Clone Sequence Records
BS06234.5prime Sequence
828 bp (721 high quality bases) assembled on 2005-12-03
> BS06234.5prime
GAAGTTATCAGTCGACATGAGCGTGGTGGGTAAGCAACTAAATCCGGTGC
AATCCTCCGGTGCAGGCGCAGTGACAACGTCTTCCTCCGCGGCCGCAGGA
TCCTCTTCTTCGAACAGTGGAGTGGAGGCCAACGGCGGCAGTGGAGGATC
GTCGGGAGCTGCAGCAGCGGGCGCTGGTGCCTCCGGTGATGCCAAACGGC
CTGCGGAGTCTTCCAGCGTGACTCCCGACGAGGTGCTCCATCTGACCAAG
ATCACGGACGACTATCTCTGCTCCGCCAATGCAAATGTGTTCGAGATTGA
TTTCACGCGGTTCAAGATTCGCGACCTGGAGAGCGGCGCTGTGCTCTTCG
AGATCGCCAAACCGCCGAGTGAACAATATCCGGAAGGACTGTCCTCGGAT
GAAACCATGCTGGCGGCTGCCGAGAAATTGTCACTGGATGACACTGCCGA
TCCAAATGCCGGACGCTATGTGCGCTATCAGTTCACACCGGCATTTCTCA
ACCTCAAAACAGTGGGAGCCACTGTGGAATTCACTGTGGGCAGCCAGCCG
CTTAATAATTTTCGTATGATCGAACGCCACTTCTTCCGCGATCGCCTGCT
AAAGACGTTTGACTTTGAGTTCGGCTTTTGCTTTCCATTTTCGAAGAATA
CGGTTGAGCACATCTACGAGTTTCCTAACCTTCCACCCGACCTAGTTGCT
GAGATGATATCGAGCCCCTTTGAGACGCGCTCGGACAGCTTTTACTTTGT
GGGAAACCGACTCGTCATGCACAACAAAACCGACTACGCCTACGATGGGC
GCAATATAGTCTAGAAGCTTTCTAGACC
BS06234.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1659-PA | 798 | unc-119-RA | 1..798 | 17..814 | 3915 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:45:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
unc-119-RC | 2340 | CG1659-RC | 764..1563 | 17..816 | 3955 | 99.6 | Plus |
unc-119-RA | 2031 | CG1659-RA | 768..1567 | 17..816 | 3955 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:45:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7289745..7290250 | 522..17 | 2530 | 100 | Minus |
X | 23542271 | X | 7289506..7289678 | 695..523 | 865 | 100 | Minus |
X | 23542271 | X | 7289144..7289267 | 816..693 | 575 | 97.6 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:45:06 has no hits.
BS06234.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:45 Download gff for
BS06234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1659-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:41 Download gff for
BS06234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1659-PA | 1..798 | 17..814 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:53:32 Download gff for
BS06234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-119-RA | 758..1570 | 8..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:38:57 Download gff for
BS06234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-119-RA | 758..1570 | 8..819 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:38:57 Download gff for
BS06234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7289141..7289264 | 696..819 | 96 | <- | Minus |
X | 7289506..7289678 | 523..695 | 100 | <- | Minus |
X | 7289745..7290260 | 8..522 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:53:32 Download gff for
BS06234.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7183174..7183297 | 696..819 | 96 | <- | Minus |
arm_X | 7183539..7183711 | 523..695 | 100 | <- | Minus |
arm_X | 7183778..7184293 | 8..522 | 99 | | Minus |
BS06234.3prime Sequence
828 bp (771 high quality bases) assembled on 2005-12-03
> BS06234.3prime
ATGGTCTAGAAAGCTTCTAGACTATATTGCCGCCATCGTAGGCGTAGTCG
GCTTTGTTGTGCATGACGAGTCGGTTTCCCACAAAGTAAAAGCTGTCCGA
GCGCGTCTCAAAGGGGCTCGATATCATCTCAGCAACTAGGTCGGGTGGAA
GGTTAGGAAACTCGTAGATGTGCTCAACCGTATTCTTCGAAAATGGAAAG
