Clone Sequence Records
BS06231.3prime Sequence
654 bp (653 high quality bases) assembled on 2005-12-03
> BS06231.3prime
ATGGTCTAGAAAGCTTCTACGAGTACAAGTCGAAGTACATGAAGACCGTG
ACCAGAAATCCGCAGAACAGGGCGCACAAGTAGCCCAAGTGCATCGAGGC
AGTCTTCTCCTCGCGGAAACGTTTCTTGGAACGCGGCGTAAAGGGCGAGG
GGGGATTTACGCCGGGCACCGCGCTGTCCAAGTACACGATTCCGTACGCG
AAAGCTGCCACTAGAAGGCCACACAGCAGGGGACTCAGCCTGGAGCCCAG
CTGGTGCCTGGTGGCCCACACCAAGGTCTCGTTCCACCTACTCTGCACCT
GGTGGCTCAGCACCTGGATGGAATCGCCCGTGATGTATGGCATCGTTAAG
ATGACGCTTTTGTAGCCAATGATAAGAGTCCCAAAGAGAAGGGCCACCTT
TTTGATCAGCGGATCGAGGGCGGTCACCACTCCCACTCGCCCCTTTTCCG
AGGGTTTAGCAACACCTACGTAGTGCTCAAGTTTCGGATGCGAGGTCTTC
GGCGTGGAGGTGTAGATCCGTCCGTTCGGTTGCCCGTTTTTTTTACTTCT
GACTGCCGTTGAGAAAATCCCATTGGTTTTGTTTTTCTCCTGCTGGCGAT
GCGTGACGTCACAGCCGACTTCGGCTGGTTCCACCTGCATGTCGACTGAT
AACT
BS06231.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8321-PA | 624 | CG8321-RA | 1..624 | 640..17 | 3120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:21:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8321-RA | 1195 | CG8321-RA | 186..815 | 644..15 | 3135 | 99.8 | Minus |
CG8321-RB | 930 | CG8321-RB | 1..550 | 564..15 | 2750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:21:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12034131..12034432 | 644..343 | 1495 | 99.7 | Minus |
2R | 25286936 | 2R | 12035488..12035710 | 342..120 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 12035775..12035880 | 120..15 | 530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:21:31 has no hits.
BS06231.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:39 Download gff for
BS06231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-PA | 1..624 | 17..640 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:35 Download gff for
BS06231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-PA | 1..624 | 17..640 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:59:27 Download gff for
BS06231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-RA | 184..822 | 7..648 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:48:43 Download gff for
BS06231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-RA | 184..822 | 7..648 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:48:43 Download gff for
BS06231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12034129..12034432 | 343..648 | 99 | -> | Minus |
2R | 12035488..12035710 | 120..342 | 100 | -> | Minus |
2R | 12035776..12035887 | 7..119 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:59:27 Download gff for
BS06231.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7921634..7921937 | 343..648 | 99 | -> | Minus |
arm_2R | 7922993..7923215 | 120..342 | 100 | -> | Minus |
arm_2R | 7923281..7923392 | 7..119 | 96 | | Minus |
BS06231.5prime Sequence
654 bp (653 high quality bases) assembled on 2005-12-03
> BS06231.5prime
GAAGTTATCAGTCGACATGCAGGTGGAACCAGCCGAAGTCGGCTGTGACG
TCACGCATCGCCAGCAGGAGAAAAACAAAACCAATGGGATTTTCTCAACG
GCAGTCAGAAGTAAAAAAAACGGGCAACCGAACGGACGGATCTACACCTC
CACGCCGAAGACCTCGCATCCGAAACTTGAGCACTACGTAGGTGTTGCTA
AACCCTCGGAAAAGGGGCGAGTGGGAGTGGTGACCGCCCTCGATCCGCTG
ATCAAAAAGGTGGCCCTTCTCTTTGGGACTCTTATCATTGGCTACAAAAG
CGTCATCTTAACGATGCCATACATCACGGGCGATTCCATCCAGGTGCTGA
GCCACCAGGTGCAGAGTAGGTGGAACGAGACCTTGGTGTGGGCCACCAGG
CACCAGCTGGGCTCCAGGCTGAGTCCCCTGCTGTGTGGCCTTCTAGTGGC
AGCTTTCGCGTACGGAATCGTGTACTTGGACAGCGCGGTGCCCGGCGTAA
ATCCCCCCTCGCCCTTTACGCCGCGTTCCAAGAAACGTTTCCGCGAGGAG
AAGACTGCCTCGATGCACTTGGGCTACTTGTGCGCCCTGTTCTGCGGATT
TCTGGTCACGGTCTTCATGTACTTCGACTTGTACTCGTAGAAGCTTTCTA
GACC
BS06231.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8321-PA | 624 | CG8321-RA | 1..624 | 17..640 | 3120 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8321-RA | 1195 | CG8321-RA | 186..815 | 13..642 | 3135 | 99.8 | Plus |
CG8321-RB | 930 | CG8321-RB | 1..550 | 93..642 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12034131..12034432 | 13..314 | 1495 | 99.7 | Plus |
2R | 25286936 | 2R | 12035488..12035710 | 315..537 | 1115 | 100 | Plus |
2R | 25286936 | 2R | 12035775..12035880 | 537..642 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 13:05:10 has no hits.
