Clone Sequence Records
BS06246.3prime Sequence
591 bp (590 high quality bases) assembled on 2005-12-03
> BS06246.3prime
ATGGTCTAGAAAGCTTTTACAGCAATTTCAGGTGGCCGGTAACCCGGTCG
ATGTCGGCGGCAGCCGCTGGACCCACGGCCAGCACAGTCTTGGAGTTGGC
CTCTATTTGTGTGCGACCGGCGTCGCGGATGAGACACGTGTTCAGTTGCT
GTCTCTCGGCCTCCTTCTTGATGGCCATCAGCTCCGCCTCGCTCTCCACG
CGAACGGCTATCTTGGCGCAACCGCAGTTCTCCCACGACCGCAGTAGTCG
AGGCGTCCTGACCACCGCCCGCTGGTAAGCACCCACCGCTCCGTGGCCAC
ACTGGGCGGCAATTTTGCCCTTGCCCATCTTGAGATCGTTGCGCACCACC
AGGACCATCTTAAAGTTGTCGTTCAAGCCTCCATAGCCCTTATCCGAAAC
TGAAGCCTCGGAACCGCTAGACACCGAAGATTCCTGCGAGAACGGGGTCG
CCGCTCCCTCGGTGACGGAGTCCTTGGCATCGCCTCGCTTCAGGGCGTAT
CGGTAGCCCACGAAAAAGGACAGCATCACAGCCAGCCCATTGATGATCTG
CGTCGGATCCAGCAACTTGTCGCCCATGTCGACTGATAACT
BS06246.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1307-PB | 561 | CG1307-RB | 1..561 | 577..17 | 2805 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:39:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1307-RE | 1159 | CG1307-RE | 107..667 | 577..17 | 2805 | 100 | Minus |
CG1307-RD | 970 | CG1307-RD | 178..738 | 577..17 | 2805 | 100 | Minus |
CG1307-RC | 899 | CG1307-RC | 107..667 | 577..17 | 2805 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:39:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6656522..6656895 | 17..390 | 1870 | 100 | Plus |
3R | 32079331 | 3R | 6657147..6657336 | 388..577 | 950 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 10:39:46 has no hits.
BS06246.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:05 Download gff for
BS06246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1307-PB | 1..561 | 17..577 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:07 Download gff for
BS06246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1307-PB | 1..561 | 17..577 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 08:08:33 Download gff for
BS06246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1307-RC | 101..667 | 17..584 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:22:12 Download gff for
BS06246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1307-RC | 101..667 | 17..584 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:22:12 Download gff for
BS06246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6656517..6656893 | 14..388 | 98 | <- | Plus |
3R | 6657148..6657342 | 389..584 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 08:08:33 Download gff for
BS06246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2482239..2482615 | 14..388 | 98 | <- | Plus |
arm_3R | 2482870..2483064 | 389..584 | 97 | | Plus |
BS06246.5prime Sequence
591 bp (590 high quality bases) assembled on 2005-12-03
> BS06246.5prime
GAAGTTATCAGTCGACATGGGCGACAAGTTGCTGGATCCGACGCAGATCA
TCAATGGGCTGGCTGTGATGCTGTCCTTTTTCGTGGGCTACCGATACGCC
CTGAAGCGAGGCGATGCCAAGGACTCCGTCACCGAGGGAGCGGCGACCCC
GTTCTCGCAGGAATCTTCGGTGTCTAGCGGTTCCGAGGCTTCAGTTTCGG
ATAAGGGCTATGGAGGCTTGAACGACAACTTTAAGATGGTCCTGGTGGTG
CGCAACGATCTCAAGATGGGCAAGGGCAAAATTGCCGCCCAGTGTGGCCA
CGGAGCGGTGGGTGCTTACCAGCGGGCGGTGGTCAGGACGCCTCGACTAC
TGCGGTCGTGGGAGAACTGCGGTTGCGCCAAGATAGCCGTTCGCGTGGAG
AGCGAGGCGGAGCTGATGGCCATCAAGAAGGAGGCCGAGAGACAGCAACT
GAACACGTGTCTCATCCGCGACGCCGGTCGCACACAAATAGAGGCCAACT
CCAAGACTGTGCTGGCCGTGGGTCCAGCGGCTGCCGCCGACATCGACCGG
GTTACCGGCCACCTGAAATTGCTGTAAAAGCTTTCTAGACC
BS06246.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1307-PB | 561 | CG1307-RB | 1..561 | 17..577 | 2805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 10:41:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1307-RE | 1159 | CG1307-RE | 107..667 | 17..577 | 2805 | 100 | Plus |
CG1307-RD | 970 | CG1307-RD | 178..738 | 17..577 | 2805 | 100 | Plus |
CG1307-RC | 899 | CG1307-RC | 107..667 | 17..577 | 2805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 10:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6656522..6656895 | 577..204 | 1870 | 100 | Minus |
3R | 32079331 | 3R | 6657147..6657336 | 206..17 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 10:41:16 has no hits.
