Clone Sequence Records
BS06238.3prime Sequence
615 bp (614 high quality bases) assembled on 2005-12-03
> BS06238.3prime
ATGGTCTAGAAAGCTTCTACGAGTTCTTCTTTGATCCACCGAAGCCGGAG
AAGCCCATGATGGCGGCCATGTCGTCGGGCATGCCGCCGGACTCGAAGTC
CGTGTCCTCGGCCTTGCGCTTCCGCTCTTTTCGCTTCTCCTTGCGGTGTT
CCTTGTAGCGATCCTCCTCCTCCTTGGCCTCCCGCAGGCGGCGCTCGAGC
TCGTAGTCTTTCTGCTTCTCCTCCATCTTCTTCTTGTTCTGCTGGAAGCG
CTCCTTTACCTGGTCGACGGTGCTCCGCTCCACCTTCATGGACATGCCCA
GATTGCGCTGGTGCTTCTTGCCATTGATGTGGTCCAGAAAGTTGATGGAA
TCCTTGACCACGCAGTCGCAAACGTTGCAGTAATAGCCACCGGATTGCGA
GGTGGGTGTGTTCTTGTTGATGACAACGCTCTTGCCCAGCTTGCTGTCCA
GGTCCACCTTATAGTCGCGTCGCTTGAGGTTCTCCCGCTGTACGGGTTCT
TCTTCCTTGGGTGCCACCTGGTTGAGCAGCCGCTCCGCCGCCAGCTTCTC
GTACTCGTTCTTGTCCCATTTCCTTCGGTGGTCATCAGGTCGCATCGTCA
TGTCGACTGATAACT
BS06238.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11586-PA | 585 | CG11586-RA | 1..585 | 601..17 | 2925 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:35:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11586-RB | 760 | CG11586-RB | 104..689 | 602..17 | 2930 | 100 | Minus |
CG11586-RA | 1115 | CG11586-RA | 104..689 | 602..17 | 2930 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:35:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4261723..4262206 | 17..500 | 2420 | 100 | Plus |
3L | 28110227 | 3L | 4262264..4262367 | 499..602 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 04:35:50 has no hits.
BS06238.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:51 Download gff for
BS06238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-PA | 1..585 | 17..601 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:48 Download gff for
BS06238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-PA | 1..585 | 17..601 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:06:26 Download gff for
BS06238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-RA | 104..694 | 12..602 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:46 Download gff for
BS06238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-RA | 104..694 | 12..602 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:46 Download gff for
BS06238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4262264..4262367 | 499..602 | 100 | | Plus |
3L | 4261718..4262204 | 12..498 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:06:26 Download gff for
BS06238.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4261718..4262204 | 12..498 | 99 | <- | Plus |
arm_3L | 4262264..4262367 | 499..602 | 100 | | Plus |
BS06238.5prime Sequence
615 bp (614 high quality bases) assembled on 2005-12-03
> BS06238.5prime
GAAGTTATCAGTCGACATGACGATGCGACCTGATGACCACCGAAGGAAAT
GGGACAAGAACGAGTACGAGAAGCTGGCGGCGGAGCGGCTGCTCAACCAG
GTGGCACCCAAGGAAGAAGAACCCGTACAGCGGGAGAACCTCAAGCGACG
CGACTATAAGGTGGACCTGGACAGCAAGCTGGGCAAGAGCGTTGTCATCA
ACAAGAACACACCCACCTCGCAATCCGGTGGCTATTACTGCAACGTTTGC
GACTGCGTGGTCAAGGATTCCATCAACTTTCTGGACCACATCAATGGCAA
GAAGCACCAGCGCAATCTGGGCATGTCCATGAAGGTGGAGCGGAGCACCG
TCGACCAGGTAAAGGAGCGCTTCCAGCAGAACAAGAAGAAGATGGAGGAG
AAGCAGAAAGACTACGAGCTCGAGCGCCGCCTGCGGGAGGCCAAGGAGGA
GGAGGATCGCTACAAGGAACACCGCAAGGAGAAGCGAAAAGAGCGGAAGC
GCAAGGCCGAGGACACGGACTTCGAGTCCGGCGGCATGCCCGACGACATG
GCCGCCATCATGGGCTTCTCCGGCTTCGGTGGATCAAAGAAGAACTCGTA
GAAGCTTTCTAGACC
BS06238.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11586-PA | 585 | CG11586-RA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11586-RB | 760 | CG11586-RB | 104..689 | 16..601 | 2930 | 100 | Plus |
CG11586-RA | 1115 | CG11586-RA | 104..689 | 16..601 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4261723..4262206 | 601..118 | 2420 | 100 | Minus |
3L | 28110227 | 3L | 4262264..4262367 | 119..16 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 04:47:43 has no hits.
