Clone Sequence Records
BS06235.complete Sequence
2138 bp assembled on 2009-12-07
GenBank Submission: KX797933
> BS06235.complete
GAAGTTATCAGTCGACATGAGCACCGCCGTAGAAGTGGCTAACACGGCTC
CGGAGAAGTTGGCCAACTACTTTGCGCTACAGTCGGCGTTTGAGAAAGCC
CTTGAATTGGCCATCACCGACGGCAAAGTGGAGCTGTTGGTCAAGGAGTA
CAATAGATTCCCGGCCAACACCGAGCACGACAAGCGCTTACCCATGGACC
ACGCGTTCCGCGTGCTCCTGATGAAGCGGCTGGACGAAGATGTGAGTCGC
ATTGGAGAGCTTGTACGCCTCTCCGTGGAAGCCACGCGGGCCGAGATTGT
GTCCAACACCATACCCGTGGTTCTGCTGATCGACACCTTCGACGTGGTCA
CTCTGGACAAGTGCCAGAAGATATTTCAGTTTGTCGAGGATATGGTGGAG
GTGTGGAAGGAGGAGATCTTCTTTTCCTCATGCAAGAACAACATTCTACG
CATGTGCAACGACCTGCTGCGTCGACTTTCGCGCACCCAGAACACCGTCT
TCTGTGGCCGCATCCAGCTTTTCCTCTCAAAGTTCTTTCCCTTTTCGGAG
CGGTCTGGCCTCAACATCGTCTCCGAATTCAACCTGGACAACTTTACGGA
GTACGGTCTGGACAGCAAAGACCACGACGAAAGCGACAACAAGGAGCTGG
AGGATACCGCTGAGGACATCCCCCTAAAGATCGACTACGACCTGTACTGC
AAGTTTTGGTCGCTGCAGGACTTTTTCCGAAATCCCAACCAGTGTTACAA
TAAGCCGCAGTGGAAGATGTTCCAGATGCACGCTGACAACATACTACAGT
CCTTCTCGAGCTTCAAGCTGGAAGACGTGCGCCAAAGTAGCAACGAAAAT
GCGAGCGGTACTGACCAAGCAATGGATGTGGACGAGGAGGCAGTAGACAC
CACGGCGGTGTCTTCCGTCATCAAGGCGAATCACTTCTTCGCCAAGTTTC
TAACCAATCCCAAGCTTTTGGCTCTGCAGCTCTCCGACGCTAATTTTCGA
CGTGCTGTTCTGGTGCAGTTTCTAATTCTATTTCAGTACCTGCAAGTCAG
TGTAAAGTTTAAAAGTGATACTCAAACCTTGACTGCAGACCAGGCGGACT
TTATCAAGGAAACAGAGTCGCGTGTTTATAAGTTGCTAGAGGAGACACCA
CCGTACGGTAAGCGGTTTTCACGGACAGTGTATCACATGCTGGCCCGCGA
AGAGATGTGGAACAACTGGAAGAACGAAGGCTGCAAGGAATTCAAGAAGC
CCGAGGAACCAACTCTCAGCGAAGAGGACTCGAAGCCAACTCCCAATAAA
AGACCGCGCCGTCCATTGGGCGATGCACTGCGCGATGCTTCCCGCAGCGG
CAAGTTTTATTTGGGAAATGACAACCTAACACGTTTGTGGAACTACTCTC
CAGATAACTTGCAGGCCTGCAAAAGTGAACAGCGAAACTTCCTACCGCTG
CTGGAGACATATTTAGAAACGCCGCACGAAAAGGTTGATCCCGCTTTTGA
GTGGCGAGCTCTGCGCTTGCTTGCCCGCCAAACACCGCACTTCTTTACGT
CGCTCTCTCAGCCATCGAGCAAGATCTCCGATTATCTTGAGCAAGTGCGC
AAACGTCTCATCCGGGACAAAGAGCCCAAACCTGCTGCCCTTTTATCGAA
CAACTCTTCTGAGAACAATTTTGGCCTGTCGGTCAACAACGTTCATACGG
AGGGCGAGCAGGATGCTACGGTCGCCCTTCAGGACGGTGAACCAGAGCAG
GATCTTGAAGTAGAGGACAACGAACCTGTGGTGGAAGAGGTGGATGAGGT
ACCGGCGCACGAGAAACCCCTTATGGTTACCAAAGAGCATATCGAAGAGG
TGGCGCCCCTTATAGGCGAGCCATGGATGAAGGTGGGAAAGAAGATTGGC
TTCACCAACGATGAACTTCTCTTCTTTCAAATGGAGCATCCTACGGCGAA
CGTGGCCTGCGTTAAGATGCTGACAAACTGGATATCCGATGACGACGACG
CCACCCTGGAAAACTGGGCGTACATGCTAGAGGGATTGGAGATGAATAAG
GCCGCCGAAGCGGTGAAGGCGATTATTGAGCGCGAAAAATCTGGATCCAC
TGCCGCCTTCTGCCTCCGGTAAAAGCTTTCTAGACCAT
BS06235.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:09:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hpr1-RA | 2106 | CG2031-PA | 1..2106 | 17..2122 | 10530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:09:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hpr1-RA | 2311 | CG2031-RA | 109..2214 | 17..2122 | 10530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:09:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5818891..5819644 | 2122..1369 | 3770 | 100 | Minus |
| 3R | 32079331 | 3R | 5820504..5821193 | 778..89 | 3435 | 99.9 | Minus |
| 3R | 32079331 | 3R | 5819699..5820003 | 1368..1064 | 1525 | 100 | Minus |
