Clone Sequence Records
BS06247.3prime Sequence
921 bp (857 high quality bases) assembled on 2005-12-03
> BS06247.3prime
ATGGTCTAGAAAGCTTTTAGTTGGTCACATAGATTTCGAACTCCTTGTAG
GCCAGCTCCTCGCCGCCGTACGGAATGTAGCAGCATCCGTGGGAGGGCTG
CACCTTGCCCACAGTGATAGTTCCGTCGTGGGTGGCACGGCCGATGAACA
GTGGTTCGCCCTCGGCGGTCTCTCCGGCAGGCAGGGCGTTGGGCGGGATG
TTTCCGGCATCCACGGGCAACCACTGGCCGCCGCCGGCGCACAGCACCTC
GTATTCGGCGTGGCCGTGCTCACCACCTCCCCAGGCTACGTAGGTCACTC
CGTGGGAGGGATGCAGCTTGCCGGGAATGAGGTCGCCCTCATGGCGGGCA
CGGGCGATGTACAGCTGCTCGCTGCTGTCGAATCCTCCCTCGAGGGCGTT
GGGTGGCACCTCACCGTTGGCGGCGGGCACCCAGCATCCTGGTCCGCTTC
CTGTGGGCGCGGCGAAGCCCATGACGGGAGCCGATGGAGCGGGCTCATCA
ATCAGCCAGGTGCCGCTGGCACCCCATCCCGTGCAGATGCCGACGAAGTT
GACCGGGAACAGGCTACCAGCATCGTAGGAAAGGAAGGCGGCGGCGTCTC
CTTCGCGGCCAACGGTGATGACATTGTCGTACCAGCGCACCCAGAAGCCA
CGGAACTCTCCGGCATCTAGGATGCCCGGAGTGGGCACCTCAGCGACTTC
GGGCTTCTGGCGGTCCTTGCGGATCACCGACTTGGTGTTCTCCCATCCTC
CCAGAAAGATCTCGAAAATGGGACCGTTCTCCTCGGGCGCGGGTGTGAGT
GCCAAATGAGCATCCTTGGGGGAACGCACCTTGAAGGTAAAAACTCCACC
GCTGGCGGGGAAGAATTGGTACTCCCACTTATCGGGGGTGTTGACTTCAA
TTGGCATGTCGACTGATAACT
BS06247.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10527-PA | 891 | CG10527-RA | 1..891 | 907..17 | 4405 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:22:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10527-RA | 1160 | CG10527-RA | 55..946 | 908..17 | 4430 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:22:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21070582..21071061 | 17..496 | 2400 | 100 | Plus |
| 2R | 25286936 | 2R | 21071402..21071804 | 496..898 | 2000 | 99.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:22:13 has no hits.
BS06247.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:08 Download gff for
BS06247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10527-PA | 1..891 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:10 Download gff for
BS06247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10527-PA | 1..891 | 17..907 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 04:00:06 Download gff for
BS06247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10527-RA | 48..948 | 13..915 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:57:57 Download gff for
BS06247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10527-RA | 48..948 | 13..915 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 20:57:57 Download gff for
BS06247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21070580..21071060 | 13..495 | 99 | <- | Plus |
| 2R | 21071402..21071808 | 496..906 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 04:00:06 Download gff for
BS06247.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16958085..16958565 | 13..495 | 99 | <- | Plus |
| arm_2R | 16958907..16959313 | 496..906 | 98 | | Plus |
BS06247.5prime Sequence
921 bp (795 high quality bases) assembled on 2005-12-03
> BS06247.5prime
GAAGTTATCAGTCGACATGCCAATCGAAGTCAACACCCCCGATAAGTTGG
AGTACCAATTCTTCCCCGCCAGCGGTGGAGTTTTTACCTTCAAGGTGCGT
TCCCCCAAGGATGCTCATTTGGCACTCACACCCGCGCCCGAGGAGAACGG
TCCCATTTTCGAGATCTTTCTGGGAGGATGGGAGAACACCAAGTCGGTGA
TCCGCAAGGACCGCCAGAAGCCCGAAGTCGCTGAGGTGCCCACTCCGGGC
ATCCTAGATGCCGGAGAGTTCCGTGGCTTCTGGGTGCGCTGGTACGACAA
TGTCATCACCGTTGGCCGCGAAGGAGACGCCGCCGCCTTCCTTTCCTACG
