Clone BS06248 Report

Search the DGRC for BS06248

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG10916-RA
Protein status:BS06248.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06248.3prime Sequence

822 bp (761 high quality bases) assembled on 2005-12-03

> BS06248.3prime
ATGGTCTAGAAAGCTTTCATCGATCTGCCTGGTCACGTGGGGTGACCACC
AGGACTTCGTAGGTGTTTACGCTCACCTCTTGACCATGATGCGGGATGTA
CATGACCTTGTGGGAAGGATGCACCTTGCCCAGACGCAGGATACCCTGGT
AAAGACCACGACCCGTGTAGGTGACCTCACCCAGCTCGGAGTAGCCCGTG
TTCAGAGCATCCCGCGGATATGTTCCATGCTGTCCGGGCACCCACTTGTA
GTCACAGTCGTTGAGCACCAGGATCTCGACATCATCGGTCAGAGTTCGGG
CGCTACAGCTGTGCGAACCGAAGGCAGCCTTCTTTTCCGGTACATAAGGA
GCAGGCAGGAGATCGTCGTGGTAATATCCTCTGGCCACATACGTGGGCAG
TCCGTCTTCGTTGGTGCCACACTGCACAGCTCCCTCGGGCGGCAGGTGGG
CATCCGGTAAGCTGTCTCTGTCCAGATCAATGGGCACCCAATCCATGGCC
ACCTTGGGCAATTCGGTGTCATCGAACTCCGGGGCCTCGGCGAAGTTTAG
GTACAATCGGTGCACGCGTCGTCGGTCGCATGGGTCTCTGCATTGGGGGC
AGGTCCTGGACCTATTCAGCCATCGGGTGAGGCAGTCCTTGTGGAATACA
TGACCGCACCGTGAAGTTGAGAAAATTATGTCGTTGGCCCGGAAAAACTC
GTTGCAAATTGCACATAAAATGTTCAGTGAAGGTGATGAGTCATTTGTGG
GTGCAGTTTCTGCGATTTTTCCGCCGTTACCTTCCATTTCACTACTATTA
CTCTCCATGTCGACTGATAACT

BS06248.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG10916-PA 792 CG10916-RA 1..792 808..17 3960 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:34:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG10916-RB 2057 CG10916-RB 142..933 808..17 3960 100 Minus
CG10916-RA 1015 CG10916-RA 142..933 808..17 3960 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:34:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18173810..18174601 808..17 3960 100 Minus
2R 25286936 2R 18173275..18173352 477..400 300 92.3 Minus
2R 25286936 2R 18173353..18173448 142..47 285 86.5 Minus
Blast to na_te.dros performed on 2015-02-09 01:34:28 has no hits.

BS06248.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:10 Download gff for BS06248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10916-PA 1..792 17..808 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:13 Download gff for BS06248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10916-PA 1..792 17..808 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:55:45 Download gff for BS06248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10916-RA 136..940 8..814 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:09:33 Download gff for BS06248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10916-RA 136..940 8..814 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:09:33 Download gff for BS06248.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18173804..18174608 8..814 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:55:45 Download gff for BS06248.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14061309..14062113 8..814 99   Minus

BS06248.5prime Sequence

821 bp (768 high quality bases) assembled on 2005-12-03

> BS06248.5prime
GAAGTTATCAGTCGACATGGAGAGTAATAGTAGTGAAATGGAAGGTAACG
GCGGAAAAATCGCAGAAACTGCACCCACAAATGACTCATCACCTTCACTG
AACATTTTATGTGCAATTTGCAACGAGTTTTTCCGGGCCAACGACATAAT
TTTCTCAACTTCACGGTGCGGTCATGTATTCCACAAGGACTGCCTCACCC
GATGGCTGAATAGGTCCAGGACCTGCCCCCAATGCAGAGACCCATGCGAC
CGACGACGCGTGCACCGATTGTACCTAAACTTCGCCGAGGCCCCGGAGTT
CGATGACACCGAATTGCCCAAGGTGGCCATGGATTGGGTGCCCATTGATC
TGGACAGAGACAGCTTACCGGATGCCCACCTGCCGCCCGAGGGAGCTGTG
CAGTGTGGCACCAACGAAGACGGACTGCCCACGTATGTGGCCAGAGGATA
TTACCACGACGATCTCCTGCCTGCTCCTTATGTACCGGAAAAGAAGGCTG
CCTTCGGTTCGCACAGCTGTAGCGCCCGAACTCTGACCGATGATGTCGAG
ATCCTGGTGCTCAACGACTGTGACTACAAGTGGGTGCCCGGACAGCATGG
AACATATCCGCGGGATGCTCTGAACACGGGCTACTCCGAGCTGGGTGAGG
TCACCTACACGGGTCGTGGTCTTTACCAGGGTATCCTGCGTCTGGGCAAG
GTGCATCCTTCCCACAAGGTCATGTACATCCCGCATCATGGTCAAGAGGT
GAGCGTAAACACCTACGAAGTCCTGGTGGTCACCCACGTGACCAGGCAGA
TCGATGAAAGCTTTCTAGACC

BS06248.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10916-PA 792 CG10916-RA 1..769 17..785 3845 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:56:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG10916-RB 2057 CG10916-RB 142..933 17..807 3935 99.9 Plus
CG10916-RA 1015 CG10916-RA 142..933 17..807 3935 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:12
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18173810..18174601 17..807 3910 99.9 Plus
2R 25286936 2R 18173275..18173352 348..425 300 92.3 Plus
2R 25286936 2R 18173353..18173448 683..778 285 86.5 Plus
Blast to na_te.dros performed on 2015-02-12 19:56:16 has no hits.