CAAAAGCCGAACTCAAAGTCAAACGTCTTTAGCAGGCGATCGCGGAAGAA
GTGGCGTTCGATCATACGAAAATTATTAAGCGGCTGGCTGCCCACAGTGA
ATTCCACAGTGGCTCCCACTGTTTTGAGGTTGAGAAATGCCGGTGTGAAC
TGATAGCGCACATAGCGTCCGGCATTTGGATCGGCAGTGTCATCCAGTGA
CAATTTCTCGGCAGCCGCCAGCATGGTTTCATCCGAGGACAGTCCTTCCG
GATATTGTTCACTCGGCGGTTTGGCGATCTCGAAGAGCACAGCGCCGCTC
TCCAGGTCGCGAATCTTGAACCGCGTGAAATCAATCTCGAACACATTTGC
ATTGGCGGAGCAGAGATAGTCGTCCGTGATCTTGGTCAGATGGAGCACCT
CGTCGGGAGTCACGCTGGAAGACTCCGCAGGCCGTTTGGCATCACCGGAG
GCACCAGCGCCCGCTGCTGCAGCTCCCGACGATCCTCCACTGCCGCCGTT
GGCCTCCACTCCACTGTTCGAAGAAGAGGATCCTGCGGCCGCGGAGGAAG
ACGTTGTCACTGCGCCTGCACCGGAGGATTGCACCGGATTTAGTTGCTTA
CCCACCACGCTCATGTCGACTGATAACT
BS06234.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1659-PA | 798 | unc-119-RA | 1..798 | 814..17 | 3990 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-01-31 16:59:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
unc-119-RC | 2340 | CG1659-RC | 764..1563 | 814..15 | 4000 | 100 | Minus |
unc-119-RA | 2031 | CG1659-RA | 768..1567 | 814..15 | 4000 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-01-31 16:59:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7289745..7290250 | 309..814 | 2530 | 100 | Plus |
X | 23542271 | X | 7289506..7289678 | 136..308 | 865 | 100 | Plus |
X | 23542271 | X | 7289144..7289267 | 15..138 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2015-01-31 16:59:46 has no hits.
BS06234.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:44 Download gff for
BS06234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1659-PA | 1..798 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:40 Download gff for
BS06234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1659-PA | 1..798 | 17..814 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-07 09:29:15 Download gff for
BS06234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-119-RA | 758..1570 | 12..823 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-01-31 17:46:21 Download gff for
BS06234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-119-RA | 758..1570 | 12..823 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-01-31 17:46:21 Download gff for
BS06234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7289141..7289264 | 12..135 | 99 | <- | Plus |
X | 7289506..7289678 | 136..308 | 100 | <- | Plus |
X | 7289745..7290260 | 309..823 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-07 09:29:15 Download gff for
BS06234.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7183174..7183297 | 12..135 | 99 | <- | Plus |
arm_X | 7183539..7183711 | 136..308 | 100 | <- | Plus |
arm_X | 7183778..7184293 | 309..823 | 99 | | Plus |
BS06234.complete Sequence
830 bp (830 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635407
> BS06234.complete
GAAGTTATCAGTCGACATGAGCGTGGTGGGTAAGCAACTAAATCCGGTGC
AATCCTCCGGTGCAGGCGCAGTGACAACGTCTTCCTCCGCGGCCGCAGGA
TCCTCTTCTTCGAACAGTGGAGTGGAGGCCAACGGCGGCAGTGGAGGATC
GTCGGGAGCTGCAGCAGCGGGCGCTGGTGCCTCCGGTGATGCCAAACGGC
CTGCGGAGTCTTCCAGCGTGACTCCCGACGAGGTGCTCCATCTGACCAAG
ATCACGGACGACTATCTCTGCTCCGCCAATGCAAATGTGTTCGAGATTGA
TTTCACGCGGTTCAAGATTCGCGACCTGGAGAGCGGCGCTGTGCTCTTCG
AGATCGCCAAACCGCCGAGTGAACAATATCCGGAAGGACTGTCCTCGGAT
