Clone Sequence Records
BS06255.3prime Sequence
801 bp (800 high quality bases) assembled on 2005-12-03
> BS06255.3prime
ATGGTCTAGAAAGCTTTTATTCATCATCCTCCTCTTCGTCATCATCGTCG
TCGTTGTCATCCATGGCCTCGGCCTCGGCCTCCTCTTCCATTGCGCTATC
AGCCTGTTCCTCGTCGTTCACATCATCCTCGACATGCAGCTGGAAGCCTT
CGCTTTTTGTCCACGAGCACTTCATGGTCAGCCGAAATTTGGCCATGGGC
TTGCCCACCAGCTTGAGGATTCTCGCCTGTTCGGGTGTTAGAACTTTGCC
CTCCTCACAAACCGTGTAGTCACTGTACAGCGTAACGATTCCCTTCTCCA
ATTTGGTGGGCAGGCCCAGGGAACGCAGATGCGGTTCCATAGAGTGGGCG
AAGTCCTCTAGGGGACCTGCTGGCAGGGTAACCGTTTCCGTGGCCACAAA
GCCACTGCGTGCGTATTCCACGGCCCAGTAGTTTTCTGCCCACTCCAGGA
CTTCCTCCTTGGATTTGTCCGTGAAAAGCAGTCCCACCTGGCCAGTTAAT
CGCTTGGATAGCTTGTGCAATTCCGGCTCCACTTCCTCGCTCTTCGTGCG
ACCCAAGCCAATCTGCATAACACGATTCTTGCCAAAGATAAAACGAGAAT
TCTTTTTCAACTCCTGTCGCAGATCCTTCAGCAAGCTATTCCTCATGTTC
TGAACTTGGAAAACGAATATATTTGGGTATTTGCCCACGCAGAACCGAAT
GTCGTCCACAATGCGCTGTTTCCAAGCCAGACCCTTGCGGTCGGTTTTGG
TCAGGGAAACTTTCTTATCACGTTTGGAGCGCGGCATGTCGACTGATAAC
T
BS06255.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1381-PA | 771 | CG1381-RA | 1..771 | 787..17 | 3855 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:05:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpLP0-like-RA | 948 | CG1381-RA | 105..876 | 787..16 | 3860 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:05:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10098590..10099087 | 16..513 | 2490 | 100 | Plus |
2R | 25286936 | 2R | 10099146..10099395 | 512..761 | 1250 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:05:06 has no hits.
BS06255.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:24 Download gff for
BS06255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1381-PA | 1..771 | 17..787 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:33 Download gff for
BS06255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1381-PA | 1..771 | 17..787 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:50:24 Download gff for
BS06255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpLP0-like-RA | 100..883 | 10..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:56:17 Download gff for
BS06255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpLP0-like-RA | 100..883 | 10..795 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:56:17 Download gff for
BS06255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10098583..10099085 | 10..511 | 99 | <- | Plus |
2R | 10099146..10099393 | 512..759 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:50:24 Download gff for
BS06255.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5986088..5986590 | 10..511 | 99 | <- | Plus |
arm_2R | 5986651..5986898 | 512..759 | 100 | <- | Plus |
BS06255.5prime Sequence
801 bp (784 high quality bases) assembled on 2005-12-03
> BS06255.5prime
GAAGTTATCAGTCGACATGCCGCGCTCCAAACGTGATAAGAAAGTTTCCC
TGACCAAAACCGACCGCAAGGGTCTGGCTTGGAAACAGCGCATTGTGGAC
GACATTCGGTTCTGCGTGGGCAAATACCCAAATATATTCGTTTTCCAAGT
TCAGAACATGAGGAATAGCTTGCTGAAGGATCTGCGACAGGAGTTGAAAA
AGAATTCTCGTTTTATCTTTGGCAAGAATCGTGTTATGCAGATTGGCTTG
GGTCGCACGAAGAGCGAGGAAGTGGAGCCGGAATTGCACAAGCTATCCAA
GCGATTAACTGGCCAGGTGGGACTGCTTTTCACGGACAAATCCAAGGAGG
AAGTCCTGGAGTGGGCAGAAAACTACTGGGCCGTGGAATACGCACGCAGT
GGCTTTGTGGCCACGGAAACGGTTACCCTGCCAGCAGGTCCCCTAGAGGA
CTTCGCCCACTCTATGGAACCGCATCTGCGTTCCCTGGGCCTGCCCACCA
AATTGGAGAAGGGAATCGTTACGCTGTACAGTGACTACACGGTTTGTGAG
GAGGGCAAAGTTCTAACACCCGAACAGGCGAGAATCCTCAAGCTGGTGGG
CAAGCCCATGGCCAAATTTCGGCTGACCATGAAGTGCTCGTGGACAAAAA
GCGAAGGCTTCCAGCTGCATGTCGAGGATGATGTGAACGACGAGGAACAG
GCTGATAGCGCAATGGAAGAGGAGGCCGAGGCCGAGGCCATGGATGACAA
CGACGACGATGATGACGAAGAGGAGGATGATGAATAAAAGCTTTCTAGAC
C
BS06255.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1381-PA | 771 | CG1381-RA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:30:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpLP0-like-RA | 948 | CG1381-RA | 105..876 | 17..788 | 3860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:30:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10098590..10099087 | 788..291 | 2490 | 100 | Minus |
2R | 25286936 | 2R | 10099146..10099395 | 292..43 | 1250 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-02 11:30:40 has no hits.
