Clone Sequence Records
BS06240.3prime Sequence
765 bp (764 high quality bases) assembled on 2005-12-03
> BS06240.3prime
ATGGTCTAGAAAGCTTTCAGAGCTCGTCATCCATGTTGAAGTCTTCCGGC
GGAAAGTCACCAACCGTAACGGATAATGGTGATACAAAGCCGCCGTAATT
TGGGGCACACGTAAAGTAGGCCTTTCCACCGAAACTTCCATTATTTTTCC
CCAGTGGTTCGTCGTATTCCACTCCAATAAAGTGACCACTTTTCCCTTCG
AGCGGACCATTGTATCGGATTGTTCCTCGTCGTGTTGGATTACCTGGAAC
CGTAACCTCACATCTGCCACCCAGTACACAAAGTTCCGCCCGTTTTTGGA
TCTCCTCCGCCTGAAGGCGCTTCTTCTCCTCCGCCTGTTGCATCTCCTCA
TCGTTGTACTTGCCCATGCGATTAATCTTGAGGTAGTTGCGCACAGAATC
TGTTCGCTGTTCGTACTGATCTTTGGACAGTTCGAATTTCTCAACGGGAG
CGCTGTCGAACGAGAAGGTAGCAAAGCTATCGACGACATGCAGCCGGAGT
CCATCACTGTTGGCATAGTAACCCAGTTGGGCGTCATTGTTGTCCATTGT
GGACACGCAGGTGTCACCCTTGAAGACCTGCACCTTCATGGTACCGGCAC
ATCCGCCCGTCAGTATCTCAAGTTTGGTCTTGAGCTGGGCAACTGTTAGA
TCCTTGGCTAACTTGACCTCGAAGGCGACTGCATCATTGTGAGAGTTGGA
AACATTCACCTTGATGAAATCTGACTTGCCGGTTTCAATTATAGTCGACA
TGTCGACTGATAACT
BS06240.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11242-PA | 735 | CG11242-RA | 1..735 | 751..17 | 3675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:45:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TBCB-RA | 1166 | CG11242-RA | 123..857 | 751..17 | 3675 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:45:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19486167..19486542 | 255..630 | 1880 | 100 | Plus |
2R | 25286936 | 2R | 19485983..19486106 | 135..258 | 620 | 100 | Plus |
2R | 25286936 | 2R | 19486593..19486715 | 629..751 | 615 | 100 | Plus |
2R | 25286936 | 2R | 19485803..19485922 | 17..136 | 600 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-06 12:45:19 has no hits.
BS06240.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:55 Download gff for
BS06240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11242-PA | 1..735 | 17..751 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:54 Download gff for
BS06240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11242-PA | 1..735 | 17..751 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:46:25 Download gff for
BS06240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TBCB-RA | 116..857 | 17..758 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:54:07 Download gff for
BS06240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TBCB-RA | 116..857 | 17..758 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:54:07 Download gff for
BS06240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19485803..19485920 | 17..134 | 100 | <- | Plus |
2R | 19485983..19486104 | 135..256 | 100 | <- | Plus |
2R | 19486169..19486540 | 257..628 | 100 | <- | Plus |
2R | 19486593..19486722 | 629..758 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:46:25 Download gff for
BS06240.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15373674..15374045 | 257..628 | 100 | <- | Plus |
arm_2R | 15373308..15373425 | 17..134 | 100 | <- | Plus |
arm_2R | 15373488..15373609 | 135..256 | 100 | <- | Plus |
arm_2R | 15374098..15374227 | 629..758 | 97 | | Plus |
BS06240.5prime Sequence
765 bp (748 high quality bases) assembled on 2005-12-03
> BS06240.5prime
GAAGTTATCAGTCGACATGTCGACTATAATTGAAACCGGCAAGTCAGATT
TCATCAAGGTGAATGTTTCCAACTCTCACAATGATGCAGTCGCCTTCGAG
GTCAAGTTAGCCAAGGATCTAACAGTTGCCCAGCTCAAGACCAAACTTGA
GATACTGACGGGCGGATGTGCCGGTACCATGAAGGTGCAGGTCTTCAAGG
GTGACACCTGCGTGTCCACAATGGACAACAATGACGCCCAACTGGGTTAC
TATGCCAACAGTGATGGACTCCGGCTGCATGTCGTCGATAGCTTTGCTAC
CTTCTCGTTCGACAGCGCTCCCGTTGAGAAATTCGAACTGTCCAAAGATC
AGTACGAACAGCGAACAGATTCTGTGCGCAACTACCTCAAGATTAATCGC
ATGGGCAAGTACAACGATGAGGAGATGCAACAGGCGGAGGAGAAGAAGCG
CCTTCAGGCGGAGGAGATCCAAAAACGGGCGGAACTTTGTGTACTGGGTG
GCAGATGTGAGGTTACGGTTCCAGGTAATCCAACACGACGAGGAACAATC
CGATACAATGGTCCGCTCGAAGGGAAAAGTGGTCACTTTATTGGAGTGGA
ATACGACGAACCACTGGGGAAAAATAATGGAAGTTTCGGTGGAAAGGCCT
ACTTTACGTGTGCCCCAAATTACGGCGGCTTTGTATCACCATTATCCGTT
ACGGTTGGTGACTTTCCGCCGGAAGACTTCAACATGGATGACGAGCTCTG
AAAGCTTTCTAGACC
BS06240.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11242-PA | 735 | CG11242-RA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:14:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TBCB-RA | 1166 | CG11242-RA | 123..857 | 17..751 | 3675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:14:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19486167..19486542 | 513..138 | 1880 | 100 | Minus |
2R | 25286936 | 2R | 19485983..19486106 | 633..510 | 620 | 100 | Minus |
2R | 25286936 | 2R | 19486593..19486715 | 139..17 | 615 | 100 | Minus |
2R | 25286936 | 2R | 19485803..19485922 | 751..632 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:14:34 has no hits.
