Clone BS06232 Report

Search the DGRC for BS06232

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:32
Vector:pDNR-Dual
Associated Gene/Transcriptobst-A-RA
Protein status:BS06232.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06232.3prime Sequence

744 bp (743 high quality bases) assembled on 2005-12-03

> BS06232.3prime
ATGGTCTAGAAAGCTTTTAGTCCTTCTTGTCGTCCACATCCTTGTACCAG
TCCTCGCAGCCGGGCACATTCTCGGGAGCATCGCACATCTCGGTGGCATC
GTTGTAGACCTCGCCCAGCTGGCAGCCCAGATCCCTGGGATCCTCGCCGT
TCAGGCACACGTAGAACTTCTGGCAGTCGGTGGGATGCGGATACTTGGGG
TGGGTCACCACCTGGCCGCGATCGTCGGTCTTTGGCTGATCCTTGGGGCA
CACGAAGCCGGTCTCGGAGGTTCTCTGCTCCGGATTGCAGCCCTCGCGCT
TAGCGGTATCCGGCCACACGCAGGTGCCCGAGTACTCGTCGAAGTGGAGG
CCGACGGTGCACTTGGTCTCCAGGGCGTCGCCTTCGATGCAGTTGTAGAA
GATGTTGCACACGGCGGGATCGGGATGCGCGAAGAAGCCGTTCTTGCGCG
GGCAGTACTTGCTGGACTTCGGCTCCTGGAGCTCAGTGCGGTCCTCGCAG
TCCACATTGAAGGGCTGGTCGCACTTGTTGAACTTGCGGTTGAGTGGATC
GAAGACCAGGCCATCGGGACAGAGCTTCGCCTTGGCCACTCCGTCGTCGC
AGACGTAGAACTTGTCGCACTGCACCTCATCGGCGAACTGGCCATTGGGC
TTCGGGCACTCGAAGTTGGCGGCGGACACGGTTGTCGCCACACACAGGGT
CACAGCAATGGCACATAAAAATAACTTCATGTCGACTGATAACT

BS06232.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG17052-PA 714 CG17052-RA 1..714 730..17 3570 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-30 15:06:47
Subject Length Description Subject Range Query Range Score Percent Strand
obst-A-RB 1235 CG17052-RB 124..837 730..17 3570 100 Minus
obst-A-RA 1905 CG17052-RA 124..837 730..17 3570 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-30 15:06:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20241885..20242141 273..17 1285 100 Minus
X 23542271 X 20241611..20241815 477..273 1025 100 Minus
X 23542271 X 20241062..20241265 681..478 1020 100 Minus
X 23542271 X 20239978..20240026 730..682 245 100 Minus
Blast to na_te.dros performed 2015-01-30 15:06:44
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5215..5248 327..360 107 79.4 Plus

BS06232.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:42 Download gff for BS06232.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17052-PA 1..714 17..730 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:38 Download gff for BS06232.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17052-PA 1..714 17..730 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 11:09:49 Download gff for BS06232.3prime
Subject Subject Range Query Range Percent Splice Strand
obst-A-RA 116..839 13..737 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-30 17:39:43 Download gff for BS06232.3prime
Subject Subject Range Query Range Percent Splice Strand
obst-A-RA 116..839 13..737 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-30 17:39:43 Download gff for BS06232.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20239970..20240026 682..737 94 -> Minus
X 20241062..20241265 478..681 100 -> Minus
X 20241611..20241814 274..477 100 -> Minus
X 20241885..20242143 13..273 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 11:09:49 Download gff for BS06232.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20111044..20111100 682..737 94 -> Minus
arm_X 20112136..20112339 478..681 100 -> Minus
arm_X 20112685..20112888 274..477 100 -> Minus
arm_X 20112959..20113217 13..273 99   Minus

