Clone Sequence Records
BS06241.3prime Sequence
681 bp (680 high quality bases) assembled on 2005-12-03
> BS06241.3prime
ATGGTCTAGAAAGCTTTCACTTCTTGGCGAACGTTATCTTCATGGCGTGC
GTCGGCGTAATCTTGAAGCCCTGCAGCGCCTCCTTGGCGGCATTGCTCTG
CAACTCGGTGGTGAACTCCACAAAGGCGATGTCGTGACGATTCGGCACAA
GACGCACCTCCTTGAAGCCGGGGAACTGATTGAACAGCATGGACAGCATC
ATCTCGTTGGTCTCCTCGGGCAGATTGGTGAGGAAGAGGATCTGGTTCGG
CGGCTGCTCGGTCTGTGCGTTCGGGTTCGAGTTCTCGGCGCTGCTCGGCT
TCTTCTTCTTGTCCTTCTTCTCATCGGTACCCGGCGCTGGTTTTGGTGGC
TTGACCTTCTTGGGGCGCTCCTTGAAGGTACCCTTTATCTTGGCCACAAT
ATCCGAATCGGATTTGGAGTAGGCGATCTGCATGGGCTTGTCGTAGAACG
GGAAGCCCTGCATGGTGCGCAGGGCATTCGAAGCGCTGCCGATCTCCTTG
AAGATCACAAATGCCTGGCCGCGCATTTTGAGCGTTTTTAGGGCCACAAT
GTCCAGAATTTGGCCGAATTGCGAGAAAATCGCATAGAGCGACTTCTTTA
GCTCCTCCTTCTTGATCTTCTCGTTCAGATTGTTGATGTAAATCGTTTGG
TTGGGTAGCATCTCCATGTCGACTGATAACT
BS06241.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4528-PA | 651 | snf-RA | 1..651 | 667..17 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snf-RA | 835 | CG4528-RA | 113..764 | 667..16 | 3260 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5309354..5309707 | 667..314 | 1770 | 100 | Minus |
| X | 23542271 | X | 5310132..5310430 | 314..16 | 1495 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:17:09 has no hits.
BS06241.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:57 Download gff for
BS06241.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-PA | 1..651 | 17..667 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:57 Download gff for
BS06241.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4528-PA | 1..651 | 17..667 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:49:40 Download gff for
BS06241.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 109..771 | 8..675 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:35 Download gff for
BS06241.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 109..771 | 8..675 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:35 Download gff for
BS06241.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5309350..5309706 | 315..675 | 98 | -> | Minus |
| X | 5310132..5310437 | 8..314 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:49:40 Download gff for
BS06241.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5203383..5203739 | 315..675 | 98 | -> | Minus |
| arm_X | 5204165..5204470 | 8..314 | 98 | | Minus |
BS06241.5prime Sequence
681 bp (680 high quality bases) assembled on 2005-12-03
> BS06241.5prime
GAAGTTATCAGTCGACATGGAGATGCTACCCAACCAAACGATTTACATCA
ACAATCTGAACGAGAAGATCAAGAAGGAGGAGCTAAAGAAGTCGCTCTAT
GCGATTTTCTCGCAATTCGGCCAAATTCTGGACATTGTGGCCCTAAAAAC
GCTCAAAATGCGCGGCCAGGCATTTGTGATCTTCAAGGAGATCGGCAGCG
CTTCGAATGCCCTGCGCACCATGCAGGGCTTCCCGTTCTACGACAAGCCC
ATGCAGATCGCCTACTCCAAATCCGATTCGGATATTGTGGCCAAGATAAA
GGGTACCTTCAAGGAGCGCCCCAAGAAGGTCAAGCCACCAAAACCAGCGC
CGGGTACCGATGAGAAGAAGGACAAGAAGAAGAAGCCGAGCAGCGCCGAG
AACTCGAACCCGAACGCACAGACCGAGCAGCCGCCGAACCAGATCCTCTT
CCTCACCAATCTGCCCGAGGAGACCAACGAGATGATGCTGTCCATGCTGT
TCAATCAGTTCCCCGGCTTCAAGGAGGTGCGTCTTGTGCCGAATCGTCAC
GACATCGCCTTTGTGGAGTTCACCACCGAGTTGCAGAGCAATGCCGCCAA
GGAGGCGCTGCAGGGCTTCAAGATTACGCCGACGCACGCCATGAAGATAA
CGTTCGCCAAGAAGTGAAAGCTTTCTAGACC
BS06241.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4528-PA | 651 | snf-RA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 20:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snf-RA | 835 | CG4528-RA | 113..764 | 17..668 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 20:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5309354..5309707 | 17..370 | 1770 | 100 | Plus |
| X | 23542271 | X | 5310132..5310430 | 370..668 | 1495 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 20:29:13 has no hits.
