Clone Sequence Records
BS06242.5prime Sequence
603 bp (602 high quality bases) assembled on 2005-12-03
> BS06242.5prime
GAAGTTATCAGTCGACATGCGTGTGCTGTCGTGCAAATTTCTTGGCCGAG
TTGTTAACTCCGCGCTGCCCCAACAAATCATTTCACTGCGATCCCTGTCC
AAAACCAGTGCAGCTATGGTGAAAGTAGGAGACTCCCTGCCATCGGTGGA
TCTGTTCGAGGACTCGCCAGCCAACAAAATCAACACCGGCGATCTCGTCA
ATGGCAAGAAGGTGATCATCTTCGGCGTTCCCGGCGCCTTCACTCCAGGC
TGCTCAAAGACCCACTTGCCCGGCTATGTGAGCTCCGCCGATGAGCTGAA
GTCCAAGCAGGGCGTGGACGAGATTGTCTGCGTTTCGGTCAACGATCCCT
TTGTGATGTCCGCCTGGGGCAAGGAGCACGGAGCCGCGGGCAAGGTGCGC
CTCCTAGCTGATCCCGCCGGCGGTTTCACCAAGGCCCTGGATGTGACCAT
CGATCTGCCACCACTTGGCGGCGTGCGCTCAAAGCGCTACTCGCTGGTGG
TGGAGAACGGCAAGGTGACCGAGCTGAATGTCGAGCCCGATGGCACCGGA
CTCAGCTGCTCGCTGGCCAACAACATTGGCAAGAAGTAAAAGCTTTCTAG
ACC
BS06242.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7217-PA | 573 | CG7217-RA | 1..573 | 17..589 | 2865 | 100 | Plus |
CG7217-PB | 573 | CG7217-RB | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7215-RA | 1449 | CG7215-RA | 753..1326 | 17..590 | 2870 | 100 | Plus |
Prx5-RB | 733 | CG7217-RB | 37..610 | 17..590 | 2870 | 100 | Plus |
Prx5-RA | 1449 | CG7217-RA | 753..1326 | 17..590 | 2870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18165565..18165897 | 590..258 | 1665 | 100 | Minus |
3R | 32079331 | 3R | 18166026..18166160 | 259..125 | 675 | 100 | Minus |
3R | 32079331 | 3R | 18166352..18166462 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:07:53 has no hits.
BS06242.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:00 Download gff for
BS06242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7217-PB | 1..573 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:00 Download gff for
BS06242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7217-PB | 1..573 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:08:04 Download gff for
BS06242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7215-RA | 746..1333 | 10..597 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:33:35 Download gff for
BS06242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx5-RA | 746..1333 | 10..597 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:33:35 Download gff for
BS06242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18165558..18165895 | 260..597 | 98 | <- | Minus |
3R | 18166026..18166160 | 125..259 | 100 | <- | Minus |
3R | 18166355..18166469 | 10..124 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:08:04 Download gff for
BS06242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13991280..13991617 | 260..597 | 98 | <- | Minus |
arm_3R | 13991748..13991882 | 125..259 | 100 | <- | Minus |
arm_3R | 13992077..13992191 | 10..124 | 97 | | Minus |
BS06242.3prime Sequence
603 bp (602 high quality bases) assembled on 2005-12-03
> BS06242.3prime
ATGGTCTAGAAAGCTTTTACTTCTTGCCAATGTTGTTGGCCAGCGAGCAG
CTGAGTCCGGTGCCATCGGGCTCGACATTCAGCTCGGTCACCTTGCCGTT
CTCCACCACCAGCGAGTAGCGCTTTGAGCGCACGCCGCCAAGTGGTGGCA
GATCGATGGTCACATCCAGGGCCTTGGTGAAACCGCCGGCGGGATCAGCT
AGGAGGCGCACCTTGCCCGCGGCTCCGTGCTCCTTGCCCCAGGCGGACAT
CACAAAGGGATCGTTGACCGAAACGCAGACAATCTCGTCCACGCCCTGCT
TGGACTTCAGCTCATCGGCGGAGCTCACATAGCCGGGCAAGTGGGTCTTT
GAGCAGCCTGGAGTGAAGGCGCCGGGAACGCCGAAGATGATCACCTTCTT
GCCATTGACGAGATCGCCGGTGTTGATTTTGTTGGCTGGCGAGTCCTCGA
ACAGATCCACCGATGGCAGGGAGTCTCCTACTTTCACCATAGCTGCACTG
GTTTTGGACAGGGATCGCAGTGAAATGATTTGTTGGGGCAGCGCGGAGTT
AACAACTCGGCCAAGAAATTTGCACGACAGCACACGCATGTCGACTGATA
ACT
BS06242.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7217-PA | 573 | CG7217-RA | 1..573 | 589..17 | 2865 | 100 | Minus |
CG7217-PB | 573 | CG7217-RB | 1..573 | 589..17 | 2865 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:51:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7215-RA | 1449 | CG7215-RA | 753..1326 | 589..16 | 2870 | 100 | Minus |
Prx5-RB | 733 | CG7217-RB | 37..610 | 589..16 | 2870 | 100 | Minus |
Prx5-RA | 1449 | CG7217-RA | 753..1326 | 589..16 | 2870 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:51:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18165565..18165897 | 16..348 | 1665 | 100 | Plus |
3R | 32079331 | 3R | 18166026..18166160 | 347..481 | 675 | 100 | Plus |
3R | 32079331 | 3R | 18166352..18166462 | 479..589 | 555 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:51:19 has no hits.
