Clone BS06242 Report

Search the DGRC for BS06242

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptPrx5-RA
Protein status:BS06242.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06242.5prime Sequence

603 bp (602 high quality bases) assembled on 2005-12-03

> BS06242.5prime
GAAGTTATCAGTCGACATGCGTGTGCTGTCGTGCAAATTTCTTGGCCGAG
TTGTTAACTCCGCGCTGCCCCAACAAATCATTTCACTGCGATCCCTGTCC
AAAACCAGTGCAGCTATGGTGAAAGTAGGAGACTCCCTGCCATCGGTGGA
TCTGTTCGAGGACTCGCCAGCCAACAAAATCAACACCGGCGATCTCGTCA
ATGGCAAGAAGGTGATCATCTTCGGCGTTCCCGGCGCCTTCACTCCAGGC
TGCTCAAAGACCCACTTGCCCGGCTATGTGAGCTCCGCCGATGAGCTGAA
GTCCAAGCAGGGCGTGGACGAGATTGTCTGCGTTTCGGTCAACGATCCCT
TTGTGATGTCCGCCTGGGGCAAGGAGCACGGAGCCGCGGGCAAGGTGCGC
CTCCTAGCTGATCCCGCCGGCGGTTTCACCAAGGCCCTGGATGTGACCAT
CGATCTGCCACCACTTGGCGGCGTGCGCTCAAAGCGCTACTCGCTGGTGG
TGGAGAACGGCAAGGTGACCGAGCTGAATGTCGAGCCCGATGGCACCGGA
CTCAGCTGCTCGCTGGCCAACAACATTGGCAAGAAGTAAAAGCTTTCTAG
ACC

BS06242.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7217-PA 573 CG7217-RA 1..573 17..589 2865 100 Plus
CG7217-PB 573 CG7217-RB 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:07:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG7215-RA 1449 CG7215-RA 753..1326 17..590 2870 100 Plus
Prx5-RB 733 CG7217-RB 37..610 17..590 2870 100 Plus
Prx5-RA 1449 CG7217-RA 753..1326 17..590 2870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:07:50
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18165565..18165897 590..258 1665 100 Minus
3R 32079331 3R 18166026..18166160 259..125 675 100 Minus
3R 32079331 3R 18166352..18166462 127..17 555 100 Minus
Blast to na_te.dros performed on 2015-02-12 13:07:53 has no hits.

BS06242.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:00 Download gff for BS06242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7217-PB 1..573 17..589 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:00 Download gff for BS06242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7217-PB 1..573 17..589 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:08:04 Download gff for BS06242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7215-RA 746..1333 10..597 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:33:35 Download gff for BS06242.5prime
Subject Subject Range Query Range Percent Splice Strand
Prx5-RA 746..1333 10..597 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:33:35 Download gff for BS06242.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 18165558..18165895 260..597 98 <- Minus
3R 18166026..18166160 125..259 100 <- Minus
3R 18166355..18166469 10..124 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:08:04 Download gff for BS06242.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13991280..13991617 260..597 98 <- Minus
arm_3R 13991748..13991882 125..259 100 <- Minus
arm_3R 13992077..13992191 10..124 97   Minus

BS06242.3prime Sequence

603 bp (602 high quality bases) assembled on 2005-12-03

> BS06242.3prime
ATGGTCTAGAAAGCTTTTACTTCTTGCCAATGTTGTTGGCCAGCGAGCAG
CTGAGTCCGGTGCCATCGGGCTCGACATTCAGCTCGGTCACCTTGCCGTT
CTCCACCACCAGCGAGTAGCGCTTTGAGCGCACGCCGCCAAGTGGTGGCA
GATCGATGGTCACATCCAGGGCCTTGGTGAAACCGCCGGCGGGATCAGCT
AGGAGGCGCACCTTGCCCGCGGCTCCGTGCTCCTTGCCCCAGGCGGACAT
CACAAAGGGATCGTTGACCGAAACGCAGACAATCTCGTCCACGCCCTGCT
TGGACTTCAGCTCATCGGCGGAGCTCACATAGCCGGGCAAGTGGGTCTTT
GAGCAGCCTGGAGTGAAGGCGCCGGGAACGCCGAAGATGATCACCTTCTT
GCCATTGACGAGATCGCCGGTGTTGATTTTGTTGGCTGGCGAGTCCTCGA
ACAGATCCACCGATGGCAGGGAGTCTCCTACTTTCACCATAGCTGCACTG
GTTTTGGACAGGGATCGCAGTGAAATGATTTGTTGGGGCAGCGCGGAGTT
AACAACTCGGCCAAGAAATTTGCACGACAGCACACGCATGTCGACTGATA
ACT

BS06242.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG7217-PA 573 CG7217-RA 1..573 589..17 2865 100 Minus
CG7217-PB 573 CG7217-RB 1..573 589..17 2865 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:51:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG7215-RA 1449 CG7215-RA 753..1326 589..16 2870 100 Minus
Prx5-RB 733 CG7217-RB 37..610 589..16 2870 100 Minus
Prx5-RA 1449 CG7217-RA 753..1326 589..16 2870 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:51:17
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18165565..18165897 16..348 1665 100 Plus
3R 32079331 3R 18166026..18166160 347..481 675 100 Plus
3R 32079331 3R 18166352..18166462 479..589 555 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:51:19 has no hits.

