Clone Sequence Records
BS06251.3prime Sequence
810 bp (809 high quality bases) assembled on 2005-12-03
> BS06251.3prime
ATGGTCTAGAAAGCTTCTACTTAATGTACTTGTCCATGAACTTCTTGTGG
AAATCGGAGCGCAGGGCGTCATTGACGAAGTGCGTCTTCTTATCGGGCGC
AGATCTGGCGCAATTCTTAAAGACCACATCATCGTCCCAGCGGCGCTTTA
TCTTTAGATCACCGCCCAGTCCAGAGGCACGTCCCGCTGCCGAGGCGGCG
GTGCCGGGCTCATAGTTCATCAGTGGATTGCCGGACAGGATGTTCTCCAT
GCGTATGCGTTCGTCCTCCTGCTTCTTTTCCGACTCGCGACGCGCCGTCT
CCTGCAGACGTTCCTGCTTGATCTTCTGCAGCTCGGCCAGCAGGGCGGCA
TCATCGTCATCGGAATCGCTGTCCGAATCGGAGCTATCGTTGTCCAGCGG
CTCATCGGCGTCCATATTGGCGGCCTGCTGCTGAGCCGCCTGCTGCGCTT
GCTGCTGCCCTGCGTCCGGCTTGGAACGCTTTGCGGCACTGCTGCCACCG
CCGGCGTTGTTCGCCTCAATCGCCTTGCGTACAATGGAGGGCAGTGCCTT
GCCCGACGACGACGAAGTGGCTCCCGTTCCGGAGCGCGCCTCACGTTCGC
GCTCCTCCAGCTCCTTGCGGAAGTCACGGTTGCGGTTCTCATCGCTGGTG
CCCTGGCCAGTCTCCCTGTATTTCAGTTTCGTGTGGCCTGGCAAATCGCG
ACTGGAGTACTGCTTGCTCAGTGCACTCAGATCCTTTTCGCCGCGACCGG
ATCCTCCGCGGGCTGGATCGAAGGTCGGACGCGCTGCTGTGGTCATGTCG
ACTGATAACT
BS06251.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12135-PA | 780 | c12.1-RA | 1..780 | 796..17 | 3900 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:05:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| c12.1-RA | 1246 | CG12135-RA | 102..881 | 796..17 | 3900 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:04:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9318280..9318931 | 17..668 | 3260 | 100 | Plus |
| X | 23542271 | X | 9318991..9319122 | 665..796 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:04:59 has no hits.
BS06251.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:16 Download gff for
BS06251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c12.1-PA | 1..780 | 17..796 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:22 Download gff for
BS06251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12135-PA | 1..780 | 17..796 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:50:23 Download gff for
BS06251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c12.1-RA | 94..890 | 8..803 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:55:43 Download gff for
BS06251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c12.1-RA | 94..890 | 8..803 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:55:43 Download gff for
BS06251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9318271..9318928 | 8..665 | 99 | <- | Plus |
| X | 9318992..9319130 | 666..803 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:50:23 Download gff for
BS06251.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9213025..9213163 | 666..803 | 97 | | Plus |
| arm_X | 9212304..9212961 | 8..665 | 99 | <- | Plus |
BS06251.5prime Sequence
810 bp (809 high quality bases) assembled on 2005-12-03
> BS06251.5prime
GAAGTTATCAGTCGACATGACCACAGCAGCGCGTCCGACCTTCGATCCAG
CCCGCGGAGGATCCGGTCGCGGCGAAAAGGATCTGAGTGCACTGAGCAAG
CAGTACTCCAGTCGCGATTTGCCAGGCCACACGAAACTGAAATACAGGGA
GACTGGCCAGGGCACCAGCGATGAGAACCGCAACCGTGACTTCCGCAAGG
AGCTGGAGGAGCGCGAACGTGAGGCGCGCTCCGGAACGGGAGCCACTTCG
TCGTCGTCGGGCAAGGCACTGCCCTCCATTGTACGCAAGGCGATTGAGGC
GAACAACGCCGGCGGTGGCAGCAGTGCCGCAAAGCGTTCCAAGCCGGACG
CAGGGCAGCAGCAAGCGCAGCAGGCGGCTCAGCAGCAGGCCGCCAATATG
GACGCCGATGAGCCGCTGGACAACGATAGCTCCGATTCGGACAGCGATTC
CGATGACGATGATGCCGCCCTGCTGGCCGAGCTGCAGAAGATCAAGCAGG
AACGTCTGCAGGAGACGGCGCGTCGCGAGTCGGAAAAGAAGCAGGAGGAC
GAACGCATACGCATGGAGAACATCCTGTCCGGCAATCCACTGATGAACTA
TGAGCCCGGCACCGCCGCCTCGGCAGCGGGACGTGCCTCTGGACTGGGCG
GTGATCTAAAGATAAAGCGCCGCTGGGACGATGATGTGGTCTTTAAGAAT
TGCGCCAGATCTGCGCCCGATAAGAAGACGCACTTCGTCAATGACGCCCT
GCGCTCCGATTTCCACAAGAAGTTCATGGACAAGTACATTAAGTAGAAGC
TTTCTAGACC
BS06251.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12135-PA | 780 | c12.1-RA | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| c12.1-RA | 1246 | CG12135-RA | 102..881 | 17..796 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9318280..9318931 | 796..145 | 3260 | 100 | Minus |
| X | 23542271 | X | 9318991..9319122 | 148..17 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:06:52 has no hits.
