Clone Sequence Records
BS06232.3prime Sequence
744 bp (743 high quality bases) assembled on 2005-12-03
> BS06232.3prime
ATGGTCTAGAAAGCTTTTAGTCCTTCTTGTCGTCCACATCCTTGTACCAG
TCCTCGCAGCCGGGCACATTCTCGGGAGCATCGCACATCTCGGTGGCATC
GTTGTAGACCTCGCCCAGCTGGCAGCCCAGATCCCTGGGATCCTCGCCGT
TCAGGCACACGTAGAACTTCTGGCAGTCGGTGGGATGCGGATACTTGGGG
TGGGTCACCACCTGGCCGCGATCGTCGGTCTTTGGCTGATCCTTGGGGCA
CACGAAGCCGGTCTCGGAGGTTCTCTGCTCCGGATTGCAGCCCTCGCGCT
TAGCGGTATCCGGCCACACGCAGGTGCCCGAGTACTCGTCGAAGTGGAGG
CCGACGGTGCACTTGGTCTCCAGGGCGTCGCCTTCGATGCAGTTGTAGAA
GATGTTGCACACGGCGGGATCGGGATGCGCGAAGAAGCCGTTCTTGCGCG
GGCAGTACTTGCTGGACTTCGGCTCCTGGAGCTCAGTGCGGTCCTCGCAG
TCCACATTGAAGGGCTGGTCGCACTTGTTGAACTTGCGGTTGAGTGGATC
GAAGACCAGGCCATCGGGACAGAGCTTCGCCTTGGCCACTCCGTCGTCGC
AGACGTAGAACTTGTCGCACTGCACCTCATCGGCGAACTGGCCATTGGGC
TTCGGGCACTCGAAGTTGGCGGCGGACACGGTTGTCGCCACACACAGGGT
CACAGCAATGGCACATAAAAATAACTTCATGTCGACTGATAACT
BS06232.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17052-PA | 714 | CG17052-RA | 1..714 | 730..17 | 3570 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:06:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-A-RB | 1235 | CG17052-RB | 124..837 | 730..17 | 3570 | 100 | Minus |
obst-A-RA | 1905 | CG17052-RA | 124..837 | 730..17 | 3570 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20241885..20242141 | 273..17 | 1285 | 100 | Minus |
X | 23542271 | X | 20241611..20241815 | 477..273 | 1025 | 100 | Minus |
X | 23542271 | X | 20241062..20241265 | 681..478 | 1020 | 100 | Minus |
X | 23542271 | X | 20239978..20240026 | 730..682 | 245 | 100 | Minus |
Blast to na_te.dros performed 2015-01-30 15:06:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5215..5248 | 327..360 | 107 | 79.4 | Plus |
BS06232.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:42 Download gff for
BS06232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17052-PA | 1..714 | 17..730 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:38 Download gff for
BS06232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17052-PA | 1..714 | 17..730 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:09:49 Download gff for
BS06232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-A-RA | 116..839 | 13..737 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:43 Download gff for
BS06232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-A-RA | 116..839 | 13..737 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:43 Download gff for
BS06232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20239970..20240026 | 682..737 | 94 | -> | Minus |
X | 20241062..20241265 | 478..681 | 100 | -> | Minus |
X | 20241611..20241814 | 274..477 | 100 | -> | Minus |
X | 20241885..20242143 | 13..273 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:09:49 Download gff for
BS06232.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20111044..20111100 | 682..737 | 94 | -> | Minus |
arm_X | 20112136..20112339 | 478..681 | 100 | -> | Minus |
arm_X | 20112685..20112888 | 274..477 | 100 | -> | Minus |
arm_X | 20112959..20113217 | 13..273 | 99 | | Minus |
BS06232.5prime Sequence
744 bp (726 high quality bases) assembled on 2005-12-03
> BS06232.5prime
GAAGTTATCAGTCGACATGAAGTTATTTTTATGTGCCATTGCTGTGACCC
TGTGTGTGGCGACAACCGTGTCCGCCGCCAACTTCGAGTGCCCGAAGCCC
AATGGCCAGTTCGCCGATGAGGTGCAGTGCGACAAGTTCTACGTCTGCGA
