Clone BS06246 Report

Search the DGRC for BS06246

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG1307-RC
Protein status:BS06246.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06246.3prime Sequence

591 bp (590 high quality bases) assembled on 2005-12-03

> BS06246.3prime
ATGGTCTAGAAAGCTTTTACAGCAATTTCAGGTGGCCGGTAACCCGGTCG
ATGTCGGCGGCAGCCGCTGGACCCACGGCCAGCACAGTCTTGGAGTTGGC
CTCTATTTGTGTGCGACCGGCGTCGCGGATGAGACACGTGTTCAGTTGCT
GTCTCTCGGCCTCCTTCTTGATGGCCATCAGCTCCGCCTCGCTCTCCACG
CGAACGGCTATCTTGGCGCAACCGCAGTTCTCCCACGACCGCAGTAGTCG
AGGCGTCCTGACCACCGCCCGCTGGTAAGCACCCACCGCTCCGTGGCCAC
ACTGGGCGGCAATTTTGCCCTTGCCCATCTTGAGATCGTTGCGCACCACC
AGGACCATCTTAAAGTTGTCGTTCAAGCCTCCATAGCCCTTATCCGAAAC
TGAAGCCTCGGAACCGCTAGACACCGAAGATTCCTGCGAGAACGGGGTCG
CCGCTCCCTCGGTGACGGAGTCCTTGGCATCGCCTCGCTTCAGGGCGTAT
CGGTAGCCCACGAAAAAGGACAGCATCACAGCCAGCCCATTGATGATCTG
CGTCGGATCCAGCAACTTGTCGCCCATGTCGACTGATAACT

BS06246.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1307-PB 561 CG1307-RB 1..561 577..17 2805 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:39:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG1307-RE 1159 CG1307-RE 107..667 577..17 2805 100 Minus
CG1307-RD 970 CG1307-RD 178..738 577..17 2805 100 Minus
CG1307-RC 899 CG1307-RC 107..667 577..17 2805 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6656522..6656895 17..390 1870 100 Plus
3R 32079331 3R 6657147..6657336 388..577 950 100 Plus
Blast to na_te.dros performed on 2015-02-11 10:39:46 has no hits.

BS06246.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:05 Download gff for BS06246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1307-PB 1..561 17..577 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:07 Download gff for BS06246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1307-PB 1..561 17..577 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:33 Download gff for BS06246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1307-RC 101..667 17..584 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:12 Download gff for BS06246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1307-RC 101..667 17..584 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:12 Download gff for BS06246.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 6656517..6656893 14..388 98 <- Plus
3R 6657148..6657342 389..584 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:33 Download gff for BS06246.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2482239..2482615 14..388 98 <- Plus
arm_3R 2482870..2483064 389..584 97   Plus

BS06246.5prime Sequence

591 bp (590 high quality bases) assembled on 2005-12-03

> BS06246.5prime
GAAGTTATCAGTCGACATGGGCGACAAGTTGCTGGATCCGACGCAGATCA
TCAATGGGCTGGCTGTGATGCTGTCCTTTTTCGTGGGCTACCGATACGCC
CTGAAGCGAGGCGATGCCAAGGACTCCGTCACCGAGGGAGCGGCGACCCC
GTTCTCGCAGGAATCTTCGGTGTCTAGCGGTTCCGAGGCTTCAGTTTCGG
ATAAGGGCTATGGAGGCTTGAACGACAACTTTAAGATGGTCCTGGTGGTG
CGCAACGATCTCAAGATGGGCAAGGGCAAAATTGCCGCCCAGTGTGGCCA
CGGAGCGGTGGGTGCTTACCAGCGGGCGGTGGTCAGGACGCCTCGACTAC
TGCGGTCGTGGGAGAACTGCGGTTGCGCCAAGATAGCCGTTCGCGTGGAG
AGCGAGGCGGAGCTGATGGCCATCAAGAAGGAGGCCGAGAGACAGCAACT
GAACACGTGTCTCATCCGCGACGCCGGTCGCACACAAATAGAGGCCAACT
CCAAGACTGTGCTGGCCGTGGGTCCAGCGGCTGCCGCCGACATCGACCGG
GTTACCGGCCACCTGAAATTGCTGTAAAAGCTTTCTAGACC

BS06246.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG1307-PB 561 CG1307-RB 1..561 17..577 2805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:41:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG1307-RE 1159 CG1307-RE 107..667 17..577 2805 100 Plus
CG1307-RD 970 CG1307-RD 178..738 17..577 2805 100 Plus
CG1307-RC 899 CG1307-RC 107..667 17..577 2805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:41:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6656522..6656895 577..204 1870 100 Minus
3R 32079331 3R 6657147..6657336 206..17 950 100 Minus
Blast to na_te.dros performed on 2015-02-11 10:41:16 has no hits.