BS06251.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:17 Download gff for
BS06251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c12.1-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:24 Download gff for
BS06251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12135-PA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:07:49 Download gff for
BS06251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c12.1-RA | 94..890 | 10..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:29:27 Download gff for
BS06251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c12.1-RA | 94..890 | 10..805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:29:27 Download gff for
BS06251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9318271..9318928 | 148..805 | 99 | <- | Minus |
| X | 9318992..9319130 | 10..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:07:49 Download gff for
BS06251.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9212304..9212961 | 148..805 | 99 | <- | Minus |
| arm_X | 9213025..9213163 | 10..147 | 97 | | Minus |
BS06251.complete Sequence
812 bp (812 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635416
> BS06251.complete
GAAGTTATCAGTCGACATGACCACAGCAGCGCGTCCGACCTTCGATCCAG
CCCGCGGAGGATCCGGTCGCGGCGAAAAGGATCTGAGTGCACTGAGCAAG
CAGTACTCCAGTCGCGATTTGCCAGGCCACACGAAACTGAAATACAGGGA
GACTGGCCAGGGCACCAGCGATGAGAACCGCAACCGTGACTTCCGCAAGG
AGCTGGAGGAGCGCGAACGTGAGGCGCGCTCCGGAACGGGAGCCACTTCG
TCGTCGTCGGGCAAGGCACTGCCCTCCATTGTACGCAAGGCGATTGAGGC
GAACAACGCCGGCGGTGGCAGCAGTGCCGCAAAGCGTTCCAAGCCGGACG
CAGGGCAGCAGCAAGCGCAGCAGGCGGCTCAGCAGCAGGCCGCCAATATG
GACGCCGATGAGCCGCTGGACAACGATAGCTCCGATTCGGACAGCGATTC
CGATGACGATGATGCCGCCCTGCTGGCCGAGCTGCAGAAGATCAAGCAGG
AACGTCTGCAGGAGACGGCGCGTCGCGAGTCGGAAAAGAAGCAGGAGGAC
GAACGCATACGCATGGAGAACATCCTGTCCGGCAATCCACTGATGAACTA
TGAGCCCGGCACCGCCGCCTCGGCAGCGGGACGTGCCTCTGGACTGGGCG
GTGATCTAAAGATAAAGCGCCGCTGGGACGATGATGTGGTCTTTAAGAAT
TGCGCCAGATCTGCGCCCGATAAGAAGACGCACTTCGTCAATGACGCCCT
GCGCTCCGATTTCCACAAGAAGTTCATGGACAAGTACATTAAGTAGAAGC
TTTCTAGACCAT
BS06251.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:55:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| c12.1-RA | 780 | CG12135-PA | 1..780 | 17..796 | 3900 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:55:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| c12.1-RA | 1246 | CG12135-RA | 102..881 | 17..796 | 3900 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:55:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 9318280..9318931 | 796..145 | 3260 | 100 | Minus |
| X | 23542271 | X | 9318991..9319122 | 148..17 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:55:33 has no hits.
BS06251.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:07 Download gff for
BS06251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c12.1-RA | 1..780 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:40 Download gff for
BS06251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c12.1-RA | 115..911 | 10..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:38:46 Download gff for
BS06251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c12.1-RA | 102..881 | 17..796 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:07 Download gff for
BS06251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c12.1-RA | 115..911 | 10..805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:13:44 Download gff for
BS06251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| c12.1-RA | 102..881 | 17..796 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:13:44 Download gff for
BS06251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 9318280..9318928 | 148..796 | 100 | <- | Minus |
| X | 9318992..9319122 | 17..147 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:38:46 Download gff for
BS06251.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9212313..9212961 | 148..796 | 100 | <- | Minus |
| arm_X | 9213025..9213155 | 17..147 | 100 | | Minus |
BS06251.pep Sequence
Translation from 16 to 795
> BS06251.pep
MTTAARPTFDPARGGSGRGEKDLSALSKQYSSRDLPGHTKLKYRETGQGT
SDENRNRDFRKELEEREREARSGTGATSSSSGKALPSIVRKAIEANNAGG
GSSAAKRSKPDAGQQQAQQAAQQQAANMDADEPLDNDSSDSDSDSDDDDA
ALLAELQKIKQERLQETARRESEKKQEDERIRMENILSGNPLMNYEPGTA
ASAAGRASGLGGDLKIKRRWDDDVVFKNCARSAPDKKTHFVNDALRSDFH
KKFMDKYIK*
BS06251.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| c12.1-PA | 259 | CG12135-PA | 1..259 | 1..259 | 1319 | 100 | Plus |