| 3R | 32079331 | 3R | 5820060..5820347 | 1065..778 | 1440 | 100 | Minus |
| 3R | 32079331 | 3R | 5821255..5821332 | 94..17 | 390 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:09:24 has no hits.
BS06235.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:51:25 Download gff for
BS06235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hpr1-RA | 96..2199 | 17..2120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:12:15 Download gff for
BS06235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hpr1-RA | 109..2212 | 17..2120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-23 17:55:22 Download gff for
BS06235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hpr1-RA | 96..2199 | 17..2120 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:23:02 Download gff for
BS06235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hpr1-RA | 109..2212 | 17..2120 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:23:02 Download gff for
BS06235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5818893..5819644 | 1369..2120 | 100 | <- | Minus |
| 3R | 5819699..5820001 | 1066..1368 | 100 | <- | Minus |
| 3R | 5820060..5820346 | 779..1065 | 100 | <- | Minus |
| 3R | 5820504..5821187 | 95..778 | 100 | <- | Minus |
| 3R | 5821255..5821332 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:12:15 Download gff for
BS06235.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1644615..1645366 | 1369..2120 | 100 | <- | Minus |
| arm_3R | 1645421..1645723 | 1066..1368 | 100 | <- | Minus |
| arm_3R | 1645782..1646068 | 779..1065 | 100 | <- | Minus |
| arm_3R | 1646226..1646909 | 95..778 | 100 | <- | Minus |
| arm_3R | 1646977..1647054 | 17..94 | 100 | | Minus |
BS06235.3prime Sequence
873 bp (773 high quality bases) assembled on 2005-12-03
> BS06235.3prime
ATGGTCTAGAAAGCTTTTACCGGAGGCAGAAGGCGGCAGTGGATCCAGAT
TTTTCGCGCTCAATAATCGCCTTCACCGCTTCGGCGGCCTTATTCATCTC
CAATCCCTCTAGCATGTACGCCCAGTTTTCCAGGGTGGCGTCGTCGTCAT
CGGATATCCAGTTTGTCAGCATCTTAACGCAGGCCACGTTCGCCGTAGGA
TGCTCCATTTGAAAGAAGAGAAGTTCATCGTTGGTGAAGCCAATCTTCTT
TCCCACCTTCATCCATGGCTCGCCTATAAGGGGCGCCACCTCTTCGATAT
GCTCTTTGGTAACCATAAGGGGTTTCTCGTGCGCCGGTACCTCATCCACC
TCTTCCACCACAGGTTCGTTGTCCTCTACTTCAAGATCCTGCTCTGGTTC
ACCGTCCTGAAGGGCGACCGTAGCATCCTGCTCGCCCTCCGTATGAACGT
TGTTGACCGACAGGCCAAAATTGTTCTCAGAAGAGTTGTTCGATAAAAGG
GCAGCAGGTTTGGGCTCTTTGTCCCGGATGAGACGTTTGCGCACTTGCTC
AAGATAATCGGAGATCTTGCTCGATGGCTGAGAGAGCGACGTAAAGAAGT
GCGGTGTTTGGCGGGCAAGCAAGCGCAGAGCTCGCCACTCAAAAGCGGGA
TCAACCTTTTCGTGCGGCGTTTCTAAATATGTCTCCAGCAGCGGTAGGAA
GTTTCGCTGTTCACTTTTGCAGGCCTGCAAGTTATCTGGAGAGTAGTTCC
ACAAACGTGTTAGGTTGTCATTTCCCAAATAAAACTTGCCGCTGCGGGAA
GCATCGCGCAGTGCATCGCCCAATGGACGGCGCGGTCTTTTATTGGGAGT
TGGCTTCGAGTCCTCTTCGCTGA
BS06235.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2031-PA | 2106 | Hpr1-RA | 1250..2106 | 873..17 | 4285 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:17:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hpr1-RA | 2311 | CG2031-RA | 1358..2214 | 873..17 | 4285 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:17:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5818891..5819644 | 17..770 | 3770 | 100 | Plus |