BS06231.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:41 Download gff for
BS06231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-PA | 1..624 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:36 Download gff for
BS06231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-PA | 1..624 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:07:30 Download gff for
BS06231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-RA | 184..822 | 9..650 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:41:29 Download gff for
BS06231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-RA | 184..822 | 9..650 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:41:29 Download gff for
BS06231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12034129..12034432 | 9..314 | 99 | -> | Plus |
2R | 12035488..12035710 | 315..537 | 100 | -> | Plus |
2R | 12035776..12035887 | 538..650 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:07:30 Download gff for
BS06231.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7921634..7921937 | 9..314 | 99 | -> | Plus |
arm_2R | 7922993..7923215 | 315..537 | 100 | -> | Plus |
arm_2R | 7923281..7923392 | 538..650 | 96 | | Plus |
BS06231.complete Sequence
656 bp (656 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635405
> BS06231.complete
GAAGTTATCAGTCGACATGCAGGTGGAACCAGCCGAAGTCGGCTGTGACG
TCACGCATCGCCAGCAGGAGAAAAACAAAACCAATGGGATTTTCTCAACG
GCAGTCAGAAGTAAAAAAAACGGGCAACCGAACGGACGGATCTACACCTC
CACGCCGAAGACCTCGCATCCGAAACTTGAGCACTACGTAGGTGTTGCTA
AACCCTCGGAAAAGGGGCGAGTGGGAGTGGTGACCGCCCTCGATCCGCTG
ATCAAAAAGGTGGCCCTTCTCTTTGGGACTCTTATCATTGGCTACAAAAG
CGTCATCTTAACGATGCCATACATCACGGGCGATTCCATCCAGGTGCTGA
GCCACCAGGTGCAGAGTAGGTGGAACGAGACCTTGGTGTGGGCCACCAGG
CACCAGCTGGGCTCCAGGCTGAGTCCCCTGCTGTGTGGCCTTCTAGTGGC
AGCTTTCGCGTACGGAATCGTGTACTTGGACAGCGCGGTGCCCGGCGTAA
ATCCCCCCTCGCCCTTTACGCCGCGTTCCAAGAAACGTTTCCGCGAGGAG
AAGACTGCCTCGATGCACTTGGGCTACTTGTGCGCCCTGTTCTGCGGATT
TCTGGTCACGGTCTTCATGTACTTCGACTTGTACTCGTAGAAGCTTTCTA
GACCAT
BS06231.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:56:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8321-RA | 624 | CG8321-PA | 1..624 | 17..640 | 3120 | 100 | Plus |
CG8321-RB | 327 | CG8321-PB | 1..327 | 314..640 | 1635 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:56:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8321-RA | 1195 | CG8321-RA | 186..815 | 13..642 | 3135 | 99.8 | Plus |
CG8321-RB | 930 | CG8321-RB | 1..550 | 93..642 | 2750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:56:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12034131..12034432 | 13..314 | 1495 | 99.7 | Plus |
2R | 25286936 | 2R | 12035488..12035710 | 315..537 | 1115 | 100 | Plus |
2R | 25286936 | 2R | 12035775..12035880 | 537..642 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:56:40 has no hits.
BS06231.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:16 Download gff for
BS06231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-RA | 1..624 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:52 Download gff for
BS06231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-RA | 182..820 | 9..650 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:02:56 Download gff for
BS06231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-RA | 190..813 | 17..640 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:16 Download gff for
BS06231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-RA | 182..820 | 9..650 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:29:36 Download gff for
BS06231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8321-RA | 190..813 | 17..640 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:29:36 Download gff for
BS06231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12034135..12034432 | 17..314 | 100 | -> | Plus |
2R | 12035488..12035710 | 315..537 | 100 | -> | Plus |
2R | 12035776..12035878 | 538..640 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:02:56 Download gff for
BS06231.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7921640..7921937 | 17..314 | 100 | -> | Plus |
arm_2R | 7922993..7923215 | 315..537 | 100 | -> | Plus |
arm_2R | 7923281..7923383 | 538..640 | 100 | | Plus |
BS06231.pep Sequence
Translation from 16 to 639
> BS06231.pep
MQVEPAEVGCDVTHRQQEKNKTNGIFSTAVRSKKNGQPNGRIYTSTPKTS
HPKLEHYVGVAKPSEKGRVGVVTALDPLIKKVALLFGTLIIGYKSVILTM
PYITGDSIQVLSHQVQSRWNETLVWATRHQLGSRLSPLLCGLLVAAFAYG
IVYLDSAVPGVNPPSPFTPRSKKRFREEKTASMHLGYLCALFCGFLVTVF
MYFDLYS*
BS06231.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8321-PA | 207 | CG8321-PA | 1..207 | 1..207 | 1083 | 100 | Plus |
CG8321-PB | 108 | CG8321-PB | 1..108 | 100..207 | 575 | 100 | Plus |