Clone BS06231 Report

Search the DGRC for BS06231

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:31
Vector:pDNR-Dual
Associated Gene/TranscriptCG8321-RA
Protein status:BS06231.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06231.3prime Sequence

654 bp (653 high quality bases) assembled on 2005-12-03

> BS06231.3prime
ATGGTCTAGAAAGCTTCTACGAGTACAAGTCGAAGTACATGAAGACCGTG
ACCAGAAATCCGCAGAACAGGGCGCACAAGTAGCCCAAGTGCATCGAGGC
AGTCTTCTCCTCGCGGAAACGTTTCTTGGAACGCGGCGTAAAGGGCGAGG
GGGGATTTACGCCGGGCACCGCGCTGTCCAAGTACACGATTCCGTACGCG
AAAGCTGCCACTAGAAGGCCACACAGCAGGGGACTCAGCCTGGAGCCCAG
CTGGTGCCTGGTGGCCCACACCAAGGTCTCGTTCCACCTACTCTGCACCT
GGTGGCTCAGCACCTGGATGGAATCGCCCGTGATGTATGGCATCGTTAAG
ATGACGCTTTTGTAGCCAATGATAAGAGTCCCAAAGAGAAGGGCCACCTT
TTTGATCAGCGGATCGAGGGCGGTCACCACTCCCACTCGCCCCTTTTCCG
AGGGTTTAGCAACACCTACGTAGTGCTCAAGTTTCGGATGCGAGGTCTTC
GGCGTGGAGGTGTAGATCCGTCCGTTCGGTTGCCCGTTTTTTTTACTTCT
GACTGCCGTTGAGAAAATCCCATTGGTTTTGTTTTTCTCCTGCTGGCGAT
GCGTGACGTCACAGCCGACTTCGGCTGGTTCCACCTGCATGTCGACTGAT
AACT

BS06231.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8321-PA 624 CG8321-RA 1..624 640..17 3120 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:21:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG8321-RA 1195 CG8321-RA 186..815 644..15 3135 99.8 Minus
CG8321-RB 930 CG8321-RB 1..550 564..15 2750 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:21:27
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12034131..12034432 644..343 1495 99.7 Minus
2R 25286936 2R 12035488..12035710 342..120 1115 100 Minus
2R 25286936 2R 12035775..12035880 120..15 530 100 Minus
Blast to na_te.dros performed on 2015-02-03 13:21:31 has no hits.

BS06231.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:39 Download gff for BS06231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8321-PA 1..624 17..640 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:35 Download gff for BS06231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8321-PA 1..624 17..640 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:59:27 Download gff for BS06231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 184..822 7..648 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:48:43 Download gff for BS06231.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 184..822 7..648 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:48:43 Download gff for BS06231.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12034129..12034432 343..648 99 -> Minus
2R 12035488..12035710 120..342 100 -> Minus
2R 12035776..12035887 7..119 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:59:27 Download gff for BS06231.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7921634..7921937 343..648 99 -> Minus
arm_2R 7922993..7923215 120..342 100 -> Minus
arm_2R 7923281..7923392 7..119 96   Minus

BS06231.5prime Sequence

654 bp (653 high quality bases) assembled on 2005-12-03

> BS06231.5prime
GAAGTTATCAGTCGACATGCAGGTGGAACCAGCCGAAGTCGGCTGTGACG
TCACGCATCGCCAGCAGGAGAAAAACAAAACCAATGGGATTTTCTCAACG
GCAGTCAGAAGTAAAAAAAACGGGCAACCGAACGGACGGATCTACACCTC
CACGCCGAAGACCTCGCATCCGAAACTTGAGCACTACGTAGGTGTTGCTA
AACCCTCGGAAAAGGGGCGAGTGGGAGTGGTGACCGCCCTCGATCCGCTG
ATCAAAAAGGTGGCCCTTCTCTTTGGGACTCTTATCATTGGCTACAAAAG
CGTCATCTTAACGATGCCATACATCACGGGCGATTCCATCCAGGTGCTGA
GCCACCAGGTGCAGAGTAGGTGGAACGAGACCTTGGTGTGGGCCACCAGG
CACCAGCTGGGCTCCAGGCTGAGTCCCCTGCTGTGTGGCCTTCTAGTGGC
AGCTTTCGCGTACGGAATCGTGTACTTGGACAGCGCGGTGCCCGGCGTAA
ATCCCCCCTCGCCCTTTACGCCGCGTTCCAAGAAACGTTTCCGCGAGGAG
AAGACTGCCTCGATGCACTTGGGCTACTTGTGCGCCCTGTTCTGCGGATT
TCTGGTCACGGTCTTCATGTACTTCGACTTGTACTCGTAGAAGCTTTCTA
GACC

BS06231.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG8321-PA 624 CG8321-RA 1..624 17..640 3120 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG8321-RA 1195 CG8321-RA 186..815 13..642 3135 99.8 Plus
CG8321-RB 930 CG8321-RB 1..550 93..642 2750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12034131..12034432 13..314 1495 99.7 Plus
2R 25286936 2R 12035488..12035710 315..537 1115 100 Plus
2R 25286936 2R 12035775..12035880 537..642 530 100 Plus
Blast to na_te.dros performed on 2015-02-12 13:05:10 has no hits.