| 3R | 32079331 | 3R | 5819699..5819801 | 771..873 | 515 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 17:17:23 has no hits.
BS06235.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:46 Download gff for
BS06235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hpr1-PA | 1251..2106 | 17..872 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:42 Download gff for
BS06235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2031-PA | 1251..2106 | 17..872 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:49:41 Download gff for
BS06235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hpr1-RA | 1359..2214 | 17..872 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:37 Download gff for
BS06235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hpr1-RA | 1359..2214 | 17..872 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:37 Download gff for
BS06235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5818891..5819644 | 17..770 | 100 | <- | Plus |
| 3R | 5819699..5819800 | 771..872 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:49:41 Download gff for
BS06235.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1644613..1645366 | 17..770 | 100 | <- | Plus |
| arm_3R | 1645421..1645522 | 771..872 | 100 | | Plus |
BS06235.5prime Sequence
845 bp (726 high quality bases) assembled on 2005-12-03
> BS06235.5prime
GAAGTTATCAGTCGACATGAGCACCGCCGTAGAAGTGGCTAACACGGCTC
CGGAGAAGTTGGCCAACTACTTTGCGCTACAGTCGGCGTTTGAGAAAGCC
CTTGAATTGGCCATCACCGACGGCAAAGTGGAGCTGTTGGTCAAGGAGTA
CAATAGATTCCCGGCCAACACCGAGCACGACAAGCGCTTACCCATGGACC
ACGCGTTCCGCGTGCTCCTGATGAAGCGGCTGGACGAAGATGTGAGTCGC
ATTGGAGAGCTTGTACGCCTCTCCGTGGAAGCCACGCGGGCCGAGATTGT
GTCCAACACCATACCCGTGGTTCTGCTGATCGACACCTTCGACGTGGTCA
CTCTGGACAAGTGCCAGAAGATATTTCAGTTTGTCGAGGATATGGTGGAG
GTGTGGAAGGAGGAGATCTTCTTTTCCTCATGCAAGAACAACATTCTACG
CATGTGCAACGACCTGCTGCGTCGACTTTCGCGCACCCAGAACACCGTCT
TCTGTGGCCGCATCCAGCTTTTCCTCTCAAAGTTCTTTCCCTTTTCGGAG
CGGTCTGGCCTCAACATCGTCTCCGAATTCAACCTGGACAACTTTACGGA
GTACGGTCTGGACAGCAAAGACCACGACGAAAGCGACAACAAGGAGCTGG
AGGATACCGCTGAGGACATCCCCCTAAAGATCGACTACGACCTGTACTGC
AAGTTTTGGTCGCTGCAGGACTTTTTCCGAAATCCCAACCAGTGTTACAA
TAAGCCGCAGTGGAAGATGTTCCAGATGCACGCTGACAACATACTACAGT
CCTTCTCGAGCTTCAAGCTGGAAGACGTGCGCCAAAGTAGCAACG
BS06235.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2031-PA | 2106 | Hpr1-RA | 1..829 | 17..845 | 4145 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 23:02:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hpr1-RA | 2311 | CG2031-RA | 109..937 | 17..845 | 4145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 23:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5820504..5821193 | 778..89 | 3435 | 99.9 | Minus |
| 3R | 32079331 | 3R | 5821255..5821332 | 94..17 | 390 | 100 | Minus |
| 3R | 32079331 | 3R | 5820280..5820347 | 845..778 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 23:02:35 has no hits.
