Clone Sequence Records
BS06248.3prime Sequence
822 bp (761 high quality bases) assembled on 2005-12-03
> BS06248.3prime
ATGGTCTAGAAAGCTTTCATCGATCTGCCTGGTCACGTGGGGTGACCACC
AGGACTTCGTAGGTGTTTACGCTCACCTCTTGACCATGATGCGGGATGTA
CATGACCTTGTGGGAAGGATGCACCTTGCCCAGACGCAGGATACCCTGGT
AAAGACCACGACCCGTGTAGGTGACCTCACCCAGCTCGGAGTAGCCCGTG
TTCAGAGCATCCCGCGGATATGTTCCATGCTGTCCGGGCACCCACTTGTA
GTCACAGTCGTTGAGCACCAGGATCTCGACATCATCGGTCAGAGTTCGGG
CGCTACAGCTGTGCGAACCGAAGGCAGCCTTCTTTTCCGGTACATAAGGA
GCAGGCAGGAGATCGTCGTGGTAATATCCTCTGGCCACATACGTGGGCAG
TCCGTCTTCGTTGGTGCCACACTGCACAGCTCCCTCGGGCGGCAGGTGGG
CATCCGGTAAGCTGTCTCTGTCCAGATCAATGGGCACCCAATCCATGGCC
ACCTTGGGCAATTCGGTGTCATCGAACTCCGGGGCCTCGGCGAAGTTTAG
GTACAATCGGTGCACGCGTCGTCGGTCGCATGGGTCTCTGCATTGGGGGC
AGGTCCTGGACCTATTCAGCCATCGGGTGAGGCAGTCCTTGTGGAATACA
TGACCGCACCGTGAAGTTGAGAAAATTATGTCGTTGGCCCGGAAAAACTC
GTTGCAAATTGCACATAAAATGTTCAGTGAAGGTGATGAGTCATTTGTGG
GTGCAGTTTCTGCGATTTTTCCGCCGTTACCTTCCATTTCACTACTATTA
CTCTCCATGTCGACTGATAACT
BS06248.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10916-PA | 792 | CG10916-RA | 1..792 | 808..17 | 3960 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 01:34:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10916-RB | 2057 | CG10916-RB | 142..933 | 808..17 | 3960 | 100 | Minus |
CG10916-RA | 1015 | CG10916-RA | 142..933 | 808..17 | 3960 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 01:34:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18173810..18174601 | 808..17 | 3960 | 100 | Minus |
2R | 25286936 | 2R | 18173275..18173352 | 477..400 | 300 | 92.3 | Minus |
2R | 25286936 | 2R | 18173353..18173448 | 142..47 | 285 | 86.5 | Minus |
Blast to na_te.dros performed on 2015-02-09 01:34:28 has no hits.
BS06248.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:10 Download gff for
BS06248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10916-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:13 Download gff for
BS06248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10916-PA | 1..792 | 17..808 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-12 05:55:45 Download gff for
BS06248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10916-RA | 136..940 | 8..814 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 04:09:33 Download gff for
BS06248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10916-RA | 136..940 | 8..814 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 04:09:33 Download gff for
BS06248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18173804..18174608 | 8..814 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-12 05:55:45 Download gff for
BS06248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14061309..14062113 | 8..814 | 99 | | Minus |
BS06248.5prime Sequence
821 bp (768 high quality bases) assembled on 2005-12-03
> BS06248.5prime
GAAGTTATCAGTCGACATGGAGAGTAATAGTAGTGAAATGGAAGGTAACG
GCGGAAAAATCGCAGAAACTGCACCCACAAATGACTCATCACCTTCACTG
AACATTTTATGTGCAATTTGCAACGAGTTTTTCCGGGCCAACGACATAAT
TTTCTCAACTTCACGGTGCGGTCATGTATTCCACAAGGACTGCCTCACCC
GATGGCTGAATAGGTCCAGGACCTGCCCCCAATGCAGAGACCCATGCGAC
CGACGACGCGTGCACCGATTGTACCTAAACTTCGCCGAGGCCCCGGAGTT
CGATGACACCGAATTGCCCAAGGTGGCCATGGATTGGGTGCCCATTGATC
TGGACAGAGACAGCTTACCGGATGCCCACCTGCCGCCCGAGGGAGCTGTG
CAGTGTGGCACCAACGAAGACGGACTGCCCACGTATGTGGCCAGAGGATA
TTACCACGACGATCTCCTGCCTGCTCCTTATGTACCGGAAAAGAAGGCTG
CCTTCGGTTCGCACAGCTGTAGCGCCCGAACTCTGACCGATGATGTCGAG
ATCCTGGTGCTCAACGACTGTGACTACAAGTGGGTGCCCGGACAGCATGG
AACATATCCGCGGGATGCTCTGAACACGGGCTACTCCGAGCTGGGTGAGG
TCACCTACACGGGTCGTGGTCTTTACCAGGGTATCCTGCGTCTGGGCAAG
GTGCATCCTTCCCACAAGGTCATGTACATCCCGCATCATGGTCAAGAGGT
GAGCGTAAACACCTACGAAGTCCTGGTGGTCACCCACGTGACCAGGCAGA
TCGATGAAAGCTTTCTAGACC
BS06248.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10916-PA | 792 | CG10916-RA | 1..769 | 17..785 | 3845 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:56:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10916-RB | 2057 | CG10916-RB | 142..933 | 17..807 | 3935 | 99.9 | Plus |
CG10916-RA | 1015 | CG10916-RA | 142..933 | 17..807 | 3935 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18173810..18174601 | 17..807 | 3910 | 99.9 | Plus |
2R | 25286936 | 2R | 18173275..18173352 | 348..425 | 300 | 92.3 | Plus |
2R | 25286936 | 2R | 18173353..18173448 | 683..778 | 285 | 86.5 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:56:16 has no hits.