BS06231.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:41 Download gff for BS06231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8321-PA 1..624 17..640 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:36 Download gff for BS06231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8321-PA 1..624 17..640 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:07:30 Download gff for BS06231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 184..822 9..650 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:41:29 Download gff for BS06231.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 184..822 9..650 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:41:29 Download gff for BS06231.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12034129..12034432 9..314 99 -> Plus
2R 12035488..12035710 315..537 100 -> Plus
2R 12035776..12035887 538..650 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:07:30 Download gff for BS06231.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7921634..7921937 9..314 99 -> Plus
arm_2R 7922993..7923215 315..537 100 -> Plus
arm_2R 7923281..7923392 538..650 96   Plus

BS06231.complete Sequence

656 bp (656 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635405

> BS06231.complete
GAAGTTATCAGTCGACATGCAGGTGGAACCAGCCGAAGTCGGCTGTGACG
TCACGCATCGCCAGCAGGAGAAAAACAAAACCAATGGGATTTTCTCAACG
GCAGTCAGAAGTAAAAAAAACGGGCAACCGAACGGACGGATCTACACCTC
CACGCCGAAGACCTCGCATCCGAAACTTGAGCACTACGTAGGTGTTGCTA
AACCCTCGGAAAAGGGGCGAGTGGGAGTGGTGACCGCCCTCGATCCGCTG
ATCAAAAAGGTGGCCCTTCTCTTTGGGACTCTTATCATTGGCTACAAAAG
CGTCATCTTAACGATGCCATACATCACGGGCGATTCCATCCAGGTGCTGA
GCCACCAGGTGCAGAGTAGGTGGAACGAGACCTTGGTGTGGGCCACCAGG
CACCAGCTGGGCTCCAGGCTGAGTCCCCTGCTGTGTGGCCTTCTAGTGGC
AGCTTTCGCGTACGGAATCGTGTACTTGGACAGCGCGGTGCCCGGCGTAA
ATCCCCCCTCGCCCTTTACGCCGCGTTCCAAGAAACGTTTCCGCGAGGAG
AAGACTGCCTCGATGCACTTGGGCTACTTGTGCGCCCTGTTCTGCGGATT
TCTGGTCACGGTCTTCATGTACTTCGACTTGTACTCGTAGAAGCTTTCTA
GACCAT

BS06231.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG8321-RA 624 CG8321-PA 1..624 17..640 3120 100 Plus
CG8321-RB 327 CG8321-PB 1..327 314..640 1635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG8321-RA 1195 CG8321-RA 186..815 13..642 3135 99.8 Plus
CG8321-RB 930 CG8321-RB 1..550 93..642 2750 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12034131..12034432 13..314 1495 99.7 Plus
2R 25286936 2R 12035488..12035710 315..537 1115 100 Plus
2R 25286936 2R 12035775..12035880 537..642 530 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:56:40 has no hits.

BS06231.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:16 Download gff for BS06231.complete
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 1..624 17..640 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:52 Download gff for BS06231.complete
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 182..820 9..650 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:56 Download gff for BS06231.complete
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 190..813 17..640 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:16 Download gff for BS06231.complete
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 182..820 9..650 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:36 Download gff for BS06231.complete
Subject Subject Range Query Range Percent Splice Strand
CG8321-RA 190..813 17..640 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:36 Download gff for BS06231.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12034135..12034432 17..314 100 -> Plus
2R 12035488..12035710 315..537 100 -> Plus
2R 12035776..12035878 538..640 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:56 Download gff for BS06231.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7921640..7921937 17..314 100 -> Plus
arm_2R 7922993..7923215 315..537 100 -> Plus
arm_2R 7923281..7923383 538..640 100   Plus

BS06231.pep Sequence

Translation from 16 to 639

> BS06231.pep
MQVEPAEVGCDVTHRQQEKNKTNGIFSTAVRSKKNGQPNGRIYTSTPKTS
HPKLEHYVGVAKPSEKGRVGVVTALDPLIKKVALLFGTLIIGYKSVILTM
PYITGDSIQVLSHQVQSRWNETLVWATRHQLGSRLSPLLCGLLVAAFAYG
IVYLDSAVPGVNPPSPFTPRSKKRFREEKTASMHLGYLCALFCGFLVTVF
MYFDLYS*

BS06231.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG8321-PA 207 CG8321-PA 1..207 1..207 1083 100 Plus
CG8321-PB 108 CG8321-PB 1..108 100..207 575 100 Plus