BS06246.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:07 Download gff for
BS06246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1307-PB | 1..561 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:09 Download gff for
BS06246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1307-PB | 1..561 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-24 15:24:38 Download gff for
BS06246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1307-RC | 101..667 | 10..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 12:28:40 Download gff for
BS06246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1307-RC | 101..667 | 10..577 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 12:28:40 Download gff for
BS06246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6656517..6656893 | 206..580 | 98 | <- | Minus |
3R | 6657148..6657342 | 10..205 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-24 15:24:38 Download gff for
BS06246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2482239..2482615 | 206..580 | 98 | <- | Minus |
arm_3R | 2482870..2483064 | 10..205 | 97 | | Minus |
BS06246.complete Sequence
593 bp (593 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635412
> BS06246.complete
GAAGTTATCAGTCGACATGGGCGACAAGTTGCTGGATCCGACGCAGATCA
TCAATGGGCTGGCTGTGATGCTGTCCTTTTTCGTGGGCTACCGATACGCC
CTGAAGCGAGGCGATGCCAAGGACTCCGTCACCGAGGGAGCGGCGACCCC
GTTCTCGCAGGAATCTTCGGTGTCTAGCGGTTCCGAGGCTTCAGTTTCGG
ATAAGGGCTATGGAGGCTTGAACGACAACTTTAAGATGGTCCTGGTGGTG
CGCAACGATCTCAAGATGGGCAAGGGCAAAATTGCCGCCCAGTGTGGCCA
CGGAGCGGTGGGTGCTTACCAGCGGGCGGTGGTCAGGACGCCTCGACTAC
TGCGGTCGTGGGAGAACTGCGGTTGCGCCAAGATAGCCGTTCGCGTGGAG
AGCGAGGCGGAGCTGATGGCCATCAAGAAGGAGGCCGAGAGACAGCAACT
GAACACGTGTCTCATCCGCGACGCCGGTCGCACACAAATAGAGGCCAACT
CCAAGACTGTGCTGGCCGTGGGTCCAGCGGCTGCCGCCGACATCGACCGG
GTTACCGGCCACCTGAAATTGCTGTAAAAGCTTTCTAGACCAT
BS06246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:35:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1307-RE | 561 | CG1307-PE | 1..561 | 17..577 | 2805 | 100 | Plus |
CG1307-RD | 561 | CG1307-PD | 1..561 | 17..577 | 2805 | 100 | Plus |
CG1307-RC | 561 | CG1307-PC | 1..561 | 17..577 | 2805 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:35:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1307-RE | 1159 | CG1307-RE | 107..667 | 17..577 | 2805 | 100 | Plus |
CG1307-RD | 970 | CG1307-RD | 178..738 | 17..577 | 2805 | 100 | Plus |
CG1307-RC | 899 | CG1307-RC | 107..667 | 17..577 | 2805 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:35:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 6656522..6656895 | 577..204 | 1870 | 100 | Minus |
3R | 32079331 | 3R | 6657147..6657336 | 206..17 | 950 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:35:02 has no hits.
BS06246.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:00 Download gff for
BS06246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1307-RB | 1..561 | 17..577 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:34 Download gff for
BS06246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1307-RB | 172..738 | 10..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:10 Download gff for
BS06246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1307-RC | 107..665 | 17..575 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:01 Download gff for
BS06246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1307-RB | 172..738 | 10..577 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:52 Download gff for
BS06246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1307-RC | 107..665 | 17..575 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:52 Download gff for
BS06246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 6656524..6656893 | 206..575 | 100 | <- | Minus |
3R | 6657148..6657336 | 17..205 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:10 Download gff for
BS06246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 2482246..2482615 | 206..575 | 100 | <- | Minus |
arm_3R | 2482870..2483058 | 17..205 | 100 | | Minus |
BS06246.pep Sequence
Translation from 16 to 576
> BS06246.pep
MGDKLLDPTQIINGLAVMLSFFVGYRYALKRGDAKDSVTEGAATPFSQES
SVSSGSEASVSDKGYGGLNDNFKMVLVVRNDLKMGKGKIAAQCGHGAVGA
YQRAVVRTPRLLRSWENCGCAKIAVRVESEAELMAIKKEAERQQLNTCLI
RDAGRTQIEANSKTVLAVGPAAAADIDRVTGHLKLL*
BS06246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1307-PE | 186 | CG1307-PE | 1..186 | 1..186 | 936 | 100 | Plus |
CG1307-PD | 186 | CG1307-PD | 1..186 | 1..186 | 936 | 100 | Plus |
CG1307-PC | 186 | CG1307-PC | 1..186 | 1..186 | 936 | 100 | Plus |
CG17327-PC | 139 | CG17327-PC | 23..139 | 73..186 | 269 | 47 | Plus |
CG17327-PA | 139 | CG17327-PA | 23..139 | 73..186 | 269 | 47 | Plus |