BS06232.5prime Sequence

744 bp (726 high quality bases) assembled on 2005-12-03

> BS06232.5prime
GAAGTTATCAGTCGACATGAAGTTATTTTTATGTGCCATTGCTGTGACCC
TGTGTGTGGCGACAACCGTGTCCGCCGCCAACTTCGAGTGCCCGAAGCCC
AATGGCCAGTTCGCCGATGAGGTGCAGTGCGACAAGTTCTACGTCTGCGA
CGACGGAGTGGCCAAGGCGAAGCTCTGTCCCGATGGCCTGGTCTTCGATC
CACTCAACCGCAAGTTCAACAAGTGCGACCAGCCCTTCAATGTGGACTGC
GAGGACCGCACTGAGCTCCAGGAGCCGAAGTCCAGCAAGTACTGCCCGCG
CAAGAACGGCTTCTTCGCGCATCCCGATCCCGCCGTGTGCAACATCTTCT
ACAACTGCATCGAAGGCGACGCCCTGGAGACCAAGTGCACCGTCGGCCTC
CACTTCGACGAGTACTCGGGCACCTGCGTGTGGCCGGATACCGCTAAGCG
CGAGGGCTGCAATCCGGAGCAGAGAACCTCCGAGACCGGCTTCGTGTGCC
CCAAGGATCAGCCAAAGACCGACGATCGCGGCCAGGTGGTGACCCACCCC
AAGTATCCGCATCCCACCGACTGCCAGAAGTTCTACGTGTGCCTGAACGG
CGAGGATCCCAGGGATCTGGGCTGCCAGCTGGGCGAGGTCTACAACGATG
CCACCGAGATGTGCGATGCTCCCGAGAATGTGCCCGGCTGCGAGGACTGG
TACAAGGATGTGGACGACAAGAAGGACTAAAAGCTTTCTAGACC

BS06232.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG17052-PA 714 CG17052-RA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:33:54
Subject Length Description Subject Range Query Range Score Percent Strand
obst-A-RB 1235 CG17052-RB 124..837 17..730 3570 100 Plus
obst-A-RA 1905 CG17052-RA 124..837 17..730 3570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 09:33:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20241885..20242141 474..730 1285 100 Plus
X 23542271 X 20241611..20241815 270..474 1025 100 Plus
X 23542271 X 20241062..20241265 66..269 1020 100 Plus
X 23542271 X 20239978..20240026 17..65 245 100 Plus
Blast to na_te.dros performed 2015-02-11 09:33:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5215..5248 420..387 107 79.4 Minus

BS06232.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:43 Download gff for BS06232.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17052-PA 1..714 17..730 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:39 Download gff for BS06232.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17052-PA 1..714 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 02:14:27 Download gff for BS06232.5prime
Subject Subject Range Query Range Percent Splice Strand
obst-A-RA 116..839 10..734 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:05:04 Download gff for BS06232.5prime
Subject Subject Range Query Range Percent Splice Strand
obst-A-RA 116..839 10..734 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:05:04 Download gff for BS06232.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20239970..20240026 10..65 94 -> Plus
X 20241062..20241265 66..269 100 -> Plus
X 20241611..20241814 270..473 100 -> Plus
X 20241885..20242143 474..734 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 02:14:27 Download gff for BS06232.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20111044..20111100 10..65 94 -> Plus
arm_X 20112136..20112339 66..269 100 -> Plus
arm_X 20112685..20112888 270..473 100 -> Plus
arm_X 20112959..20113217 474..734 99   Plus

BS06232.complete Sequence

746 bp (746 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635406

> BS06232.complete
GAAGTTATCAGTCGACATGAAGTTATTTTTATGTGCCATTGCTGTGACCC
TGTGTGTGGCGACAACCGTGTCCGCCGCCAACTTCGAGTGCCCGAAGCCC
AATGGCCAGTTCGCCGATGAGGTGCAGTGCGACAAGTTCTACGTCTGCGA
CGACGGAGTGGCCAAGGCGAAGCTCTGTCCCGATGGCCTGGTCTTCGATC
CACTCAACCGCAAGTTCAACAAGTGCGACCAGCCCTTCAATGTGGACTGC
GAGGACCGCACTGAGCTCCAGGAGCCGAAGTCCAGCAAGTACTGCCCGCG
CAAGAACGGCTTCTTCGCGCATCCCGATCCCGCCGTGTGCAACATCTTCT
ACAACTGCATCGAAGGCGACGCCCTGGAGACCAAGTGCACCGTCGGCCTC
CACTTCGACGAGTACTCGGGCACCTGCGTGTGGCCGGATACCGCTAAGCG
CGAGGGCTGCAATCCGGAGCAGAGAACCTCCGAGACCGGCTTCGTGTGCC
CCAAGGATCAGCCAAAGACCGACGATCGCGGCCAGGTGGTGACCCACCCC
AAGTATCCGCATCCCACCGACTGCCAGAAGTTCTACGTGTGCCTGAACGG
CGAGGATCCCAGGGATCTGGGCTGCCAGCTGGGCGAGGTCTACAACGATG
CCACCGAGATGTGCGATGCTCCCGAGAATGTGCCCGGCTGCGAGGACTGG
TACAAGGATGTGGACGACAAGAAGGACTAAAAGCTTTCTAGACCAT

