Clone BS06238 Report

Search the DGRC for BS06238

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:38
Vector:pDNR-Dual
Associated Gene/TranscriptCG11586-RA
Protein status:BS06238.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06238.3prime Sequence

615 bp (614 high quality bases) assembled on 2005-12-03

> BS06238.3prime
ATGGTCTAGAAAGCTTCTACGAGTTCTTCTTTGATCCACCGAAGCCGGAG
AAGCCCATGATGGCGGCCATGTCGTCGGGCATGCCGCCGGACTCGAAGTC
CGTGTCCTCGGCCTTGCGCTTCCGCTCTTTTCGCTTCTCCTTGCGGTGTT
CCTTGTAGCGATCCTCCTCCTCCTTGGCCTCCCGCAGGCGGCGCTCGAGC
TCGTAGTCTTTCTGCTTCTCCTCCATCTTCTTCTTGTTCTGCTGGAAGCG
CTCCTTTACCTGGTCGACGGTGCTCCGCTCCACCTTCATGGACATGCCCA
GATTGCGCTGGTGCTTCTTGCCATTGATGTGGTCCAGAAAGTTGATGGAA
TCCTTGACCACGCAGTCGCAAACGTTGCAGTAATAGCCACCGGATTGCGA
GGTGGGTGTGTTCTTGTTGATGACAACGCTCTTGCCCAGCTTGCTGTCCA
GGTCCACCTTATAGTCGCGTCGCTTGAGGTTCTCCCGCTGTACGGGTTCT
TCTTCCTTGGGTGCCACCTGGTTGAGCAGCCGCTCCGCCGCCAGCTTCTC
GTACTCGTTCTTGTCCCATTTCCTTCGGTGGTCATCAGGTCGCATCGTCA
TGTCGACTGATAACT

BS06238.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG11586-PA 585 CG11586-RA 1..585 601..17 2925 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:35:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG11586-RB 760 CG11586-RB 104..689 602..17 2930 100 Minus
CG11586-RA 1115 CG11586-RA 104..689 602..17 2930 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:35:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4261723..4262206 17..500 2420 100 Plus
3L 28110227 3L 4262264..4262367 499..602 520 100 Plus
Blast to na_te.dros performed on 2015-02-12 04:35:50 has no hits.

BS06238.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:51 Download gff for BS06238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-PA 1..585 17..601 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:48 Download gff for BS06238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-PA 1..585 17..601 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 23:06:26 Download gff for BS06238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 104..694 12..602 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:03:46 Download gff for BS06238.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 104..694 12..602 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:03:46 Download gff for BS06238.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 4262264..4262367 499..602 100   Plus
3L 4261718..4262204 12..498 99 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 23:06:26 Download gff for BS06238.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4261718..4262204 12..498 99 <- Plus
arm_3L 4262264..4262367 499..602 100   Plus

BS06238.5prime Sequence

615 bp (614 high quality bases) assembled on 2005-12-03

> BS06238.5prime
GAAGTTATCAGTCGACATGACGATGCGACCTGATGACCACCGAAGGAAAT
GGGACAAGAACGAGTACGAGAAGCTGGCGGCGGAGCGGCTGCTCAACCAG
GTGGCACCCAAGGAAGAAGAACCCGTACAGCGGGAGAACCTCAAGCGACG
CGACTATAAGGTGGACCTGGACAGCAAGCTGGGCAAGAGCGTTGTCATCA
ACAAGAACACACCCACCTCGCAATCCGGTGGCTATTACTGCAACGTTTGC
GACTGCGTGGTCAAGGATTCCATCAACTTTCTGGACCACATCAATGGCAA
GAAGCACCAGCGCAATCTGGGCATGTCCATGAAGGTGGAGCGGAGCACCG
TCGACCAGGTAAAGGAGCGCTTCCAGCAGAACAAGAAGAAGATGGAGGAG
AAGCAGAAAGACTACGAGCTCGAGCGCCGCCTGCGGGAGGCCAAGGAGGA
GGAGGATCGCTACAAGGAACACCGCAAGGAGAAGCGAAAAGAGCGGAAGC
GCAAGGCCGAGGACACGGACTTCGAGTCCGGCGGCATGCCCGACGACATG
GCCGCCATCATGGGCTTCTCCGGCTTCGGTGGATCAAAGAAGAACTCGTA
GAAGCTTTCTAGACC

BS06238.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11586-PA 585 CG11586-RA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:47:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG11586-RB 760 CG11586-RB 104..689 16..601 2930 100 Plus
CG11586-RA 1115 CG11586-RA 104..689 16..601 2930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 04:47:41
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4261723..4262206 601..118 2420 100 Minus
3L 28110227 3L 4262264..4262367 119..16 520 100 Minus
Blast to na_te.dros performed on 2015-02-12 04:47:43 has no hits.