BS06240.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:56 Download gff for
BS06240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11242-PA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:55 Download gff for
BS06240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11242-PA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:32:20 Download gff for
BS06240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TBCB-RA | 116..857 | 10..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:00 Download gff for
BS06240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TBCB-RA | 116..857 | 10..751 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:00 Download gff for
BS06240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19485803..19485920 | 634..751 | 100 | <- | Minus |
2R | 19485983..19486104 | 512..633 | 100 | <- | Minus |
2R | 19486169..19486540 | 140..511 | 100 | <- | Minus |
2R | 19486593..19486722 | 10..139 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:32:20 Download gff for
BS06240.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15373308..15373425 | 634..751 | 100 | <- | Minus |
arm_2R | 15373488..15373609 | 512..633 | 100 | <- | Minus |
arm_2R | 15373674..15374045 | 140..511 | 100 | <- | Minus |
arm_2R | 15374098..15374227 | 10..139 | 97 | | Minus |
BS06240.complete Sequence
767 bp (767 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635409
> BS06240.complete
GAAGTTATCAGTCGACATGTCGACTATAATTGAAACCGGCAAGTCAGATT
TCATCAAGGTGAATGTTTCCAACTCTCACAATGATGCAGTCGCCTTCGAG
GTCAAGTTAGCCAAGGATCTAACAGTTGCCCAGCTCAAGACCAAACTTGA
GATACTGACGGGCGGATGTGCCGGTACCATGAAGGTGCAGGTCTTCAAGG
GTGACACCTGCGTGTCCACAATGGACAACAATGACGCCCAACTGGGTTAC
TATGCCAACAGTGATGGACTCCGGCTGCATGTCGTCGATAGCTTTGCTAC
CTTCTCGTTCGACAGCGCTCCCGTTGAGAAATTCGAACTGTCCAAAGATC
AGTACGAACAGCGAACAGATTCTGTGCGCAACTACCTCAAGATTAATCGC
ATGGGCAAGTACAACGATGAGGAGATGCAACAGGCGGAGGAGAAGAAGCG
CCTTCAGGCGGAGGAGATCCAAAAACGGGCGGAACTTTGTGTACTGGGTG
GCAGATGTGAGGTTACGGTTCCAGGTAATCCAACACGACGAGGAACAATC
CGATACAATGGTCCGCTCGAAGGGAAAAGTGGTCACTTTATTGGAGTGGA
ATACGACGAACCACTGGGGAAAAATAATGGAAGTTTCGGTGGAAAGGCCT
ACTTTACGTGTGCCCCAAATTACGGCGGCTTTGTATCACCATTATCCGTT
ACGGTTGGTGACTTTCCGCCGGAAGACTTCAACATGGATGACGAGCTCTG
AAAGCTTTCTAGACCAT
BS06240.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:22:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TBCB-RA | 735 | CG11242-PA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TBCB-RA | 1166 | CG11242-RA | 123..857 | 17..751 | 3675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 19486167..19486542 | 513..138 | 1880 | 100 | Minus |
2R | 25286936 | 2R | 19485983..19486106 | 633..510 | 620 | 100 | Minus |
2R | 25286936 | 2R | 19486593..19486715 | 139..17 | 615 | 100 | Minus |
2R | 25286936 | 2R | 19485803..19485922 | 751..632 | 600 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:22:05 has no hits.
BS06240.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:18 Download gff for
BS06240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11242-RA | 1..735 | 17..751 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:54 Download gff for
BS06240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11242-RA | 114..855 | 10..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:05 Download gff for
BS06240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TBCB-RA | 123..856 | 17..750 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:19 Download gff for
BS06240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11242-RA | 114..855 | 10..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:22 Download gff for
BS06240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
TBCB-RA | 123..856 | 17..750 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:22 Download gff for
BS06240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 19486593..19486715 | 17..139 | 100 | | Minus |
2R | 19485804..19485920 | 634..750 | 100 | <- | Minus |
2R | 19485983..19486104 | 512..633 | 100 | <- | Minus |
2R | 19486169..19486540 | 140..511 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:05 Download gff for
BS06240.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 15373309..15373425 | 634..750 | 100 | <- | Minus |
arm_2R | 15373488..15373609 | 512..633 | 100 | <- | Minus |
arm_2R | 15373674..15374045 | 140..511 | 100 | <- | Minus |
arm_2R | 15374098..15374220 | 17..139 | 100 | | Minus |
BS06240.pep Sequence
Translation from 16 to 750
> BS06240.pep
MSTIIETGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGG
CAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVDSFATFSFDS
APVEKFELSKDQYEQRTDSVRNYLKINRMGKYNDEEMQQAEEKKRLQAEE
IQKRAELCVLGGRCEVTVPGNPTRRGTIRYNGPLEGKSGHFIGVEYDEPL
GKNNGSFGGKAYFTCAPNYGGFVSPLSVTVGDFPPEDFNMDDEL*
BS06240.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:23:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
TBCB-PA | 244 | CG11242-PA | 1..244 | 1..244 | 1280 | 100 | Plus |