GAAACCATGCTGGCGGCTGCCGAGAAATTGTCACTGGATGACACTGCCGA
TCCAAATGCCGGACGCTATGTGCGCTATCAGTTCACACCGGCATTTCTCA
ACCTCAAAACAGTGGGAGCCACTGTGGAATTCACTGTGGGCAGCCAGCCG
CTTAATAATTTTCGTATGATCGAACGCCACTTCTTCCGCGATCGCCTGCT
AAAGACGTTTGACTTTGAGTTCGGCTTTTGCTTTCCATTTTCGAAGAATA
CGGTTGAGCACATCTACGAGTTTCCTAACCTTCCACCCGACCTAGTTGCT
GAGATGATATCGAGCCCCTTTGAGACGCGCTCGGACAGCTTTTACTTTGT
GGGAAACCGACTCGTCATGCACAACAAAGCCGACTACGCCTACGATGGCG
GCAATATAGTCTAGAAGCTTTCTAGACCAT
BS06234.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:45:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
unc-119-RC | 798 | CG1659-PC | 1..798 | 17..814 | 3990 | 100 | Plus |
unc-119-RA | 798 | CG1659-PA | 1..798 | 17..814 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:45:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
unc-119-RC | 2340 | CG1659-RC | 764..1563 | 17..816 | 4000 | 100 | Plus |
unc-119-RA | 2031 | CG1659-RA | 768..1567 | 17..816 | 4000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:45:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7289745..7290250 | 522..17 | 2530 | 100 | Minus |
X | 23542271 | X | 7289506..7289678 | 695..523 | 865 | 100 | Minus |
X | 23542271 | X | 7289144..7289267 | 816..693 | 620 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:45:13 has no hits.
BS06234.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:19 Download gff for
BS06234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-119-RA | 1..798 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:55 Download gff for
BS06234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-119-RA | 764..1576 | 8..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:26:02 Download gff for
BS06234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-119-RA | 768..1565 | 17..814 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:19 Download gff for
BS06234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-119-RA | 764..1576 | 8..819 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:04:01 Download gff for
BS06234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
unc-119-RA | 768..1565 | 17..814 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:04:01 Download gff for
BS06234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7289146..7289264 | 696..814 | 100 | <- | Minus |
X | 7289506..7289678 | 523..695 | 100 | <- | Minus |
X | 7289745..7290250 | 17..522 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:26:02 Download gff for
BS06234.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 7183179..7183297 | 696..814 | 100 | <- | Minus |
arm_X | 7183539..7183711 | 523..695 | 100 | <- | Minus |
arm_X | 7183778..7184283 | 17..522 | 100 | | Minus |
BS06234.pep Sequence
Translation from 16 to 813
> BS06234.pep
MSVVGKQLNPVQSSGAGAVTTSSSAAAGSSSSNSGVEANGGSGGSSGAAA
AGAGASGDAKRPAESSSVTPDEVLHLTKITDDYLCSANANVFEIDFTRFK
IRDLESGAVLFEIAKPPSEQYPEGLSSDETMLAAAEKLSLDDTADPNAGR
YVRYQFTPAFLNLKTVGATVEFTVGSQPLNNFRMIERHFFRDRLLKTFDF
EFGFCFPFSKNTVEHIYEFPNLPPDLVAEMISSPFETRSDSFYFVGNRLV
MHNKADYAYDGGNIV*
BS06234.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
unc-119-PC | 265 | CG1659-PC | 1..265 | 1..265 | 1359 | 100 | Plus |
unc-119-PA | 265 | CG1659-PA | 1..265 | 1..265 | 1359 | 100 | Plus |