Clone Sequence Records
BS06250.3prime Sequence
939 bp (857 high quality bases) assembled on 2005-12-03
> BS06250.3prime
ATGGTCTAGAAAGCTTTTATGCATTCCAGTAAAGGGTGTTATCATAGATC
GACGGATCGGTAGCCAGTGGTACCAGGAACATCCATCCAACAAATCCAGC
TAAGTAGAGAATAATGGCCACTACTCGTCGCCAGAGATCCTGCTGCCACA
GATCCTGCAGATCCGGCAGACCCATGTGATTGCAAAACGCGTGCACCAAG
ATGGGAGCCATCACATGACCTGTACGGGCAAATAGAAAGGCCGAATAGAA
GCCAAATAGCGTGGTGTAGATGAACTGGAACAGTCCAATCAATAGGGCAG
TGCTCAACTCCACGCCTAAGCTCAGGCGTTCGGCTATGTGATGCAAGTGG
GCTACTCCGAAGAAAAGCGGCGTTATGAAAACGGCGACCAGGGGCGAAAA
GCTCTGCAGGATCAGGGGCATCATGCAGGCTCGGAACACGAACTCCTCGC
TCAGCGGTGCTATCACATGGTTGCGCACCCAGATGATGCTGCCAAATGAT
CCCCTCCAGTAGTCCAGATCGAAGTAGGAGCGCACGGACTCGTTCTGCAT
GTTGACAAAGATGGGTCCCAGGAAGAGCAGCACCGTCAGGCTGTATGGTA
TAACAACAGCCTGCCACAATCCCTCCAAGCGCAAACCGAGCAGCTTGGGA
AATGGTACCCGGCTGAGCAGCTCCGGCGATGAGAAGAAGTAAACGAAGAA
CGGGGCTGCCAGCATCACCATGGACACACTGGCGAATCTTCTCTTGACCG
TGGTTGGATGATCCCGGTTGTGTTTGGTGCTCCAGATGTAGAGGCTACCC
ACGTACAGAACAGCCAGAACGAAGCAACAGCTCACCGAAGTGGCCACCGG
GATCTGGGGGCATGATTCGTGGACTACATTTTCTTGCATGGTGACTTCGG
CTTCCGTCTCACTCAGGTTTTTCATGTCGACTGATAACT
BS06250.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4852-PA | 909 | Sras-RA | 1..909 | 925..17 | 4470 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 18:03:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sras-RA | 1271 | CG4852-RA | 88..996 | 925..17 | 4500 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 18:03:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5564325..5564828 | 520..17 | 2505 | 99.8 | Minus |
| 3L | 28110227 | 3L | 5563861..5564266 | 925..520 | 2000 | 99.5 | Minus |
Blast to na_te.dros performed on 2015-02-02 18:03:16 has no hits.
BS06250.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:14 Download gff for
BS06250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sras-PA | 1..909 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:19 Download gff for
BS06250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4852-PA | 1..909 | 17..925 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 18:08:33 Download gff for
BS06250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sras-RA | 86..1003 | 11..928 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 20:50:17 Download gff for
BS06250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sras-RA | 86..1003 | 11..928 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 20:50:17 Download gff for
BS06250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5563859..5564266 | 520..928 | 99 | -> | Minus |
| 3L | 5564326..5564835 | 11..519 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 18:08:33 Download gff for
BS06250.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5556959..5557366 | 520..928 | 99 | -> | Minus |
| arm_3L | 5557426..5557935 | 11..519 | 99 | | Minus |
BS06250.5prime Sequence
925 bp (798 high quality bases) assembled on 2005-12-03
> BS06250.5prime
GAAGTTATCAGTCGACATGAAAAACCTGAGTGAGACGGAAGCCGAAGTCA
CCATGCAAGAAAATGTAGTCCACGAATCATTGCCCCAGATCCCGGTGGCC
ACTTCGGTGAGCTGTTGCTTCGTTCTGGCTGTTCTGTACGTGGGTAGCCT
CTACATCTGGAGCACCAAACACAACCGGGATCATCCAACCACGGTCAAGA
GAAGATTCGCCAGTGTGTCCATGGTGATGCTGGCAGCCCCGTTCTTCGTT
TACTTCTTCTCATCGCCGGAGCTGCTCAGCCGGGTACCATTTCCCAAGCT
GCTCGGTTTGCGCTTGGAGGGATTGTGGCAGGCTGTTGTTATACCATACA
GCCTGACGGTGCTGCTCTTCCTGGGACCCATCTTTGTCAACATGCAGAAC
GAGTCCGTGCGCTCCTACTTCGATCTGGACTACTGGAGGGGATCATTTGG
CAGCATCATCTGGGTGCGCAACCATGTGATAGCACCGCTGAGCGAGGAGT
TCGTGTTCCGAGCCTGCATGATGCCCCTGATCCTGCAGAGCTTTTCGCCC
CTGGTCGCCGTTTTCATAACGCCGCTTTTCTTCGGAGTAGCCCACTTGCA
TCACATAGCCGAACGCCTGAGCTTAGGCGTGGAGTTGAGCACTGCCCTAT
TGATTGGACTGTTCCAGTTCATCTACACCACGCTATTTGGCTTCTATTCG
GCCTTTCTATTTGCCCGTACAGGTCATGTGATGGCTCCCATCTTGGTGCA
CGCGTTTTGCAATCACATGGGTCTGCCGGATCTGCAGGATCTGTGGCAGC
AGGATCTCTGGCGACGAGTAGTGGCCATTATTCTCTACTTAGCTGGATTT
GTTGGATGGATGTTCCTGGTACCACTGGCTACCGATCCGTCGATCTATGA
TACACCCTTTACTGGATTGCATAAA
BS06250.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4852-PA | 909 | Sras-RA | 1..886 | 17..902 | 4405 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 19:56:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sras-RA | 1271 | CG4852-RA | 88..996 | 17..924 | 4490 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 19:56:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5564325..5564828 | 422..924 | 2440 | 99.4 | Plus |
| 3L | 28110227 | 3L | 5563861..5564266 | 17..422 | 2030 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 19:56:42 has no hits.
