGT
GATAACAGCATAGGTGTTCACATGACCACCGCCTCCTCCACCGCCGCTGT
ATCCGCCATCGTGGGAGTGAATCTCATAGCCTCCACCTCCATGGCCGCCA
AAATCACCGCCTCCGTGGCCGCCAAAATCACCGCCTCCGTGGCCGCCGTG
ATCCCCACCGCTCTCTGGCAGGTGAATACGGATGTGGACATGCTCTCGTC
C
BS06230.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9083-PA | 1029 | CG9083-RA | 145..1029 | 901..17 | 4425 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:13:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tpc2-RB | 2769 | CG2857-RB | 1307..2192 | 16..901 | 4430 | 100 | Plus |
| CG9083-RB | 1165 | CG9083-RB | 139..1024 | 901..16 | 4430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24898479..24899364 | 901..16 | 4430 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 19:13:53 has no hits.
BS06230.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:37 Download gff for
BS06230.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-PA | 145..1029 | 17..901 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:32 Download gff for
BS06230.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-PA | 145..1029 | 17..901 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:15:57 Download gff for
BS06230.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tpc2-RB | 1307..2192 | 16..901 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:15 Download gff for
BS06230.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-RB | 139..1024 | 16..901 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:15 Download gff for
BS06230.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24898479..24899364 | 16..901 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:15:57 Download gff for
BS06230.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20786002..20786887 | 16..901 | 100 | | Minus |
BS06230.5prime Sequence
956 bp (885 high quality bases) assembled on 2005-12-03
> BS06230.5prime
GAAGTTATCAGTCGACATGTTTGCCGAATCATTTCCAGTCGGTCCAGAGG
CGAGCAATCATTCGAGAGTCCTTCGTAACGAATCCAGAGAAATGGCAGCC
CGTTTCATAATCAGTGCGCTTCTGCTGGCTAGCCCAGCGGTATGGGGAAA
GCCCACCTTCGGACGAGAGCATGTCCACATCCGTATTCACCTGCCAGAGA
GCGGTGGGGATCACGGCGGCCACGGAGGCGGTGATTTTGGCGGCCACGGA
GGCGGTGATTTTGGCGGCCATGGAGGTGGAGGCTATGAGATTCACTCCCA
CGATGGCGGATACAGCGGCGGTGGAGGAGGCGGTGGTCATGTGAACACCT
ATGCTGTTATCACCGAGAACCACGGATACAGTTCCGGGGGTGGCGGAGGC
GGTGGAGGTGGCCACGGATACAGCTCCGGCGGATATAGTTCCGGTCATGA
TGATGCCAAGATTGCTGCCATCGCTGCTGCTGCTGGCTCGTCCTCCGATC
ACGGACATGGCGGACATGGAGGCAGCGGCGGACACGGCGGAGGTTATGGT
GGCCATGCCATCGCCAACATTGCAGCCATCGCCGCCAGCTCAGACTCCTC
TGATCATGGTGGCAGCGGAGGATACGGCGGCTACAGCGGTGGCGGTCACA
GCGGAGGAGGTCATGACACCCAGGTGATTGTGGCTGCTGCTGCGGCTGGA
GATTCACATGGCTCTTCCGGCGGATACGGCGGCGGATCCTCCGGTGGATA
CAGTGGTGGCTCCTCCGGGGGCTACGATGGTGGATATTCTGGTGGATCCT
CTTACAGCGGAGCCTCCTCCTACAGCAGCGGCTCGTCCTACAGCTCTGGA
GGATACAGCAGTGGACATGGCGGTGGCTATAGCAGTGGCGGCGGATCCAG
CTATGATACACAAGTGGTGGCTGCAGCCGCTGCTTCAGGCAGCGGTGGCT
CCTACG
BS06230.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9083-PA | 1029 | CG9083-RA | 1..940 | 17..956 | 4700 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:59:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9083-RB | 1165 | CG9083-RB | 1..934 | 23..956 | 4670 | 100 | Plus |
| Tpc2-RB | 2769 | CG2857-RB | 1397..2243 | 956..110 | 4235 | 100 | Minus |
| Tpc2-RB | 2769 | CG2857-RB | 2312..2405 | 109..16 | 470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:59:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24898428..24899274 | 110..956 | 4235 | 100 | Plus |
| 2R | 25286936 | 2R | 24898266..24898359 | 16..109 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:59:54 has no hits.