BS06246.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:07 Download gff for BS06246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1307-PB 1..561 17..577 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:09 Download gff for BS06246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1307-PB 1..561 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:24:38 Download gff for BS06246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1307-RC 101..667 10..577 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:40 Download gff for BS06246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1307-RC 101..667 10..577 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:40 Download gff for BS06246.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 6656517..6656893 206..580 98 <- Minus
3R 6657148..6657342 10..205 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:24:38 Download gff for BS06246.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2482239..2482615 206..580 98 <- Minus
arm_3R 2482870..2483064 10..205 97   Minus

BS06246.complete Sequence

593 bp (593 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635412

> BS06246.complete
GAAGTTATCAGTCGACATGGGCGACAAGTTGCTGGATCCGACGCAGATCA
TCAATGGGCTGGCTGTGATGCTGTCCTTTTTCGTGGGCTACCGATACGCC
CTGAAGCGAGGCGATGCCAAGGACTCCGTCACCGAGGGAGCGGCGACCCC
GTTCTCGCAGGAATCTTCGGTGTCTAGCGGTTCCGAGGCTTCAGTTTCGG
ATAAGGGCTATGGAGGCTTGAACGACAACTTTAAGATGGTCCTGGTGGTG
CGCAACGATCTCAAGATGGGCAAGGGCAAAATTGCCGCCCAGTGTGGCCA
CGGAGCGGTGGGTGCTTACCAGCGGGCGGTGGTCAGGACGCCTCGACTAC
TGCGGTCGTGGGAGAACTGCGGTTGCGCCAAGATAGCCGTTCGCGTGGAG
AGCGAGGCGGAGCTGATGGCCATCAAGAAGGAGGCCGAGAGACAGCAACT
GAACACGTGTCTCATCCGCGACGCCGGTCGCACACAAATAGAGGCCAACT
CCAAGACTGTGCTGGCCGTGGGTCCAGCGGCTGCCGCCGACATCGACCGG
GTTACCGGCCACCTGAAATTGCTGTAAAAGCTTTCTAGACCAT

BS06246.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1307-RE 561 CG1307-PE 1..561 17..577 2805 100 Plus
CG1307-RD 561 CG1307-PD 1..561 17..577 2805 100 Plus
CG1307-RC 561 CG1307-PC 1..561 17..577 2805 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG1307-RE 1159 CG1307-RE 107..667 17..577 2805 100 Plus
CG1307-RD 970 CG1307-RD 178..738 17..577 2805 100 Plus
CG1307-RC 899 CG1307-RC 107..667 17..577 2805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:35:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 6656522..6656895 577..204 1870 100 Minus
3R 32079331 3R 6657147..6657336 206..17 950 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:35:02 has no hits.

BS06246.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:00 Download gff for BS06246.complete
Subject Subject Range Query Range Percent Splice Strand
CG1307-RB 1..561 17..577 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:34 Download gff for BS06246.complete
Subject Subject Range Query Range Percent Splice Strand
CG1307-RB 172..738 10..577 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:10 Download gff for BS06246.complete
Subject Subject Range Query Range Percent Splice Strand
CG1307-RC 107..665 17..575 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:01 Download gff for BS06246.complete
Subject Subject Range Query Range Percent Splice Strand
CG1307-RB 172..738 10..577 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:52 Download gff for BS06246.complete
Subject Subject Range Query Range Percent Splice Strand
CG1307-RC 107..665 17..575 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:52 Download gff for BS06246.complete
Subject Subject Range Query Range Percent Splice Strand
3R 6656524..6656893 206..575 100 <- Minus
3R 6657148..6657336 17..205 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:10 Download gff for BS06246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 2482246..2482615 206..575 100 <- Minus
arm_3R 2482870..2483058 17..205 100   Minus

BS06246.pep Sequence

Translation from 16 to 576

> BS06246.pep
MGDKLLDPTQIINGLAVMLSFFVGYRYALKRGDAKDSVTEGAATPFSQES
SVSSGSEASVSDKGYGGLNDNFKMVLVVRNDLKMGKGKIAAQCGHGAVGA
YQRAVVRTPRLLRSWENCGCAKIAVRVESEAELMAIKKEAERQQLNTCLI
RDAGRTQIEANSKTVLAVGPAAAADIDRVTGHLKLL*

BS06246.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG1307-PE 186 CG1307-PE 1..186 1..186 936 100 Plus
CG1307-PD 186 CG1307-PD 1..186 1..186 936 100 Plus
CG1307-PC 186 CG1307-PC 1..186 1..186 936 100 Plus
CG17327-PC 139 CG17327-PC 23..139 73..186 269 47 Plus
CG17327-PA 139 CG17327-PA 23..139 73..186 269 47 Plus