BS06241.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:58 Download gff for
BS06241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-PA | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:58 Download gff for
BS06241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4528-PA | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 02:40:31 Download gff for
BS06241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 109..771 | 9..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 22:39:33 Download gff for
BS06241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 109..771 | 9..676 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 22:39:33 Download gff for
BS06241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5310132..5310437 | 370..676 | 98 | | Plus |
| X | 5309350..5309706 | 9..369 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 02:40:31 Download gff for
BS06241.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5203383..5203739 | 9..369 | 98 | -> | Plus |
| arm_X | 5204165..5204470 | 370..676 | 98 | | Plus |
BS06241.complete Sequence
683 bp (683 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635410
> BS06241.complete
GAAGTTATCAGTCGACATGGAGATGCTACCCAACCAAACGATTTACATCA
ACAATCTGAACGAGAAGATCAAGAAGGAGGAGCTAAAGAAGTCGCTCTAT
GCGATTTTCTCGCAATTCGGCCAAATTCTGGACATTGTGGCCCTAAAAAC
GCTCAAAATGCGCGGCCAGGCATTTGTGATCTTCAAGGAGATCGGCAGCG
CTTCGAATGCCCTGCGCACCATGCAGGGCTTCCCGTTCTACGACAAGCCC
ATGCAGATCGCCTACTCCAAATCCGATTCGGATATTGTGGCCAAGATAAA
GGGTACCTTCAAGGAGCGCCCCAAGAAGGTCAAGCCACCAAAACCAGCGC
CGGGTACCGATGAGAAGAAGGACAAGAAGAAGAAGCCGAGCAGCGCCGAG
AACTCGAACCCGAACGCACAGACCGAGCAGCCGCCGAACCAGATCCTCTT
CCTCACCAATCTGCCCGAGGAGACCAACGAGATGATGCTGTCCATGCTGT
TCAATCAGTTCCCCGGCTTCAAGGAGGTGCGTCTTGTGCCGAATCGTCAC
GACATCGCCTTTGTGGAGTTCACCACCGAGTTGCAGAGCAATGCCGCCAA
GGAGGCGCTGCAGGGCTTCAAGATTACGCCGACGCACGCCATGAAGATAA
CGTTCGCCAAGAAGTGAAAGCTTTCTAGACCAT
BS06241.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snf-RA | 651 | CG4528-PA | 1..651 | 17..667 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:11:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snf-RA | 835 | CG4528-RA | 113..764 | 17..668 | 3260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:11:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 5309354..5309707 | 17..370 | 1770 | 100 | Plus |
| X | 23542271 | X | 5310132..5310430 | 370..668 | 1495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:11:17 has no hits.
BS06241.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:02:23 Download gff for
BS06241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 1..651 | 17..667 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 01:56:14 Download gff for
BS06241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 104..766 | 9..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:08:06 Download gff for
BS06241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 113..762 | 17..666 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:02:23 Download gff for
BS06241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 104..766 | 9..676 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:05:13 Download gff for
BS06241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| snf-RA | 113..762 | 17..666 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:05:13 Download gff for
BS06241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 5310132..5310428 | 370..666 | 100 | | Plus |
| X | 5309354..5309706 | 17..369 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:08:06 Download gff for
BS06241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 5203387..5203739 | 17..369 | 100 | -> | Plus |
| arm_X | 5204165..5204461 | 370..666 | 100 | | Plus |
BS06241.pep Sequence
Translation from 16 to 666
> BS06241.pep
MEMLPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRG
QAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKE
RPKKVKPPKPAPGTDEKKDKKKKPSSAENSNPNAQTEQPPNQILFLTNLP
EETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQG
FKITPTHAMKITFAKK*
BS06241.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 15:23:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| snf-PA | 216 | CG4528-PA | 1..216 | 1..216 | 1104 | 100 | Plus |