BS06242.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:34:59 Download gff for BS06242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7217-PB 1..573 17..589 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:11:59 Download gff for BS06242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7217-PB 1..573 17..589 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 15:29:14 Download gff for BS06242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7215-RA 746..1333 9..596 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:18:11 Download gff for BS06242.3prime
Subject Subject Range Query Range Percent Splice Strand
Prx5-RA 746..1333 9..596 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:18:11 Download gff for BS06242.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 18165558..18165895 9..346 98 <- Plus
3R 18166026..18166160 347..481 100 <- Plus
3R 18166355..18166469 482..596 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 15:29:14 Download gff for BS06242.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13992077..13992191 482..596 97   Plus
arm_3R 13991280..13991617 9..346 98 <- Plus
arm_3R 13991748..13991882 347..481 100 <- Plus

BS06242.complete Sequence

605 bp (605 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635411

> BS06242.complete
GAAGTTATCAGTCGACATGCGTGTGCTGTCGTGCAAATTTCTTGGCCGAG
TTGTTAACTCCGCGCTGCCCCAACAAATCATTTCACTGCGATCCCTGTCC
AAAACCAGTGCAGCTATGGTGAAAGTAGGAGACTCCCTGCCATCGGTGGA
TCTGTTCGAGGACTCGCCAGCCAACAAAATCAACACCGGCGATCTCGTCA
ATGGCAAGAAGGTGATCATCTTCGGCGTTCCCGGCGCCTTCACTCCAGGC
TGCTCAAAGACCCACTTGCCCGGCTATGTGAGCTCCGCCGATGAGCTGAA
GTCCAAGCAGGGCGTGGACGAGATTGTCTGCGTTTCGGTCAACGATCCCT
TTGTGATGTCCGCCTGGGGCAAGGAGCACGGAGCCGCGGGCAAGGTGCGC
CTCCTAGCTGATCCCGCCGGCGGTTTCACCAAGGCCCTGGATGTGACCAT
CGATCTGCCACCACTTGGCGGCGTGCGCTCAAAGCGCTACTCGCTGGTGG
TGGAGAACGGCAAGGTGACCGAGCTGAATGTCGAGCCCGATGGCACCGGA
CTCAGCTGCTCGCTGGCCAACAACATTGGCAAGAAGTAAAAGCTTTCTAG
ACCAT

BS06242.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:26:41
Subject Length Description Subject Range Query Range Score Percent Strand
Prx5-RB 573 CG7217-PB 1..573 17..589 2865 100 Plus
Prx5-RA 573 CG7217-PA 1..573 17..589 2865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:26:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG7215-RA 1449 CG7215-RA 753..1326 17..590 2870 100 Plus
Prx5-RB 733 CG7217-RB 37..610 17..590 2870 100 Plus
Prx5-RA 1449 CG7217-RA 753..1326 17..590 2870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:26:39
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 18165565..18165897 590..258 1665 100 Minus
3R 32079331 3R 18166026..18166160 259..125 675 100 Minus
3R 32079331 3R 18166352..18166462 127..17 555 100 Minus
Blast to na_te.dros performed on 2014-11-26 15:26:40 has no hits.

BS06242.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:59 Download gff for BS06242.complete
Subject Subject Range Query Range Percent Splice Strand
CG7217-RB 1..573 17..589 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:32 Download gff for BS06242.complete
Subject Subject Range Query Range Percent Splice Strand
CG7215-RA 718..1305 10..597 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 00:00:55 Download gff for BS06242.complete
Subject Subject Range Query Range Percent Splice Strand
CG7215-RA 753..1323 17..587 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:59 Download gff for BS06242.complete
Subject Subject Range Query Range Percent Splice Strand
CG7215-RA 718..1305 10..597 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:41:28 Download gff for BS06242.complete
Subject Subject Range Query Range Percent Splice Strand
Prx5-RA 753..1323 17..587 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:41:28 Download gff for BS06242.complete
Subject Subject Range Query Range Percent Splice Strand
3R 18165568..18165895 260..587 100 <- Minus
3R 18166026..18166160 125..259 100 <- Minus
3R 18166355..18166462 17..124 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 00:00:55 Download gff for BS06242.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 13991748..13991882 125..259 100 <- Minus
arm_3R 13992077..13992184 17..124 100   Minus
arm_3R 13991290..13991617 260..587 100 <- Minus

BS06242.pep Sequence

Translation from 16 to 588

> BS06242.pep
MRVLSCKFLGRVVNSALPQQIISLRSLSKTSAAMVKVGDSLPSVDLFEDS
PANKINTGDLVNGKKVIIFGVPGAFTPGCSKTHLPGYVSSADELKSKQGV
DEIVCVSVNDPFVMSAWGKEHGAAGKVRLLADPAGGFTKALDVTIDLPPL
GGVRSKRYSLVVENGKVTELNVEPDGTGLSCSLANNIGKK*

BS06242.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:52
Subject Length Description Subject Range Query Range Score Percent Strand
Prx5-PB 190 CG7217-PB 1..190 1..190 969 100 Plus
Prx5-PA 190 CG7217-PA 1..190 1..190 969 100 Plus