CGACGGAGTGGCCAAGGCGAAGCTCTGTCCCGATGGCCTGGTCTTCGATC
CACTCAACCGCAAGTTCAACAAGTGCGACCAGCCCTTCAATGTGGACTGC
GAGGACCGCACTGAGCTCCAGGAGCCGAAGTCCAGCAAGTACTGCCCGCG
CAAGAACGGCTTCTTCGCGCATCCCGATCCCGCCGTGTGCAACATCTTCT
ACAACTGCATCGAAGGCGACGCCCTGGAGACCAAGTGCACCGTCGGCCTC
CACTTCGACGAGTACTCGGGCACCTGCGTGTGGCCGGATACCGCTAAGCG
CGAGGGCTGCAATCCGGAGCAGAGAACCTCCGAGACCGGCTTCGTGTGCC
CCAAGGATCAGCCAAAGACCGACGATCGCGGCCAGGTGGTGACCCACCCC
AAGTATCCGCATCCCACCGACTGCCAGAAGTTCTACGTGTGCCTGAACGG
CGAGGATCCCAGGGATCTGGGCTGCCAGCTGGGCGAGGTCTACAACGATG
CCACCGAGATGTGCGATGCTCCCGAGAATGTGCCCGGCTGCGAGGACTGG
TACAAGGATGTGGACGACAAGAAGGACTAAAAGCTTTCTAGACC
BS06232.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17052-PA | 714 | CG17052-RA | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-A-RB | 1235 | CG17052-RB | 124..837 | 17..730 | 3570 | 100 | Plus |
obst-A-RA | 1905 | CG17052-RA | 124..837 | 17..730 | 3570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20241885..20242141 | 474..730 | 1285 | 100 | Plus |
X | 23542271 | X | 20241611..20241815 | 270..474 | 1025 | 100 | Plus |
X | 23542271 | X | 20241062..20241265 | 66..269 | 1020 | 100 | Plus |
X | 23542271 | X | 20239978..20240026 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed 2015-02-11 09:33:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5215..5248 | 420..387 | 107 | 79.4 | Minus |
BS06232.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:43 Download gff for
BS06232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17052-PA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:39 Download gff for
BS06232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17052-PA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:14:27 Download gff for
BS06232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-A-RA | 116..839 | 10..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:04 Download gff for
BS06232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-A-RA | 116..839 | 10..734 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:04 Download gff for
BS06232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20239970..20240026 | 10..65 | 94 | -> | Plus |
X | 20241062..20241265 | 66..269 | 100 | -> | Plus |
X | 20241611..20241814 | 270..473 | 100 | -> | Plus |
X | 20241885..20242143 | 474..734 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:14:27 Download gff for
BS06232.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20111044..20111100 | 10..65 | 94 | -> | Plus |
arm_X | 20112136..20112339 | 66..269 | 100 | -> | Plus |
arm_X | 20112685..20112888 | 270..473 | 100 | -> | Plus |
arm_X | 20112959..20113217 | 474..734 | 99 | | Plus |
BS06232.complete Sequence
746 bp (746 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635406
> BS06232.complete
GAAGTTATCAGTCGACATGAAGTTATTTTTATGTGCCATTGCTGTGACCC
TGTGTGTGGCGACAACCGTGTCCGCCGCCAACTTCGAGTGCCCGAAGCCC
AATGGCCAGTTCGCCGATGAGGTGCAGTGCGACAAGTTCTACGTCTGCGA
CGACGGAGTGGCCAAGGCGAAGCTCTGTCCCGATGGCCTGGTCTTCGATC
CACTCAACCGCAAGTTCAACAAGTGCGACCAGCCCTTCAATGTGGACTGC
GAGGACCGCACTGAGCTCCAGGAGCCGAAGTCCAGCAAGTACTGCCCGCG
CAAGAACGGCTTCTTCGCGCATCCCGATCCCGCCGTGTGCAACATCTTCT
ACAACTGCATCGAAGGCGACGCCCTGGAGACCAAGTGCACCGTCGGCCTC
CACTTCGACGAGTACTCGGGCACCTGCGTGTGGCCGGATACCGCTAAGCG
CGAGGGCTGCAATCCGGAGCAGAGAACCTCCGAGACCGGCTTCGTGTGCC
CCAAGGATCAGCCAAAGACCGACGATCGCGGCCAGGTGGTGACCCACCCC
