Clone BS06240 Report

Search the DGRC for BS06240

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptTBCB-RA
Protein status:BS06240.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06240.3prime Sequence

765 bp (764 high quality bases) assembled on 2005-12-03

> BS06240.3prime
ATGGTCTAGAAAGCTTTCAGAGCTCGTCATCCATGTTGAAGTCTTCCGGC
GGAAAGTCACCAACCGTAACGGATAATGGTGATACAAAGCCGCCGTAATT
TGGGGCACACGTAAAGTAGGCCTTTCCACCGAAACTTCCATTATTTTTCC
CCAGTGGTTCGTCGTATTCCACTCCAATAAAGTGACCACTTTTCCCTTCG
AGCGGACCATTGTATCGGATTGTTCCTCGTCGTGTTGGATTACCTGGAAC
CGTAACCTCACATCTGCCACCCAGTACACAAAGTTCCGCCCGTTTTTGGA
TCTCCTCCGCCTGAAGGCGCTTCTTCTCCTCCGCCTGTTGCATCTCCTCA
TCGTTGTACTTGCCCATGCGATTAATCTTGAGGTAGTTGCGCACAGAATC
TGTTCGCTGTTCGTACTGATCTTTGGACAGTTCGAATTTCTCAACGGGAG
CGCTGTCGAACGAGAAGGTAGCAAAGCTATCGACGACATGCAGCCGGAGT
CCATCACTGTTGGCATAGTAACCCAGTTGGGCGTCATTGTTGTCCATTGT
GGACACGCAGGTGTCACCCTTGAAGACCTGCACCTTCATGGTACCGGCAC
ATCCGCCCGTCAGTATCTCAAGTTTGGTCTTGAGCTGGGCAACTGTTAGA
TCCTTGGCTAACTTGACCTCGAAGGCGACTGCATCATTGTGAGAGTTGGA
AACATTCACCTTGATGAAATCTGACTTGCCGGTTTCAATTATAGTCGACA
TGTCGACTGATAACT

BS06240.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11242-PA 735 CG11242-RA 1..735 751..17 3675 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-06 12:45:24
Subject Length Description Subject Range Query Range Score Percent Strand
TBCB-RA 1166 CG11242-RA 123..857 751..17 3675 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-06 12:45:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19486167..19486542 255..630 1880 100 Plus
2R 25286936 2R 19485983..19486106 135..258 620 100 Plus
2R 25286936 2R 19486593..19486715 629..751 615 100 Plus
2R 25286936 2R 19485803..19485922 17..136 600 100 Plus
Blast to na_te.dros performed on 2015-02-06 12:45:19 has no hits.

BS06240.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:55 Download gff for BS06240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11242-PA 1..735 17..751 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:54 Download gff for BS06240.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11242-PA 1..735 17..751 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-11 08:46:25 Download gff for BS06240.3prime
Subject Subject Range Query Range Percent Splice Strand
TBCB-RA 116..857 17..758 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-06 13:54:07 Download gff for BS06240.3prime
Subject Subject Range Query Range Percent Splice Strand
TBCB-RA 116..857 17..758 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-06 13:54:07 Download gff for BS06240.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 19485803..19485920 17..134 100 <- Plus
2R 19485983..19486104 135..256 100 <- Plus
2R 19486169..19486540 257..628 100 <- Plus
2R 19486593..19486722 629..758 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-11 08:46:25 Download gff for BS06240.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15373674..15374045 257..628 100 <- Plus
arm_2R 15373308..15373425 17..134 100 <- Plus
arm_2R 15373488..15373609 135..256 100 <- Plus
arm_2R 15374098..15374227 629..758 97   Plus

BS06240.5prime Sequence

765 bp (748 high quality bases) assembled on 2005-12-03

> BS06240.5prime
GAAGTTATCAGTCGACATGTCGACTATAATTGAAACCGGCAAGTCAGATT
TCATCAAGGTGAATGTTTCCAACTCTCACAATGATGCAGTCGCCTTCGAG
GTCAAGTTAGCCAAGGATCTAACAGTTGCCCAGCTCAAGACCAAACTTGA
GATACTGACGGGCGGATGTGCCGGTACCATGAAGGTGCAGGTCTTCAAGG
GTGACACCTGCGTGTCCACAATGGACAACAATGACGCCCAACTGGGTTAC
TATGCCAACAGTGATGGACTCCGGCTGCATGTCGTCGATAGCTTTGCTAC
CTTCTCGTTCGACAGCGCTCCCGTTGAGAAATTCGAACTGTCCAAAGATC
AGTACGAACAGCGAACAGATTCTGTGCGCAACTACCTCAAGATTAATCGC
ATGGGCAAGTACAACGATGAGGAGATGCAACAGGCGGAGGAGAAGAAGCG
CCTTCAGGCGGAGGAGATCCAAAAACGGGCGGAACTTTGTGTACTGGGTG
GCAGATGTGAGGTTACGGTTCCAGGTAATCCAACACGACGAGGAACAATC
CGATACAATGGTCCGCTCGAAGGGAAAAGTGGTCACTTTATTGGAGTGGA
ATACGACGAACCACTGGGGAAAAATAATGGAAGTTTCGGTGGAAAGGCCT
ACTTTACGTGTGCCCCAAATTACGGCGGCTTTGTATCACCATTATCCGTT
ACGGTTGGTGACTTTCCGCCGGAAGACTTCAACATGGATGACGAGCTCTG
AAAGCTTTCTAGACC

BS06240.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG11242-PA 735 CG11242-RA 1..735 17..751 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:14:39
Subject Length Description Subject Range Query Range Score Percent Strand
TBCB-RA 1166 CG11242-RA 123..857 17..751 3675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19486167..19486542 513..138 1880 100 Minus
2R 25286936 2R 19485983..19486106 633..510 620 100 Minus
2R 25286936 2R 19486593..19486715 139..17 615 100 Minus
2R 25286936 2R 19485803..19485922 751..632 600 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:14:34 has no hits.