ATGCTGGTAGCCTGTTCCCGGTCAACTTCGTCGGCATCTGCACGGGATGG
GGTGCCAGCGGCACCTGGCTGATTGATGAGCCCGCTCCATCGGCTCCCGT
CATGGGCTTCGCCGCGCCCACAGGAAGCGGACCAGGATGCTGGGTGCCCG
CCGCCAACGGTGAGGTGCCACCCAACGCCCTCGAGGGAGGATTCGACAGC
AGCGAGCAGCTGTACATCGCCCGTGCCCGCCATGAGGGCGACCTCATTCC
CGGCAAGCTGCATCCCTCCCACGGAGTGACCTACGTAGCCTGGGGAGGTG
GTGAGCACGGCCACGCCGAATACGAGGTGCTGTGCGCCGGCGGCGGCCAG
TGGTTGCCCGTGGATGCCGGAAACATCCCGCCCAACGCCCTGCCTGCCGG
AGAGACCGCCGAGGGCGAACCACTGTTCATCGGCCGTGCCACCCACGACG
GAACTATCACTGTGGGCAAGGTGCAGCCCTCCCACGGATGCTGCTACATT
CCGTACGGCGGCGAGGAGCTGGGCTACAAGGAGTTCGAAATCTATGTGAC
CAACTAAAAGCTTTTCTAAAC
BS06247.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10527-PA | 891 | CG10527-RA | 1..891 | 17..907 | 4430 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 14:46:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10527-RA | 1160 | CG10527-RA | 55..946 | 16..907 | 4445 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 14:46:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21070582..21071061 | 907..428 | 2385 | 99.8 | Minus |
| 2R | 25286936 | 2R | 21071402..21071804 | 428..26 | 2015 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 14:46:53 has no hits.
BS06247.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:09 Download gff for
BS06247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10527-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:11 Download gff for
BS06247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10527-PA | 1..891 | 17..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 08:48:27 Download gff for
BS06247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10527-RA | 48..948 | 9..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:07:13 Download gff for
BS06247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10527-RA | 48..948 | 9..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:07:13 Download gff for
BS06247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21070580..21071060 | 429..911 | 99 | <- | Minus |
| 2R | 21071402..21071808 | 18..428 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 08:48:27 Download gff for
BS06247.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16958085..16958565 | 429..911 | 99 | <- | Minus |
| arm_2R | 16958907..16959313 | 18..428 | 99 | | Minus |
BS06247.complete Sequence
923 bp (923 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635413
> BS06247.complete
GAAGTTATCAGTCGACATGCCAATCGAAGTCAACACCCCCGATAAGTTGG
AGTACCAATTCTTCCCCGCCAGCGGTGGAGTTTTTACCTTCAAGGTGCGT
TCCCCCAAGGATGCTCATTTGGCACTCACACCCGCGCCCGAGGAGAACGG
TCCCATTTTCGAGATCTTTCTGGGAGGATGGGAGAACACCAAGTCGGTGA
TCCGCAAGGACCGCCAGAAGCCCGAAGTCGCTGAGGTGCCCACTCCGGGC
ATCCTAGATGCCGGAGAGTTCCGTGGCTTCTGGGTGCGCTGGTACGACAA
TGTCATCACCGTTGGCCGCGAAGGAGACGCCGCCGCCTTCCTTTCCTACG
ATGCTGGTAGCCTGTTCCCGGTCAACTTCGTCGGCATCTGCACGGGATGG
GGTGCCAGCGGCACCTGGCTGATTGATGAGCCCGCTCCATCGGCTCCCGT
CATGGGCTTCGCCGCGCCCACAGGAAGCGGACCAGGATGCTGGGTGCCCG
CCGCCAACGGTGAGGTGCCACCCAACGCCCTCGAGGGAGGATTCGACAGC
AGCGAGCAGCTGTACATCGCCCGTGCCCGCCATGAGGGCGACCTCATTCC
CGGCAAGCTGCATCCCTCCCACGGAGTGACCTACGTAGCCTGGGGAGGTG
GTGAGCACGGCCACGCCGAATACGAGGTGCTGTGCGCCGGCGGCGGCCAG
TGGTTGCCCGTGGATGCCGGAAACATCCCGCCCAACGCCCTGCCTGCCGG