BS06235.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:47 Download gff for
BS06235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hpr1-PA | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:44 Download gff for
BS06235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2031-PA | 1..829 | 17..845 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 08:29:45 Download gff for
BS06235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hpr1-RA | 98..937 | 5..845 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 00:51:16 Download gff for
BS06235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hpr1-RA | 98..937 | 5..845 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 00:51:16 Download gff for
BS06235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5820280..5820346 | 779..845 | 100 | <- | Minus |
| 3R | 5820504..5821187 | 95..778 | 100 | <- | Minus |
| 3R | 5821255..5821342 | 5..94 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 08:29:45 Download gff for
BS06235.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1646002..1646068 | 779..845 | 100 | <- | Minus |
| arm_3R | 1646226..1646909 | 95..778 | 100 | <- | Minus |
| arm_3R | 1646977..1647064 | 5..94 | 94 | | Minus |
BS06235.pep Sequence
Translation from 16 to 2121
> BS06235.pep
MSTAVEVANTAPEKLANYFALQSAFEKALELAITDGKVELLVKEYNRFPA
NTEHDKRLPMDHAFRVLLMKRLDEDVSRIGELVRLSVEATRAEIVSNTIP
VVLLIDTFDVVTLDKCQKIFQFVEDMVEVWKEEIFFSSCKNNILRMCNDL
LRRLSRTQNTVFCGRIQLFLSKFFPFSERSGLNIVSEFNLDNFTEYGLDS
KDHDESDNKELEDTAEDIPLKIDYDLYCKFWSLQDFFRNPNQCYNKPQWK
MFQMHADNILQSFSSFKLEDVRQSSNENASGTDQAMDVDEEAVDTTAVSS
VIKANHFFAKFLTNPKLLALQLSDANFRRAVLVQFLILFQYLQVSVKFKS
DTQTLTADQADFIKETESRVYKLLEETPPYGKRFSRTVYHMLAREEMWNN
WKNEGCKEFKKPEEPTLSEEDSKPTPNKRPRRPLGDALRDASRSGKFYLG
NDNLTRLWNYSPDNLQACKSEQRNFLPLLETYLETPHEKVDPAFEWRALR
LLARQTPHFFTSLSQPSSKISDYLEQVRKRLIRDKEPKPAALLSNNSSEN
NFGLSVNNVHTEGEQDATVALQDGEPEQDLEVEDNEPVVEEVDEVPAHEK
PLMVTKEHIEEVAPLIGEPWMKVGKKIGFTNDELLFFQMEHPTANVACVK
MLTNWISDDDDATLENWAYMLEGLEMNKAAEAVKAIIEREKSGSTAAFCL
R*
BS06235.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 01:52:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hpr1-PA | 701 | CG2031-PA | 1..701 | 1..701 | 3650 | 100 | Plus |