BS06230.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:38 Download gff for
BS06230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-PA | 1..940 | 17..956 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:33 Download gff for
BS06230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-PA | 1..940 | 17..956 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:33:19 Download gff for
BS06230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-RB | 1..934 | 23..956 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:26:55 Download gff for
BS06230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-RB | 1..934 | 23..956 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:26:55 Download gff for
BS06230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24898266..24898359 | 16..109 | 100 | -> | Plus |
| 2R | 24898428..24899274 | 110..956 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:33:19 Download gff for
BS06230.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20785789..20785882 | 16..109 | 100 | -> | Plus |
| arm_2R | 20785951..20786797 | 110..956 | 100 | | Plus |
BS06230.complete Sequence
1061 bp (1061 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635404
> BS06230.complete
GAAGTTATCAGTCGACATGTTTGCCGAATCATTTCCAGTCGGTCCAGAGG
CGAGCAATCATTCGAGAGTCCTTCGTAACGAATCCAGAGAAATGGCAGCC
CGTTTCATAATCAGTGCGCTTCTGCTGGCTAGCCCAGCGGTATGGGGAAA
GCCCACCTTCGGACGAGAGCATGTCCACATCCGTATTCACCTGCCAGAGA
GCGGTGGGGATCACGGCGGCCACGGAGGCGGTGATTTTGGCGGCCACGGA
GGCGGTGATTTTGGCGGCCATGGAGGTGGAGGCTATGAGATTCACTCCCA
CGATGGCGGATACAGCGGCGGTGGAGGAGGCGGTGGTCATGTGAACACCT
ATGCTGTTATCACCGAGAACCACGGATACAGTTCCGGGGGTGGCGGAGGC
GGTGGAGGTGGCCACGGATACAGCTCCGGCGGATATAGTTCCGGTCATGA
TGATGCCAAGATTGCTGCCATCGCTGCTGCTGCTGGCTCGTCCTCCGATC
ACGGACATGGCGGACATGGAGGCAGCGGCGGACACGGCGGAGGTTATGGT
GGCCATGCCATCGCCAACATTGCAGCCATCGCCGCCAGCTCAGACTCCTC
TGATCATGGTGGCAGCGGAGGATACGGCGGCTACAGCGGTGGCGGTCACA
GCGGAGGAGGTCATGACACCCAGGTGATTGTGGCTGCTGCTGCGGCTGGA
GATTCACATGGCTCTTCCGGCGGATACGGCGGCGGATCCTCCGGTGGATA
CAGTGGTGGCTCCTCCGGGGGCTACGATGGTGGATATTCTGGTGGATCCT
CTTACAGCGGAGCCTCCTCCTACAGCAGCGGCTCGTCCTACAGCTCTGGA
GGATACAGCAGTGGACATGGCGGTGGCTATAGCAGTGGCGGCGGATCCAG
CTATGATACACAAGTGGTGGCTGCAGCCGCTGCTTCAGGCAGCGGTGGCT
CCTACGGCGGGTCTTCCGGCGGCGGTGGCGACGGATACAGCTACTCAGCG
CCGGCCTCAGGCGGCTGGGCAGGATCCAGTTCAAACTGGAAGTAGAAGCT
TTCTAGACCAT
BS06230.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:09:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9083-RB | 954 | CG9083-PB | 1..954 | 92..1045 | 4770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9083-RB | 1165 | CG9083-RB | 1..1024 | 23..1046 | 5120 | 100 | Plus |
| Tpc2-RB | 2769 | CG2857-RB | 1307..2243 | 1046..110 | 4685 | 100 | Minus |
| Tpc2-RB | 2769 | CG2857-RB | 2312..2405 | 109..16 | 470 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 24898428..24899364 | 110..1046 | 4685 | 100 | Plus |
| 2R | 25286936 | 2R | 24898266..24898359 | 16..109 | 470 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 15:09:56 has no hits.
