Clone BS06234 Report

Search the DGRC for BS06234

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:34
Vector:pDNR-Dual
Associated Gene/Transcriptunc-119-RA
Protein status:BS06234.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06234.5prime Sequence

828 bp (721 high quality bases) assembled on 2005-12-03

> BS06234.5prime
GAAGTTATCAGTCGACATGAGCGTGGTGGGTAAGCAACTAAATCCGGTGC
AATCCTCCGGTGCAGGCGCAGTGACAACGTCTTCCTCCGCGGCCGCAGGA
TCCTCTTCTTCGAACAGTGGAGTGGAGGCCAACGGCGGCAGTGGAGGATC
GTCGGGAGCTGCAGCAGCGGGCGCTGGTGCCTCCGGTGATGCCAAACGGC
CTGCGGAGTCTTCCAGCGTGACTCCCGACGAGGTGCTCCATCTGACCAAG
ATCACGGACGACTATCTCTGCTCCGCCAATGCAAATGTGTTCGAGATTGA
TTTCACGCGGTTCAAGATTCGCGACCTGGAGAGCGGCGCTGTGCTCTTCG
AGATCGCCAAACCGCCGAGTGAACAATATCCGGAAGGACTGTCCTCGGAT
GAAACCATGCTGGCGGCTGCCGAGAAATTGTCACTGGATGACACTGCCGA
TCCAAATGCCGGACGCTATGTGCGCTATCAGTTCACACCGGCATTTCTCA
ACCTCAAAACAGTGGGAGCCACTGTGGAATTCACTGTGGGCAGCCAGCCG
CTTAATAATTTTCGTATGATCGAACGCCACTTCTTCCGCGATCGCCTGCT
AAAGACGTTTGACTTTGAGTTCGGCTTTTGCTTTCCATTTTCGAAGAATA
CGGTTGAGCACATCTACGAGTTTCCTAACCTTCCACCCGACCTAGTTGCT
GAGATGATATCGAGCCCCTTTGAGACGCGCTCGGACAGCTTTTACTTTGT
GGGAAACCGACTCGTCATGCACAACAAAACCGACTACGCCTACGATGGGC
GCAATATAGTCTAGAAGCTTTCTAGACC

BS06234.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1659-PA 798 unc-119-RA 1..798 17..814 3915 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:45:10
Subject Length Description Subject Range Query Range Score Percent Strand
unc-119-RC 2340 CG1659-RC 764..1563 17..816 3955 99.6 Plus
unc-119-RA 2031 CG1659-RA 768..1567 17..816 3955 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:45:02
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7289745..7290250 522..17 2530 100 Minus
X 23542271 X 7289506..7289678 695..523 865 100 Minus
X 23542271 X 7289144..7289267 816..693 575 97.6 Minus
Blast to na_te.dros performed on 2015-02-04 02:45:06 has no hits.

BS06234.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:45 Download gff for BS06234.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1659-PA 1..798 17..814 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:41 Download gff for BS06234.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1659-PA 1..798 17..814 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:53:32 Download gff for BS06234.5prime
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 758..1570 8..819 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:38:57 Download gff for BS06234.5prime
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 758..1570 8..819 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:38:57 Download gff for BS06234.5prime
Subject Subject Range Query Range Percent Splice Strand
X 7289141..7289264 696..819 96 <- Minus
X 7289506..7289678 523..695 100 <- Minus
X 7289745..7290260 8..522 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:53:32 Download gff for BS06234.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7183174..7183297 696..819 96 <- Minus
arm_X 7183539..7183711 523..695 100 <- Minus
arm_X 7183778..7184293 8..522 99   Minus