BS06250.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:15 Download gff for
BS06250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sras-PA | 1..907 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:20 Download gff for
BS06250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4852-PA | 1..907 | 17..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:32:41 Download gff for
BS06250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sras-RA | 86..994 | 14..922 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:12:31 Download gff for
BS06250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sras-RA | 86..994 | 14..922 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:12:31 Download gff for
BS06250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5563859..5564266 | 14..422 | 99 | -> | Plus |
| 3L | 5564326..5564826 | 423..922 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:32:41 Download gff for
BS06250.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5556959..5557366 | 14..422 | 99 | -> | Plus |
| arm_3L | 5557426..5557926 | 423..922 | 99 | | Plus |
BS06250.complete Sequence
941 bp (941 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635415
> BS06250.complete
GAAGTTATCAGTCGACATGAAAAACCTGAGTGAGACGGAAGCCGAAGTCA
CCATGCAAGAAAATGTAGTCCACGAATCATTGCCCCAGATCCCGGTGGCC
ACTTCGGTGAGCTGTTGCTTCGTTCTGGCTGTTCTGTACGTGGGTAGCCT
CTACATCTGGAGCACCAAACACAACCGGGATCATCCAACCACGGTCAAGA
GAAGATTCGCCAGTGTGTCCATGGTGATGCTGGCAGCCCCGTTCTTCGTT
TACTTCTTCTCATCGCCGGAGCTGCTCAGCCGGGTACCATTTCCCAAGCT
GCTCGGTTTGCGCTTGGAGGGATTGTGGCAGGCTGTTGTTATACCATACA
GCCTGACGGTGCTGCTCTTCCTGGGACCCATCTTTGTCAACATGCAGAAC
GAGTCCGTGCGCTCCTACTTCGATCTGGACTACTGGAGGGGATCATTTGG
CAGCATCATCTGGGTGCGCAACCATGTGATAGCACCGCTGAGCGAGGAGT
TCGTGTTCCGAGCCTGCATGATGCCCCTGATCCTGCAGAGCTTTTCGCCC
CTGGTCGCCGTTTTCATAACGCCGCTTTTCTTCGGAGTAGCCCACTTGCA
TCACATAGCCGAACGCCTGAGCTTAGGCGTGGAGTTGAGCACTGCCCTAT
TGATTGGACTGTTCCAGTTCATCTACACCACGCTATTTGGCTTCTATTCG
GCCTTTCTATTTGCCCGTACAGGTCATGTGATGGCTCCCATCTTGGTGCA
CGCGTTTTGCAATCACATGGGTCTGCCGGATCTGCAGGATCTGTGGCAGC
AGGATCTCTGGCGACGAGTAGTGGCCATTATTCTCTACTTAGCTGGATTT
GTTGGATGGATGTTCCTGGTACCACTGGCTACCGATCCGTCGATCTATGA
TAACACCCTTTACTGGAATGCATAAAAGCTTTCTAGACCAT
BS06250.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:23:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sras-RA | 909 | CG4852-PA | 1..909 | 17..925 | 4530 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:23:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sras-RA | 1271 | CG4852-RA | 88..996 | 17..925 | 4530 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:23:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5564325..5564828 | 422..925 | 2505 | 99.8 | Plus |
| 3L | 28110227 | 3L | 5563861..5564266 | 17..422 | 2030 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:23:42 has no hits.
BS06250.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:04 Download gff for
BS06250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sras-RA | 1..909 | 17..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:38 Download gff for
BS06250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sras-RA | 180..1097 | 14..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:46 Download gff for
BS06250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sras-RA | 88..994 | 17..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:04 Download gff for
BS06250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sras-RA | 180..1097 | 14..931 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:03 Download gff for
BS06250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sras-RA | 88..994 | 17..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:03 Download gff for
BS06250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5563861..5564266 | 17..422 | 100 | -> | Plus |
| 3L | 5564326..5564826 | 423..923 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:46 Download gff for
BS06250.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5556961..5557366 | 17..422 | 100 | -> | Plus |
| arm_3L | 5557426..5557926 | 423..923 | 99 | | Plus |
BS06250.pep Sequence
Translation from 16 to 924
> BS06250.pep
MKNLSETEAEVTMQENVVHESLPQIPVATSVSCCFVLAVLYVGSLYIWST
KHNRDHPTTVKRRFASVSMVMLAAPFFVYFFSSPELLSRVPFPKLLGLRL
EGLWQAVVIPYSLTVLLFLGPIFVNMQNESVRSYFDLDYWRGSFGSIIWV
RNHVIAPLSEEFVFRACMMPLILQSFSPLVAVFITPLFFGVAHLHHIAER
LSLGVELSTALLIGLFQFIYTTLFGFYSAFLFARTGHVMAPILVHAFCNH
MGLPDLQDLWQQDLWRRVVAIILYLAGFVGWMFLVPLATDPSIYDNTLYW
NA*
BS06250.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sras-PA | 302 | CG4852-PA | 1..302 | 1..302 | 1584 | 100 | Plus |