BS06248.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:11 Download gff for
BS06248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10916-PA | 1..792 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:15 Download gff for
BS06248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10916-PA | 1..792 | 17..807 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:38 Download gff for
BS06248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10916-RA | 136..940 | 11..816 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:11:39 Download gff for
BS06248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10916-RA | 136..940 | 11..816 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:11:39 Download gff for
BS06248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18173804..18174608 | 11..816 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:38 Download gff for
BS06248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14061309..14062113 | 11..816 | 99 | | Plus |
BS06248.complete Sequence
824 bp (824 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635414
> BS06248.complete
GAAGTTATCAGTCGACATGGAGAGTAATAGTAGTGAAATGGAAGGTAACG
GCGGAAAAATCGCAGAAACTGCACCCACAAATGACTCATCACCTTCACTG
AACATTTTATGTGCAATTTGCAACGAGTTTTTCCGGGCCAACGACATAAT
TTTCTCAACTTCACGGTGCGGTCATGTATTCCACAAGGACTGCCTCACCC
GATGGCTGAATAGGTCCAGGACCTGCCCCCAATGCAGAGACCCATGCGAC
CGACGACGCGTGCACCGATTGTACCTAAACTTCGCCGAGGCCCCGGAGTT
CGATGACACCGAATTGCCCAAGGTGGCCATGGATTGGGTGCCCATTGATC
TGGACAGAGACAGCTTACCGGATGCCCACCTGCCGCCCGAGGGAGCTGTG
CAGTGTGGCACCAACGAAGACGGACTGCCCACGTATGTGGCCAGAGGATA
TTACCACGACGATCTCCTGCCTGCTCCTTATGTACCGGAAAAGAAGGCTG
CCTTCGGTTCGCACAGCTGTAGCGCCCGAACTCTGACCGATGATGTCGAG
ATCCTGGTGCTCAACGACTGTGACTACAAGTGGGTGCCCGGACAGCATGG
AACATATCCGCGGGATGCTCTGAACACGGGCTACTCCGAGCTGGGTGAGG
TCACCTACACGGGTCGTGGTCTTTACCAGGGTATCCTGCGTCTGGGCAAG
GTGCATCCTTCCCACAAGGTCATGTACATCCCGCATCATGGTCAAGAGGT
GAGCGTAAACACCTACGAAGTCCTGGTGGTCACCCCACGTGACCAGGCAG
ATCGATGAAAGCTTTCTAGACCAT
BS06248.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:20:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10916-RB | 792 | CG10916-PB | 1..792 | 17..808 | 3960 | 100 | Plus |
CG10916-RA | 792 | CG10916-PA | 1..792 | 17..808 | 3960 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:20:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10916-RB | 2057 | CG10916-RB | 142..933 | 17..808 | 3960 | 100 | Plus |
CG10916-RA | 1015 | CG10916-RA | 142..933 | 17..808 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:20:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18173810..18174601 | 17..808 | 3960 | 100 | Plus |
2R | 25286936 | 2R | 18173275..18173352 | 348..425 | 300 | 92.3 | Plus |
2R | 25286936 | 2R | 18173353..18173448 | 683..778 | 285 | 86.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:20:41 has no hits.
BS06248.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:03 Download gff for
BS06248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10916-RA | 1..792 | 17..808 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:37 Download gff for
BS06248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10916-RA | 134..938 | 11..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:40:28 Download gff for
BS06248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10916-RA | 142..932 | 17..807 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:03 Download gff for
BS06248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10916-RA | 134..938 | 11..817 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:09:13 Download gff for
BS06248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10916-RA | 142..932 | 17..807 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:09:13 Download gff for
BS06248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18173810..18174600 | 17..807 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:40:28 Download gff for
BS06248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 14061315..14062105 | 17..807 | 100 | | Plus |
BS06248.pep Sequence
Translation from 16 to 807
> BS06248.pep
MESNSSEMEGNGGKIAETAPTNDSSPSLNILCAICNEFFRANDIIFSTSR
CGHVFHKDCLTRWLNRSRTCPQCRDPCDRRRVHRLYLNFAEAPEFDDTEL
PKVAMDWVPIDLDRDSLPDAHLPPEGAVQCGTNEDGLPTYVARGYYHDDL
LPAPYVPEKKAAFGSHSCSARTLTDDVEILVLNDCDYKWVPGQHGTYPRD
ALNTGYSELGEVTYTGRGLYQGILRLGKVHPSHKVMYIPHHGQEVSVNTY
EVLVVTPRDQADR*
BS06248.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10916-PB | 263 | CG10916-PB | 1..263 | 1..263 | 1446 | 100 | Plus |
CG10916-PA | 263 | CG10916-PA | 1..263 | 1..263 | 1446 | 100 | Plus |
CG44250-PB | 286 | CG44250-PB | 8..147 | 116..259 | 261 | 42.4 | Plus |
CG44250-PC | 297 | CG44250-PC | 19..158 | 116..259 | 261 | 42.4 | Plus |
CG32633-PB | 285 | CG32633-PB | 156..283 | 124..254 | 259 | 41.2 | Plus |
CG44250-PB | 286 | CG44250-PB | 158..283 | 124..253 | 203 | 36.2 | Plus |
CG44250-PC | 297 | CG44250-PC | 169..294 | 124..253 | 203 | 36.2 | Plus |