BS06234.3prime Sequence

828 bp (771 high quality bases) assembled on 2005-12-03

> BS06234.3prime
ATGGTCTAGAAAGCTTCTAGACTATATTGCCGCCATCGTAGGCGTAGTCG
GCTTTGTTGTGCATGACGAGTCGGTTTCCCACAAAGTAAAAGCTGTCCGA
GCGCGTCTCAAAGGGGCTCGATATCATCTCAGCAACTAGGTCGGGTGGAA
GGTTAGGAAACTCGTAGATGTGCTCAACCGTATTCTTCGAAAATGGAAAG
CAAAAGCCGAACTCAAAGTCAAACGTCTTTAGCAGGCGATCGCGGAAGAA
GTGGCGTTCGATCATACGAAAATTATTAAGCGGCTGGCTGCCCACAGTGA
ATTCCACAGTGGCTCCCACTGTTTTGAGGTTGAGAAATGCCGGTGTGAAC
TGATAGCGCACATAGCGTCCGGCATTTGGATCGGCAGTGTCATCCAGTGA
CAATTTCTCGGCAGCCGCCAGCATGGTTTCATCCGAGGACAGTCCTTCCG
GATATTGTTCACTCGGCGGTTTGGCGATCTCGAAGAGCACAGCGCCGCTC
TCCAGGTCGCGAATCTTGAACCGCGTGAAATCAATCTCGAACACATTTGC
ATTGGCGGAGCAGAGATAGTCGTCCGTGATCTTGGTCAGATGGAGCACCT
CGTCGGGAGTCACGCTGGAAGACTCCGCAGGCCGTTTGGCATCACCGGAG
GCACCAGCGCCCGCTGCTGCAGCTCCCGACGATCCTCCACTGCCGCCGTT
GGCCTCCACTCCACTGTTCGAAGAAGAGGATCCTGCGGCCGCGGAGGAAG
ACGTTGTCACTGCGCCTGCACCGGAGGATTGCACCGGATTTAGTTGCTTA
CCCACCACGCTCATGTCGACTGATAACT

BS06234.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1659-PA 798 unc-119-RA 1..798 814..17 3990 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:59:50
Subject Length Description Subject Range Query Range Score Percent Strand
unc-119-RC 2340 CG1659-RC 764..1563 814..15 4000 100 Minus
unc-119-RA 2031 CG1659-RA 768..1567 814..15 4000 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7289745..7290250 309..814 2530 100 Plus
X 23542271 X 7289506..7289678 136..308 865 100 Plus
X 23542271 X 7289144..7289267 15..138 620 100 Plus
Blast to na_te.dros performed on 2015-01-31 16:59:46 has no hits.

BS06234.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:44 Download gff for BS06234.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1659-PA 1..798 17..814 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:40 Download gff for BS06234.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1659-PA 1..798 17..814 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:29:15 Download gff for BS06234.3prime
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 758..1570 12..823 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:46:21 Download gff for BS06234.3prime
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 758..1570 12..823 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:46:21 Download gff for BS06234.3prime
Subject Subject Range Query Range Percent Splice Strand
X 7289141..7289264 12..135 99 <- Plus
X 7289506..7289678 136..308 100 <- Plus
X 7289745..7290260 309..823 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:29:15 Download gff for BS06234.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 7183174..7183297 12..135 99 <- Plus
arm_X 7183539..7183711 136..308 100 <- Plus
arm_X 7183778..7184293 309..823 99   Plus