BS06248.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:11 Download gff for BS06248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10916-PA 1..792 17..807 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:15 Download gff for BS06248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10916-PA 1..792 17..807 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:38 Download gff for BS06248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10916-RA 136..940 11..816 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:11:39 Download gff for BS06248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10916-RA 136..940 11..816 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:11:39 Download gff for BS06248.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18173804..18174608 11..816 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:38 Download gff for BS06248.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14061309..14062113 11..816 99   Plus

BS06248.complete Sequence

824 bp (824 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635414

> BS06248.complete
GAAGTTATCAGTCGACATGGAGAGTAATAGTAGTGAAATGGAAGGTAACG
GCGGAAAAATCGCAGAAACTGCACCCACAAATGACTCATCACCTTCACTG
AACATTTTATGTGCAATTTGCAACGAGTTTTTCCGGGCCAACGACATAAT
TTTCTCAACTTCACGGTGCGGTCATGTATTCCACAAGGACTGCCTCACCC
GATGGCTGAATAGGTCCAGGACCTGCCCCCAATGCAGAGACCCATGCGAC
CGACGACGCGTGCACCGATTGTACCTAAACTTCGCCGAGGCCCCGGAGTT
CGATGACACCGAATTGCCCAAGGTGGCCATGGATTGGGTGCCCATTGATC
TGGACAGAGACAGCTTACCGGATGCCCACCTGCCGCCCGAGGGAGCTGTG
CAGTGTGGCACCAACGAAGACGGACTGCCCACGTATGTGGCCAGAGGATA
TTACCACGACGATCTCCTGCCTGCTCCTTATGTACCGGAAAAGAAGGCTG
CCTTCGGTTCGCACAGCTGTAGCGCCCGAACTCTGACCGATGATGTCGAG
ATCCTGGTGCTCAACGACTGTGACTACAAGTGGGTGCCCGGACAGCATGG
AACATATCCGCGGGATGCTCTGAACACGGGCTACTCCGAGCTGGGTGAGG
TCACCTACACGGGTCGTGGTCTTTACCAGGGTATCCTGCGTCTGGGCAAG
GTGCATCCTTCCCACAAGGTCATGTACATCCCGCATCATGGTCAAGAGGT
GAGCGTAAACACCTACGAAGTCCTGGTGGTCACCCCACGTGACCAGGCAG
ATCGATGAAAGCTTTCTAGACCAT

BS06248.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:20:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG10916-RB 792 CG10916-PB 1..792 17..808 3960 100 Plus
CG10916-RA 792 CG10916-PA 1..792 17..808 3960 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG10916-RB 2057 CG10916-RB 142..933 17..808 3960 100 Plus
CG10916-RA 1015 CG10916-RA 142..933 17..808 3960 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18173810..18174601 17..808 3960 100 Plus
2R 25286936 2R 18173275..18173352 348..425 300 92.3 Plus
2R 25286936 2R 18173353..18173448 683..778 285 86.5 Plus
Blast to na_te.dros performed on 2014-11-27 14:20:41 has no hits.

BS06248.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:03 Download gff for BS06248.complete
Subject Subject Range Query Range Percent Splice Strand
CG10916-RA 1..792 17..808 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:37 Download gff for BS06248.complete
Subject Subject Range Query Range Percent Splice Strand
CG10916-RA 134..938 11..817 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:28 Download gff for BS06248.complete
Subject Subject Range Query Range Percent Splice Strand
CG10916-RA 142..932 17..807 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:03 Download gff for BS06248.complete
Subject Subject Range Query Range Percent Splice Strand
CG10916-RA 134..938 11..817 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:13 Download gff for BS06248.complete
Subject Subject Range Query Range Percent Splice Strand
CG10916-RA 142..932 17..807 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:13 Download gff for BS06248.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18173810..18174600 17..807 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:28 Download gff for BS06248.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 14061315..14062105 17..807 100   Plus

BS06248.pep Sequence

Translation from 16 to 807

> BS06248.pep
MESNSSEMEGNGGKIAETAPTNDSSPSLNILCAICNEFFRANDIIFSTSR
CGHVFHKDCLTRWLNRSRTCPQCRDPCDRRRVHRLYLNFAEAPEFDDTEL
PKVAMDWVPIDLDRDSLPDAHLPPEGAVQCGTNEDGLPTYVARGYYHDDL
LPAPYVPEKKAAFGSHSCSARTLTDDVEILVLNDCDYKWVPGQHGTYPRD
ALNTGYSELGEVTYTGRGLYQGILRLGKVHPSHKVMYIPHHGQEVSVNTY
EVLVVTPRDQADR*

BS06248.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10916-PB 263 CG10916-PB 1..263 1..263 1446 100 Plus
CG10916-PA 263 CG10916-PA 1..263 1..263 1446 100 Plus
CG44250-PB 286 CG44250-PB 8..147 116..259 261 42.4 Plus
CG44250-PC 297 CG44250-PC 19..158 116..259 261 42.4 Plus
CG32633-PB 285 CG32633-PB 156..283 124..254 259 41.2 Plus
CG44250-PB 286 CG44250-PB 158..283 124..253 203 36.2 Plus
CG44250-PC 297 CG44250-PC 169..294 124..253 203 36.2 Plus