BS06232.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
obst-A-RB 714 CG17052-PB 1..714 17..730 3570 100 Plus
obst-A-RA 714 CG17052-PA 1..714 17..730 3570 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:06:57
Subject Length Description Subject Range Query Range Score Percent Strand
obst-A-RB 1235 CG17052-RB 124..837 17..730 3570 100 Plus
obst-A-RA 1905 CG17052-RA 124..837 17..730 3570 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20241885..20242141 474..730 1285 100 Plus
X 23542271 X 20241611..20241815 270..474 1025 100 Plus
X 23542271 X 20241062..20241265 66..269 1020 100 Plus
X 23542271 X 20239978..20240026 17..65 245 100 Plus
Blast to na_te.dros performed 2014-11-27 10:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Ulysses 10653 Dvir\Ulysses DVULYSS 10653bp AKA(S37633) Derived from X56645 (Rel. 38, Last updated, Version 6). 5215..5248 420..387 107 79.4 Minus

BS06232.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:17 Download gff for BS06232.complete
Subject Subject Range Query Range Percent Splice Strand
obst-A-RA 1..714 17..730 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:54 Download gff for BS06232.complete
Subject Subject Range Query Range Percent Splice Strand
obst-A-RA 111..834 10..734 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:41 Download gff for BS06232.complete
Subject Subject Range Query Range Percent Splice Strand
obst-A-RA 124..835 17..728 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:17 Download gff for BS06232.complete
Subject Subject Range Query Range Percent Splice Strand
obst-A-RA 111..834 10..734 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:24 Download gff for BS06232.complete
Subject Subject Range Query Range Percent Splice Strand
obst-A-RA 124..835 17..728 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:24 Download gff for BS06232.complete
Subject Subject Range Query Range Percent Splice Strand
X 20239978..20240026 17..65 100 -> Plus
X 20241062..20241265 66..269 100 -> Plus
X 20241611..20241814 270..473 100 -> Plus
X 20241885..20242139 474..728 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:41 Download gff for BS06232.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 20112136..20112339 66..269 100 -> Plus
arm_X 20112685..20112888 270..473 100 -> Plus
arm_X 20111052..20111100 17..65 100 -> Plus
arm_X 20112959..20113213 474..728 100   Plus

BS06232.pep Sequence

Translation from 16 to 729

> BS06232.pep
MKLFLCAIAVTLCVATTVSAANFECPKPNGQFADEVQCDKFYVCDDGVAK
AKLCPDGLVFDPLNRKFNKCDQPFNVDCEDRTELQEPKSSKYCPRKNGFF
AHPDPAVCNIFYNCIEGDALETKCTVGLHFDEYSGTCVWPDTAKREGCNP
EQRTSETGFVCPKDQPKTDDRGQVVTHPKYPHPTDCQKFYVCLNGEDPRD
LGCQLGEVYNDATEMCDAPENVPGCEDWYKDVDDKKD*

BS06232.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:43
Subject Length Description Subject Range Query Range Score Percent Strand
obst-A-PB 237 CG17052-PB 1..237 1..237 1356 100 Plus
obst-A-PA 237 CG17052-PA 1..237 1..237 1356 100 Plus
obst-B-PA 337 CG4778-PA 85..284 24..231 548 46.6 Plus
Gasp-PB 235 CG10287-PB 1..228 1..235 432 37.4 Plus
Gasp-PA 258 CG10287-PA 1..228 1..235 429 37 Plus