AGAGACCGCCGAGGGCGAACCACTGTTCATCGGCCGTGCCACCCACGACG
GAACTATCACTGTGGGCAAGGTGCAGCCCTCCCACGGATGCTGCTACATT
CCGTACGGCGGCGAGGAGCTGGCCTACAAGGAGTTCGAAATCTATGTGAC
CAACTAAAAGCTTTCTAGACCAT
BS06247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:08:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10527-RA | 891 | CG10527-PA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:08:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10527-RA | 1160 | CG10527-RA | 55..946 | 16..907 | 4460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:08:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21070582..21071061 | 907..428 | 2400 | 100 | Minus |
| 2R | 25286936 | 2R | 21071402..21071804 | 428..26 | 2015 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:08:23 has no hits.
BS06247.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:02 Download gff for
BS06247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10527-RA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:35 Download gff for
BS06247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10527-RA | 44..944 | 9..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:07:11 Download gff for
BS06247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10527-RA | 56..944 | 17..905 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:02 Download gff for
BS06247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10527-RA | 44..944 | 9..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:15:39 Download gff for
BS06247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10527-RA | 56..944 | 17..905 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:15:39 Download gff for
BS06247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21070584..21071060 | 429..905 | 100 | <- | Minus |
| 2R | 21071402..21071808 | 18..428 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:07:11 Download gff for
BS06247.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16958089..16958565 | 429..905 | 100 | <- | Minus |
| arm_2R | 16958907..16959313 | 18..428 | 99 | | Minus |
BS06247.pep Sequence
Translation from 16 to 906
> BS06247.pep
MPIEVNTPDKLEYQFFPASGGVFTFKVRSPKDAHLALTPAPEENGPIFEI
FLGGWENTKSVIRKDRQKPEVAEVPTPGILDAGEFRGFWVRWYDNVITVG
REGDAAAFLSYDAGSLFPVNFVGICTGWGASGTWLIDEPAPSAPVMGFAA
PTGSGPGCWVPAANGEVPPNALEGGFDSSEQLYIARARHEGDLIPGKLHP
SHGVTYVAWGGGEHGHAEYEVLCAGGGQWLPVDAGNIPPNALPAGETAEG
EPLFIGRATHDGTITVGKVQPSHGCCYIPYGGEELAYKEFEIYVTN*
BS06247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10527-PA | 296 | CG10527-PA | 1..296 | 1..296 | 1632 | 100 | Plus |
| CG44250-PC | 297 | CG44250-PC | 1..153 | 146..294 | 362 | 45.1 | Plus |
| CG44250-PB | 286 | CG44250-PB | 14..142 | 167..294 | 360 | 48.8 | Plus |
| CG13321-PB | 286 | CG13321-PB | 145..284 | 156..294 | 340 | 44.3 | Plus |
| CG13321-PA | 286 | CG13321-PA | 145..284 | 156..294 | 340 | 44.3 | Plus |
| CG13321-PB | 286 | CG13321-PB | 13..143 | 165..294 | 324 | 42.7 | Plus |
| CG13321-PB | 286 | CG13321-PB | 78..211 | 159..292 | 292 | 39.3 | Plus |
| CG44250-PC | 297 | CG44250-PC | 160..293 | 159..292 | 283 | 42.2 | Plus |
| CG44250-PB | 286 | CG44250-PB | 149..282 | 159..292 | 283 | 42.2 | Plus |
| CG44250-PB | 286 | CG44250-PB | 77..212 | 159..292 | 276 | 40.4 | Plus |