BS06238.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:52 Download gff for BS06238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-PA 1..585 17..601 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:49 Download gff for BS06238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-PA 1..585 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 03:10:37 Download gff for BS06238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 104..694 16..606 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 07:14:36 Download gff for BS06238.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 104..694 16..606 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 07:14:36 Download gff for BS06238.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 4261718..4262204 120..606 99 <- Minus
3L 4262264..4262367 16..119 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 03:10:37 Download gff for BS06238.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4261718..4262204 120..606 99 <- Minus
arm_3L 4262264..4262367 16..119 100   Minus

BS06238.complete Sequence

617 bp (617 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635408

> BS06238.complete
GAAGTTATCAGTCGACATGACGATGCGACCTGATGACCACCGAAGGAAAT
GGGACAAGAACGAGTACGAGAAGCTGGCGGCGGAGCGGCTGCTCAACCAG
GTGGCACCCAAGGAAGAAGAACCCGTACAGCGGGAGAACCTCAAGCGACG
CGACTATAAGGTGGACCTGGACAGCAAGCTGGGCAAGAGCGTTGTCATCA
ACAAGAACACACCCACCTCGCAATCCGGTGGCTATTACTGCAACGTTTGC
GACTGCGTGGTCAAGGATTCCATCAACTTTCTGGACCACATCAATGGCAA
GAAGCACCAGCGCAATCTGGGCATGTCCATGAAGGTGGAGCGGAGCACCG
TCGACCAGGTAAAGGAGCGCTTCCAGCAGAACAAGAAGAAGATGGAGGAG
AAGCAGAAAGACTACGAGCTCGAGCGCCGCCTGCGGGAGGCCAAGGAGGA
GGAGGATCGCTACAAGGAACACCGCAAGGAGAAGCGAAAAGAGCGGAAGC
GCAAGGCCGAGGACACGGACTTCGAGTCCGGCGGCATGCCCGACGACATG
GCCGCCATCATGGGCTTCTCCGGCTTCGGTGGATCAAAGAAGAACTCGTA
GAAGCTTTCTAGACCAT

BS06238.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:33:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11586-RB 585 CG11586-PB 1..585 17..601 2925 100 Plus
CG11586-RA 585 CG11586-PA 1..585 17..601 2925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:33:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG11586-RB 760 CG11586-RB 104..689 16..601 2930 100 Plus
CG11586-RA 1115 CG11586-RA 104..689 16..601 2930 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:33:29
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 4261723..4262206 601..118 2420 100 Minus
3L 28110227 3L 4262264..4262367 119..16 520 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:33:30 has no hits.

BS06238.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:20 Download gff for BS06238.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 1..585 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:57 Download gff for BS06238.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 95..685 16..606 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:03:56 Download gff for BS06238.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 105..689 17..601 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:20 Download gff for BS06238.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 95..685 16..606 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:21:59 Download gff for BS06238.complete
Subject Subject Range Query Range Percent Splice Strand
CG11586-RA 105..689 17..601 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:21:59 Download gff for BS06238.complete
Subject Subject Range Query Range Percent Splice Strand
3L 4261723..4262204 120..601 100 <- Minus
3L 4262264..4262366 17..119 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:03:56 Download gff for BS06238.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 4261723..4262204 120..601 100 <- Minus
arm_3L 4262264..4262366 17..119 100   Minus

BS06238.pep Sequence

Translation from 16 to 600

> BS06238.pep
MTMRPDDHRRKWDKNEYEKLAAERLLNQVAPKEEEPVQRENLKRRDYKVD
LDSKLGKSVVINKNTPTSQSGGYYCNVCDCVVKDSINFLDHINGKKHQRN
LGMSMKVERSTVDQVKERFQQNKKKMEEKQKDYELERRLREAKEEEDRYK
EHRKEKRKERKRKAEDTDFESGGMPDDMAAIMGFSGFGGSKKNS*

BS06238.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:03:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG11586-PB 194 CG11586-PB 1..194 1..194 1022 100 Plus
CG11586-PA 194 CG11586-PA 1..194 1..194 1022 100 Plus