BS06255.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:25 Download gff for
BS06255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1381-PA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:35 Download gff for
BS06255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1381-PA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:39:43 Download gff for
BS06255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpLP0-like-RA | 100..883 | 9..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:47:24 Download gff for
BS06255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpLP0-like-RA | 100..883 | 9..794 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:47:24 Download gff for
BS06255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10098583..10099085 | 293..794 | 99 | <- | Minus |
2R | 10099146..10099393 | 45..292 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:39:43 Download gff for
BS06255.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5986651..5986898 | 45..292 | 100 | <- | Minus |
arm_2R | 5986088..5986590 | 293..794 | 99 | <- | Minus |
BS06255.complete Sequence
803 bp (803 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635417
> BS06255.complete
GAAGTTATCAGTCGACATGCCGCGCTCCAAACGTGATAAGAAAGTTTCCC
TGACCAAAACCGACCGCAAGGGTCTGGCTTGGAAACAGCGCATTGTGGAC
GACATTCGGTTCTGCGTGGGCAAATACCCAAATATATTCGTTTTCCAAGT
TCAGAACATGAGGAATAGCTTGCTGAAGGATCTGCGACAGGAGTTGAAAA
AGAATTCTCGTTTTATCTTTGGCAAGAATCGTGTTATGCAGATTGGCTTG
GGTCGCACGAAGAGCGAGGAAGTGGAGCCGGAATTGCACAAGCTATCCAA
GCGATTAACTGGCCAGGTGGGACTGCTTTTCACGGACAAATCCAAGGAGG
AAGTCCTGGAGTGGGCAGAAAACTACTGGGCCGTGGAATACGCACGCAGT
GGCTTTGTGGCCACGGAAACGGTTACCCTGCCAGCAGGTCCCCTAGAGGA
CTTCGCCCACTCTATGGAACCGCATCTGCGTTCCCTGGGCCTGCCCACCA
AATTGGAGAAGGGAATCGTTACGCTGTACAGTGACTACACGGTTTGTGAG
GAGGGCAAAGTTCTAACACCCGAACAGGCGAGAATCCTCAAGCTGGTGGG
CAAGCCCATGGCCAAATTTCGGCTGACCATGAAGTGCTCGTGGACAAAAA
GCGAAGGCTTCCAGCTGCATGTCGAGGATGATGTGAACGACGAGGAACAG
GCTGATAGCGCAATGGAAGAGGAGGCCGAGGCCGAGGCCATGGATGACAA
CGACGACGATGATGACGAAGAGGAGGATGATGAATAAAAGCTTTCTAGAC
CAT
BS06255.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:41:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpLP0-like-RA | 771 | CG1381-PA | 1..771 | 17..787 | 3855 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:41:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpLP0-like-RA | 948 | CG1381-RA | 105..876 | 17..788 | 3860 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:41:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10098590..10099087 | 788..291 | 2490 | 100 | Minus |
2R | 25286936 | 2R | 10099146..10099395 | 292..43 | 1250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:41:37 has no hits.
BS06255.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:08 Download gff for
BS06255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1381-RA | 1..771 | 17..787 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:42 Download gff for
BS06255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1381-RA | 96..879 | 9..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:35 Download gff for
BS06255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpLP0-like-RA | 105..873 | 17..785 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:09 Download gff for
BS06255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1381-RA | 96..879 | 9..794 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:21 Download gff for
BS06255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RpLP0-like-RA | 105..873 | 17..785 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:21 Download gff for
BS06255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10098593..10099085 | 293..785 | 100 | <- | Minus |
2R | 10099146..10099393 | 45..292 | 100 | <- | Minus |
2R | 10099459..10099486 | 17..44 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:35 Download gff for
BS06255.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5986098..5986590 | 293..785 | 100 | <- | Minus |
arm_2R | 5986651..5986898 | 45..292 | 100 | <- | Minus |
arm_2R | 5986964..5986991 | 17..44 | 100 | | Minus |
BS06255.pep Sequence
Translation from 16 to 786
> BS06255.pep
MPRSKRDKKVSLTKTDRKGLAWKQRIVDDIRFCVGKYPNIFVFQVQNMRN
SLLKDLRQELKKNSRFIFGKNRVMQIGLGRTKSEEVEPELHKLSKRLTGQ
VGLLFTDKSKEEVLEWAENYWAVEYARSGFVATETVTLPAGPLEDFAHSM
EPHLRSLGLPTKLEKGIVTLYSDYTVCEEGKVLTPEQARILKLVGKPMAK
FRLTMKCSWTKSEGFQLHVEDDVNDEEQADSAMEEEAEAEAMDDNDDDDD
EEEDDE*
BS06255.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RpLP0-like-PA | 256 | CG1381-PA | 1..256 | 1..256 | 1331 | 100 | Plus |