BS06234.complete Sequence

830 bp (830 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635407

> BS06234.complete
GAAGTTATCAGTCGACATGAGCGTGGTGGGTAAGCAACTAAATCCGGTGC
AATCCTCCGGTGCAGGCGCAGTGACAACGTCTTCCTCCGCGGCCGCAGGA
TCCTCTTCTTCGAACAGTGGAGTGGAGGCCAACGGCGGCAGTGGAGGATC
GTCGGGAGCTGCAGCAGCGGGCGCTGGTGCCTCCGGTGATGCCAAACGGC
CTGCGGAGTCTTCCAGCGTGACTCCCGACGAGGTGCTCCATCTGACCAAG
ATCACGGACGACTATCTCTGCTCCGCCAATGCAAATGTGTTCGAGATTGA
TTTCACGCGGTTCAAGATTCGCGACCTGGAGAGCGGCGCTGTGCTCTTCG
AGATCGCCAAACCGCCGAGTGAACAATATCCGGAAGGACTGTCCTCGGAT
GAAACCATGCTGGCGGCTGCCGAGAAATTGTCACTGGATGACACTGCCGA
TCCAAATGCCGGACGCTATGTGCGCTATCAGTTCACACCGGCATTTCTCA
ACCTCAAAACAGTGGGAGCCACTGTGGAATTCACTGTGGGCAGCCAGCCG
CTTAATAATTTTCGTATGATCGAACGCCACTTCTTCCGCGATCGCCTGCT
AAAGACGTTTGACTTTGAGTTCGGCTTTTGCTTTCCATTTTCGAAGAATA
CGGTTGAGCACATCTACGAGTTTCCTAACCTTCCACCCGACCTAGTTGCT
GAGATGATATCGAGCCCCTTTGAGACGCGCTCGGACAGCTTTTACTTTGT
GGGAAACCGACTCGTCATGCACAACAAAGCCGACTACGCCTACGATGGCG
GCAATATAGTCTAGAAGCTTTCTAGACCAT

BS06234.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:14
Subject Length Description Subject Range Query Range Score Percent Strand
unc-119-RC 798 CG1659-PC 1..798 17..814 3990 100 Plus
unc-119-RA 798 CG1659-PA 1..798 17..814 3990 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:16
Subject Length Description Subject Range Query Range Score Percent Strand
unc-119-RC 2340 CG1659-RC 764..1563 17..816 4000 100 Plus
unc-119-RA 2031 CG1659-RA 768..1567 17..816 4000 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7289745..7290250 522..17 2530 100 Minus
X 23542271 X 7289506..7289678 695..523 865 100 Minus
X 23542271 X 7289144..7289267 816..693 620 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:45:13 has no hits.

BS06234.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:19 Download gff for BS06234.complete
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 1..798 17..814 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:55 Download gff for BS06234.complete
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 764..1576 8..819 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:02 Download gff for BS06234.complete
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 768..1565 17..814 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:19 Download gff for BS06234.complete
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 764..1576 8..819 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:01 Download gff for BS06234.complete
Subject Subject Range Query Range Percent Splice Strand
unc-119-RA 768..1565 17..814 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:01 Download gff for BS06234.complete
Subject Subject Range Query Range Percent Splice Strand
X 7289146..7289264 696..814 100 <- Minus
X 7289506..7289678 523..695 100 <- Minus
X 7289745..7290250 17..522 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:02 Download gff for BS06234.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 7183179..7183297 696..814 100 <- Minus
arm_X 7183539..7183711 523..695 100 <- Minus
arm_X 7183778..7184283 17..522 100   Minus

BS06234.pep Sequence

Translation from 16 to 813

> BS06234.pep
MSVVGKQLNPVQSSGAGAVTTSSSAAAGSSSSNSGVEANGGSGGSSGAAA
AGAGASGDAKRPAESSSVTPDEVLHLTKITDDYLCSANANVFEIDFTRFK
IRDLESGAVLFEIAKPPSEQYPEGLSSDETMLAAAEKLSLDDTADPNAGR
YVRYQFTPAFLNLKTVGATVEFTVGSQPLNNFRMIERHFFRDRLLKTFDF
EFGFCFPFSKNTVEHIYEFPNLPPDLVAEMISSPFETRSDSFYFVGNRLV
MHNKADYAYDGGNIV*

BS06234.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:38
Subject Length Description Subject Range Query Range Score Percent Strand
unc-119-PC 265 CG1659-PC 1..265 1..265 1359 100 Plus
unc-119-PA 265 CG1659-PA 1..265 1..265 1359 100 Plus