BS06230.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:15 Download gff for
BS06230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-RB | 1..954 | 92..1045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:51 Download gff for
BS06230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-RB | 1..1019 | 28..1046 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:48:41 Download gff for
BS06230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-RB | 1..1023 | 23..1045 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:15 Download gff for
BS06230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-RB | 1..1019 | 28..1046 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:01:21 Download gff for
BS06230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9083-RB | 1..1023 | 23..1045 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:01:21 Download gff for
BS06230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 24898273..24898359 | 23..109 | 100 | -> | Plus |
| 2R | 24898428..24899363 | 110..1045 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:48:41 Download gff for
BS06230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 20785796..20785882 | 23..109 | 100 | -> | Plus |
| arm_2R | 20785951..20786886 | 110..1045 | 100 | | Plus |
BS06230.pep Sequence
Translation from 16 to 1044
> BS06230.pep
MFAESFPVGPEASNHSRVLRNESREMAARFIISALLLASPAVWGKPTFGR
EHVHIRIHLPESGGDHGGHGGGDFGGHGGGDFGGHGGGGYEIHSHDGGYS
GGGGGGGHVNTYAVITENHGYSSGGGGGGGGGHGYSSGGYSSGHDDAKIA
AIAAAAGSSSDHGHGGHGGSGGHGGGYGGHAIANIAAIAASSDSSDHGGS
GGYGGYSGGGHSGGGHDTQVIVAAAAAGDSHGSSGGYGGGSSGGYSGGSS
GGYDGGYSGGSSYSGASSYSSGSSYSSGGYSSGHGGGYSSGGGSSYDTQV
VAAAAASGSGGSYGGSSGGGGDGYSYSAPASGGWAGSSSNWK*
BS06230.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9083-PB | 317 | CG9083-PB | 1..317 | 26..342 | 1739 | 100 | Plus |
| CG17108-PA | 342 | CG17108-PA | 46..338 | 63..336 | 403 | 37.9 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 272..536 | 62..336 | 388 | 38.1 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 230..493 | 57..336 | 386 | 37.3 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 272..547 | 62..336 | 378 | 36.2 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 235..471 | 63..336 | 377 | 36.8 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 314..590 | 63..340 | 374 | 37.3 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 230..504 | 57..336 | 371 | 35.9 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 314..587 | 63..341 | 368 | 35.9 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 345..601 | 63..340 | 368 | 37.4 | Plus |
| CG17108-PA | 342 | CG17108-PA | 15..268 | 62..342 | 354 | 37.1 | Plus |
| CG17108-PA | 342 | CG17108-PA | 101..340 | 62..288 | 353 | 42.1 | Plus |
| CG12523-PB | 250 | CG12523-PB | 17..250 | 80..334 | 352 | 41.1 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 46..340 | 63..336 | 293 | 32.4 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 46..340 | 63..336 | 293 | 32.4 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 66..408 | 63..336 | 290 | 30.4 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 66..408 | 63..336 | 290 | 30.4 | Plus |
| CG17108-PA | 342 | CG17108-PA | 6..198 | 149..340 | 267 | 35.8 | Plus |
| CG17108-PA | 342 | CG17108-PA | 172..342 | 63..239 | 250 | 39.4 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 371..600 | 60..270 | 237 | 36.2 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 410..611 | 63..270 | 234 | 36.4 | Plus |
| CG17108-PA | 342 | CG17108-PA | 239..342 | 60..205 | 207 | 38.4 | Plus |
| Cpr47Ef-PD | 601 | CG13214-PD | 28..285 | 60..341 | 204 | 27.4 | Plus |
| Cpr47Ef-PC | 612 | CG13214-PC | 28..285 | 60..341 | 204 | 27.4 | Plus |