BS06238.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:52 Download gff for
BS06238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-PA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:49 Download gff for
BS06238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-PA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:10:37 Download gff for
BS06238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-RA | 104..694 | 16..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:36 Download gff for
BS06238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-RA | 104..694 | 16..606 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:36 Download gff for
BS06238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4261718..4262204 | 120..606 | 99 | <- | Minus |
3L | 4262264..4262367 | 16..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:10:37 Download gff for
BS06238.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4261718..4262204 | 120..606 | 99 | <- | Minus |
arm_3L | 4262264..4262367 | 16..119 | 100 | | Minus |
BS06238.complete Sequence
617 bp (617 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635408
> BS06238.complete
GAAGTTATCAGTCGACATGACGATGCGACCTGATGACCACCGAAGGAAAT
GGGACAAGAACGAGTACGAGAAGCTGGCGGCGGAGCGGCTGCTCAACCAG
GTGGCACCCAAGGAAGAAGAACCCGTACAGCGGGAGAACCTCAAGCGACG
CGACTATAAGGTGGACCTGGACAGCAAGCTGGGCAAGAGCGTTGTCATCA
ACAAGAACACACCCACCTCGCAATCCGGTGGCTATTACTGCAACGTTTGC
GACTGCGTGGTCAAGGATTCCATCAACTTTCTGGACCACATCAATGGCAA
GAAGCACCAGCGCAATCTGGGCATGTCCATGAAGGTGGAGCGGAGCACCG
TCGACCAGGTAAAGGAGCGCTTCCAGCAGAACAAGAAGAAGATGGAGGAG
AAGCAGAAAGACTACGAGCTCGAGCGCCGCCTGCGGGAGGCCAAGGAGGA
GGAGGATCGCTACAAGGAACACCGCAAGGAGAAGCGAAAAGAGCGGAAGC
GCAAGGCCGAGGACACGGACTTCGAGTCCGGCGGCATGCCCGACGACATG
GCCGCCATCATGGGCTTCTCCGGCTTCGGTGGATCAAAGAAGAACTCGTA
GAAGCTTTCTAGACCAT
BS06238.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:33:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11586-RB | 585 | CG11586-PB | 1..585 | 17..601 | 2925 | 100 | Plus |
CG11586-RA | 585 | CG11586-PA | 1..585 | 17..601 | 2925 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:33:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11586-RB | 760 | CG11586-RB | 104..689 | 16..601 | 2930 | 100 | Plus |
CG11586-RA | 1115 | CG11586-RA | 104..689 | 16..601 | 2930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:33:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 4261723..4262206 | 601..118 | 2420 | 100 | Minus |
3L | 28110227 | 3L | 4262264..4262367 | 119..16 | 520 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:33:30 has no hits.
BS06238.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:20 Download gff for
BS06238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-RA | 1..585 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:57 Download gff for
BS06238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-RA | 95..685 | 16..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:56 Download gff for
BS06238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-RA | 105..689 | 17..601 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:20 Download gff for
BS06238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-RA | 95..685 | 16..606 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:59 Download gff for
BS06238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11586-RA | 105..689 | 17..601 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:59 Download gff for
BS06238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 4261723..4262204 | 120..601 | 100 | <- | Minus |
3L | 4262264..4262366 | 17..119 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:56 Download gff for
BS06238.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 4261723..4262204 | 120..601 | 100 | <- | Minus |
arm_3L | 4262264..4262366 | 17..119 | 100 | | Minus |
BS06238.pep Sequence
Translation from 16 to 600
> BS06238.pep
MTMRPDDHRRKWDKNEYEKLAAERLLNQVAPKEEEPVQRENLKRRDYKVD
LDSKLGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRN
LGMSMKVERSTVDQVKERFQQNKKKMEEKQKDYELERRLREAKEEEDRYK
EHRKEKRKERKRKAEDTDFESGGMPDDMAAIMGFSGFGGSKKNS*
BS06238.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11586-PB | 194 | CG11586-PB | 1..194 | 1..194 | 1022 | 100 | Plus |
CG11586-PA | 194 | CG11586-PA | 1..194 | 1..194 | 1022 | 100 | Plus |