BS06240.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:56 Download gff for BS06240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11242-PA 1..735 17..751 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:55 Download gff for BS06240.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11242-PA 1..735 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 10:32:20 Download gff for BS06240.5prime
Subject Subject Range Query Range Percent Splice Strand
TBCB-RA 116..857 10..751 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:04:00 Download gff for BS06240.5prime
Subject Subject Range Query Range Percent Splice Strand
TBCB-RA 116..857 10..751 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:04:00 Download gff for BS06240.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 19485803..19485920 634..751 100 <- Minus
2R 19485983..19486104 512..633 100 <- Minus
2R 19486169..19486540 140..511 100 <- Minus
2R 19486593..19486722 10..139 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 10:32:20 Download gff for BS06240.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15373308..15373425 634..751 100 <- Minus
arm_2R 15373488..15373609 512..633 100 <- Minus
arm_2R 15373674..15374045 140..511 100 <- Minus
arm_2R 15374098..15374227 10..139 97   Minus

BS06240.complete Sequence

767 bp (767 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635409

> BS06240.complete
GAAGTTATCAGTCGACATGTCGACTATAATTGAAACCGGCAAGTCAGATT
TCATCAAGGTGAATGTTTCCAACTCTCACAATGATGCAGTCGCCTTCGAG
GTCAAGTTAGCCAAGGATCTAACAGTTGCCCAGCTCAAGACCAAACTTGA
GATACTGACGGGCGGATGTGCCGGTACCATGAAGGTGCAGGTCTTCAAGG
GTGACACCTGCGTGTCCACAATGGACAACAATGACGCCCAACTGGGTTAC
TATGCCAACAGTGATGGACTCCGGCTGCATGTCGTCGATAGCTTTGCTAC
CTTCTCGTTCGACAGCGCTCCCGTTGAGAAATTCGAACTGTCCAAAGATC
AGTACGAACAGCGAACAGATTCTGTGCGCAACTACCTCAAGATTAATCGC
ATGGGCAAGTACAACGATGAGGAGATGCAACAGGCGGAGGAGAAGAAGCG
CCTTCAGGCGGAGGAGATCCAAAAACGGGCGGAACTTTGTGTACTGGGTG
GCAGATGTGAGGTTACGGTTCCAGGTAATCCAACACGACGAGGAACAATC
CGATACAATGGTCCGCTCGAAGGGAAAAGTGGTCACTTTATTGGAGTGGA
ATACGACGAACCACTGGGGAAAAATAATGGAAGTTTCGGTGGAAAGGCCT
ACTTTACGTGTGCCCCAAATTACGGCGGCTTTGTATCACCATTATCCGTT
ACGGTTGGTGACTTTCCGCCGGAAGACTTCAACATGGATGACGAGCTCTG
AAAGCTTTCTAGACCAT

BS06240.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:22:06
Subject Length Description Subject Range Query Range Score Percent Strand
TBCB-RA 735 CG11242-PA 1..735 17..751 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:22:07
Subject Length Description Subject Range Query Range Score Percent Strand
TBCB-RA 1166 CG11242-RA 123..857 17..751 3675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:22:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 19486167..19486542 513..138 1880 100 Minus
2R 25286936 2R 19485983..19486106 633..510 620 100 Minus
2R 25286936 2R 19486593..19486715 139..17 615 100 Minus
2R 25286936 2R 19485803..19485922 751..632 600 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:22:05 has no hits.

BS06240.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:10:18 Download gff for BS06240.complete
Subject Subject Range Query Range Percent Splice Strand
CG11242-RA 1..735 17..751 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:49:54 Download gff for BS06240.complete
Subject Subject Range Query Range Percent Splice Strand
CG11242-RA 114..855 10..751 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:05 Download gff for BS06240.complete
Subject Subject Range Query Range Percent Splice Strand
TBCB-RA 123..856 17..750 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:10:19 Download gff for BS06240.complete
Subject Subject Range Query Range Percent Splice Strand
CG11242-RA 114..855 10..751 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:17:22 Download gff for BS06240.complete
Subject Subject Range Query Range Percent Splice Strand
TBCB-RA 123..856 17..750 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:17:22 Download gff for BS06240.complete
Subject Subject Range Query Range Percent Splice Strand
2R 19486593..19486715 17..139 100   Minus
2R 19485804..19485920 634..750 100 <- Minus
2R 19485983..19486104 512..633 100 <- Minus
2R 19486169..19486540 140..511 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:05 Download gff for BS06240.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 15373309..15373425 634..750 100 <- Minus
arm_2R 15373488..15373609 512..633 100 <- Minus
arm_2R 15373674..15374045 140..511 100 <- Minus
arm_2R 15374098..15374220 17..139 100   Minus

BS06240.pep Sequence

Translation from 16 to 750

> BS06240.pep
MSTIIETGKSDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGG
CAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVDSFATFSFDS
APVEKFELSKDQYEQRTDSVRNYLKINRMGKYNDEEMQQAEEKKRLQAEE
IQKRAELCVLGGRCEVTVPGNPTRRGTIRYNGPLEGKSGHFIGVEYDEPL
GKNNGSFGGKAYFTCAPNYGGFVSPLSVTVGDFPPEDFNMDDEL*

BS06240.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:23:41
Subject Length Description Subject Range Query Range Score Percent Strand
TBCB-PA 244 CG11242-PA 1..244 1..244 1280 100 Plus