AAGTATCCGCATCCCACCGACTGCCAGAAGTTCTACGTGTGCCTGAACGG
CGAGGATCCCAGGGATCTGGGCTGCCAGCTGGGCGAGGTCTACAACGATG
CCACCGAGATGTGCGATGCTCCCGAGAATGTGCCCGGCTGCGAGGACTGG
TACAAGGATGTGGACGACAAGAAGGACTAAAAGCTTTCTAGACCAT
BS06232.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-A-RB | 714 | CG17052-PB | 1..714 | 17..730 | 3570 | 100 | Plus |
obst-A-RA | 714 | CG17052-PA | 1..714 | 17..730 | 3570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-A-RB | 1235 | CG17052-RB | 124..837 | 17..730 | 3570 | 100 | Plus |
obst-A-RA | 1905 | CG17052-RA | 124..837 | 17..730 | 3570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20241885..20242141 | 474..730 | 1285 | 100 | Plus |
X | 23542271 | X | 20241611..20241815 | 270..474 | 1025 | 100 | Plus |
X | 23542271 | X | 20241062..20241265 | 66..269 | 1020 | 100 | Plus |
X | 23542271 | X | 20239978..20240026 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 10:06:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\Ulysses | 10653 | Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). | 5215..5248 | 420..387 | 107 | 79.4 | Minus |
BS06232.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:17 Download gff for
BS06232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-A-RA | 1..714 | 17..730 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:54 Download gff for
BS06232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-A-RA | 111..834 | 10..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:41 Download gff for
BS06232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-A-RA | 124..835 | 17..728 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:17 Download gff for
BS06232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-A-RA | 111..834 | 10..734 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:24 Download gff for
BS06232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
obst-A-RA | 124..835 | 17..728 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:24 Download gff for
BS06232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20239978..20240026 | 17..65 | 100 | -> | Plus |
X | 20241062..20241265 | 66..269 | 100 | -> | Plus |
X | 20241611..20241814 | 270..473 | 100 | -> | Plus |
X | 20241885..20242139 | 474..728 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:41 Download gff for
BS06232.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20112136..20112339 | 66..269 | 100 | -> | Plus |
arm_X | 20112685..20112888 | 270..473 | 100 | -> | Plus |
arm_X | 20111052..20111100 | 17..65 | 100 | -> | Plus |
arm_X | 20112959..20113213 | 474..728 | 100 | | Plus |
BS06232.pep Sequence
Translation from 16 to 729
> BS06232.pep
MKLFLCAIAVTLCVATTVSAANFECPKPNGQFADEVQCDKFYVCDDGVAK
AKLCPDGLVFDPLNRKFNKCDQPFNVDCEDRTELQEPKSSKYCPRKNGFF
AHPDPAVCNIFYNCIEGDALETKCTVGLHFDEYSGTCVWPDTAKREGCNP
EQRTSETGFVCPKDQPKTDDRGQVVTHPKYPHPTDCQKFYVCLNGEDPRD
LGCQLGEVYNDATEMCDAPENVPGCEDWYKDVDDKKD*
BS06232.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
obst-A-PB | 237 | CG17052-PB | 1..237 | 1..237 | 1356 | 100 | Plus |
obst-A-PA | 237 | CG17052-PA | 1..237 | 1..237 | 1356 | 100 | Plus |
obst-B-PA | 337 | CG4778-PA | 85..284 | 24..231 | 548 | 46.6 | Plus |
Gasp-PB | 235 | CG10287-PB | 1..228 | 1..235 | 432 | 37.4 | Plus |
Gasp-PA | 258 | CG10287-PA | 1..228 | 1..235 | 429 | 37 | Plus |