BS06242.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:59 Download gff for
BS06242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7217-PB | 1..573 | 17..589 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:59 Download gff for
BS06242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7217-PB | 1..573 | 17..589 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:29:14 Download gff for
BS06242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7215-RA | 746..1333 | 9..596 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:18:11 Download gff for
BS06242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx5-RA | 746..1333 | 9..596 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:18:11 Download gff for
BS06242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18165558..18165895 | 9..346 | 98 | <- | Plus |
3R | 18166026..18166160 | 347..481 | 100 | <- | Plus |
3R | 18166355..18166469 | 482..596 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:29:14 Download gff for
BS06242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13992077..13992191 | 482..596 | 97 | | Plus |
arm_3R | 13991280..13991617 | 9..346 | 98 | <- | Plus |
arm_3R | 13991748..13991882 | 347..481 | 100 | <- | Plus |
BS06242.complete Sequence
605 bp (605 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635411
> BS06242.complete
GAAGTTATCAGTCGACATGCGTGTGCTGTCGTGCAAATTTCTTGGCCGAG
TTGTTAACTCCGCGCTGCCCCAACAAATCATTTCACTGCGATCCCTGTCC
AAAACCAGTGCAGCTATGGTGAAAGTAGGAGACTCCCTGCCATCGGTGGA
TCTGTTCGAGGACTCGCCAGCCAACAAAATCAACACCGGCGATCTCGTCA
ATGGCAAGAAGGTGATCATCTTCGGCGTTCCCGGCGCCTTCACTCCAGGC
TGCTCAAAGACCCACTTGCCCGGCTATGTGAGCTCCGCCGATGAGCTGAA
GTCCAAGCAGGGCGTGGACGAGATTGTCTGCGTTTCGGTCAACGATCCCT
TTGTGATGTCCGCCTGGGGCAAGGAGCACGGAGCCGCGGGCAAGGTGCGC
CTCCTAGCTGATCCCGCCGGCGGTTTCACCAAGGCCCTGGATGTGACCAT
CGATCTGCCACCACTTGGCGGCGTGCGCTCAAAGCGCTACTCGCTGGTGG
TGGAGAACGGCAAGGTGACCGAGCTGAATGTCGAGCCCGATGGCACCGGA
CTCAGCTGCTCGCTGGCCAACAACATTGGCAAGAAGTAAAAGCTTTCTAG
ACCAT
BS06242.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prx5-RB | 573 | CG7217-PB | 1..573 | 17..589 | 2865 | 100 | Plus |
Prx5-RA | 573 | CG7217-PA | 1..573 | 17..589 | 2865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7215-RA | 1449 | CG7215-RA | 753..1326 | 17..590 | 2870 | 100 | Plus |
Prx5-RB | 733 | CG7217-RB | 37..610 | 17..590 | 2870 | 100 | Plus |
Prx5-RA | 1449 | CG7217-RA | 753..1326 | 17..590 | 2870 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 18165565..18165897 | 590..258 | 1665 | 100 | Minus |
3R | 32079331 | 3R | 18166026..18166160 | 259..125 | 675 | 100 | Minus |
3R | 32079331 | 3R | 18166352..18166462 | 127..17 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:26:40 has no hits.
BS06242.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:59 Download gff for
BS06242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7217-RB | 1..573 | 17..589 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:32 Download gff for
BS06242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7215-RA | 718..1305 | 10..597 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:55 Download gff for
BS06242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7215-RA | 753..1323 | 17..587 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:59 Download gff for
BS06242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7215-RA | 718..1305 | 10..597 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:28 Download gff for
BS06242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Prx5-RA | 753..1323 | 17..587 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:28 Download gff for
BS06242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 18165568..18165895 | 260..587 | 100 | <- | Minus |
3R | 18166026..18166160 | 125..259 | 100 | <- | Minus |
3R | 18166355..18166462 | 17..124 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:55 Download gff for
BS06242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 13991748..13991882 | 125..259 | 100 | <- | Minus |
arm_3R | 13992077..13992184 | 17..124 | 100 | | Minus |
arm_3R | 13991290..13991617 | 260..587 | 100 | <- | Minus |
BS06242.pep Sequence
Translation from 16 to 588
> BS06242.pep
MRVLSCKFLGRVVNSALPQQIISLRSLSKTSAAMVKVGDSLPSVDLFEDS
PANKINTGDLVNGKKVIIFGVPGAFTPGCSKTHLPGYVSSADELKSKQGV
DEIVCVSVNDPFVMSAWGKEHGAAGKVRLLADPAGGFTKALDVTIDLPPL
GGVRSKRYSLVVENGKVTELNVEPDGTGLSCSLANNIGKK*
BS06242.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Prx5-PB | 190 | CG7217-PB | 1..190 | 1..190 | 969 | 100 | Plus |
Prx5-PA | 190 | CG7217-PA | 1..190 | 1..190 | 969 | 100 | Plus |