Clone BS06255 Report

Search the DGRC for BS06255

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:55
Vector:pDNR-Dual
Associated Gene/TranscriptRpLP0-like-RA
Protein status:BS06255.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06255.3prime Sequence

801 bp (800 high quality bases) assembled on 2005-12-03

> BS06255.3prime
ATGGTCTAGAAAGCTTTTATTCATCATCCTCCTCTTCGTCATCATCGTCG
TCGTTGTCATCCATGGCCTCGGCCTCGGCCTCCTCTTCCATTGCGCTATC
AGCCTGTTCCTCGTCGTTCACATCATCCTCGACATGCAGCTGGAAGCCTT
CGCTTTTTGTCCACGAGCACTTCATGGTCAGCCGAAATTTGGCCATGGGC
TTGCCCACCAGCTTGAGGATTCTCGCCTGTTCGGGTGTTAGAACTTTGCC
CTCCTCACAAACCGTGTAGTCACTGTACAGCGTAACGATTCCCTTCTCCA
ATTTGGTGGGCAGGCCCAGGGAACGCAGATGCGGTTCCATAGAGTGGGCG
AAGTCCTCTAGGGGACCTGCTGGCAGGGTAACCGTTTCCGTGGCCACAAA
GCCACTGCGTGCGTATTCCACGGCCCAGTAGTTTTCTGCCCACTCCAGGA
CTTCCTCCTTGGATTTGTCCGTGAAAAGCAGTCCCACCTGGCCAGTTAAT
CGCTTGGATAGCTTGTGCAATTCCGGCTCCACTTCCTCGCTCTTCGTGCG
ACCCAAGCCAATCTGCATAACACGATTCTTGCCAAAGATAAAACGAGAAT
TCTTTTTCAACTCCTGTCGCAGATCCTTCAGCAAGCTATTCCTCATGTTC
TGAACTTGGAAAACGAATATATTTGGGTATTTGCCCACGCAGAACCGAAT
GTCGTCCACAATGCGCTGTTTCCAAGCCAGACCCTTGCGGTCGGTTTTGG
TCAGGGAAACTTTCTTATCACGTTTGGAGCGCGGCATGTCGACTGATAAC
T

BS06255.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG1381-PA 771 CG1381-RA 1..771 787..17 3855 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:05:08
Subject Length Description Subject Range Query Range Score Percent Strand
RpLP0-like-RA 948 CG1381-RA 105..876 787..16 3860 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:05:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10098590..10099087 16..513 2490 100 Plus
2R 25286936 2R 10099146..10099395 512..761 1250 100 Plus
Blast to na_te.dros performed on 2015-02-12 01:05:06 has no hits.

BS06255.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:24 Download gff for BS06255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1381-PA 1..771 17..787 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:33 Download gff for BS06255.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1381-PA 1..771 17..787 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 13:50:24 Download gff for BS06255.3prime
Subject Subject Range Query Range Percent Splice Strand
RpLP0-like-RA 100..883 10..795 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:56:17 Download gff for BS06255.3prime
Subject Subject Range Query Range Percent Splice Strand
RpLP0-like-RA 100..883 10..795 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:56:17 Download gff for BS06255.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10098583..10099085 10..511 99 <- Plus
2R 10099146..10099393 512..759 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 13:50:24 Download gff for BS06255.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5986088..5986590 10..511 99 <- Plus
arm_2R 5986651..5986898 512..759 100 <- Plus

BS06255.5prime Sequence

801 bp (784 high quality bases) assembled on 2005-12-03

> BS06255.5prime
GAAGTTATCAGTCGACATGCCGCGCTCCAAACGTGATAAGAAAGTTTCCC
TGACCAAAACCGACCGCAAGGGTCTGGCTTGGAAACAGCGCATTGTGGAC
GACATTCGGTTCTGCGTGGGCAAATACCCAAATATATTCGTTTTCCAAGT
TCAGAACATGAGGAATAGCTTGCTGAAGGATCTGCGACAGGAGTTGAAAA
AGAATTCTCGTTTTATCTTTGGCAAGAATCGTGTTATGCAGATTGGCTTG
GGTCGCACGAAGAGCGAGGAAGTGGAGCCGGAATTGCACAAGCTATCCAA
GCGATTAACTGGCCAGGTGGGACTGCTTTTCACGGACAAATCCAAGGAGG
AAGTCCTGGAGTGGGCAGAAAACTACTGGGCCGTGGAATACGCACGCAGT
GGCTTTGTGGCCACGGAAACGGTTACCCTGCCAGCAGGTCCCCTAGAGGA
CTTCGCCCACTCTATGGAACCGCATCTGCGTTCCCTGGGCCTGCCCACCA
AATTGGAGAAGGGAATCGTTACGCTGTACAGTGACTACACGGTTTGTGAG
GAGGGCAAAGTTCTAACACCCGAACAGGCGAGAATCCTCAAGCTGGTGGG
CAAGCCCATGGCCAAATTTCGGCTGACCATGAAGTGCTCGTGGACAAAAA
GCGAAGGCTTCCAGCTGCATGTCGAGGATGATGTGAACGACGAGGAACAG
GCTGATAGCGCAATGGAAGAGGAGGCCGAGGCCGAGGCCATGGATGACAA
CGACGACGATGATGACGAAGAGGAGGATGATGAATAAAAGCTTTCTAGAC
C

BS06255.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG1381-PA 771 CG1381-RA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:30:44
Subject Length Description Subject Range Query Range Score Percent Strand
RpLP0-like-RA 948 CG1381-RA 105..876 17..788 3860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:30:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10098590..10099087 788..291 2490 100 Minus
2R 25286936 2R 10099146..10099395 292..43 1250 100 Minus
Blast to na_te.dros performed on 2015-02-02 11:30:40 has no hits.

BS06255.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:25 Download gff for BS06255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1381-PA 1..771 17..787 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:35 Download gff for BS06255.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1381-PA 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:39:43 Download gff for BS06255.5prime
Subject Subject Range Query Range Percent Splice Strand
RpLP0-like-RA 100..883 9..794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:47:24 Download gff for BS06255.5prime
Subject Subject Range Query Range Percent Splice Strand
RpLP0-like-RA 100..883 9..794 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:47:24 Download gff for BS06255.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10098583..10099085 293..794 99 <- Minus
2R 10099146..10099393 45..292 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:39:43 Download gff for BS06255.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5986651..5986898 45..292 100 <- Minus
arm_2R 5986088..5986590 293..794 99 <- Minus

BS06255.complete Sequence

803 bp (803 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635417

> BS06255.complete
GAAGTTATCAGTCGACATGCCGCGCTCCAAACGTGATAAGAAAGTTTCCC
TGACCAAAACCGACCGCAAGGGTCTGGCTTGGAAACAGCGCATTGTGGAC
GACATTCGGTTCTGCGTGGGCAAATACCCAAATATATTCGTTTTCCAAGT
TCAGAACATGAGGAATAGCTTGCTGAAGGATCTGCGACAGGAGTTGAAAA
AGAATTCTCGTTTTATCTTTGGCAAGAATCGTGTTATGCAGATTGGCTTG
GGTCGCACGAAGAGCGAGGAAGTGGAGCCGGAATTGCACAAGCTATCCAA
GCGATTAACTGGCCAGGTGGGACTGCTTTTCACGGACAAATCCAAGGAGG
AAGTCCTGGAGTGGGCAGAAAACTACTGGGCCGTGGAATACGCACGCAGT
GGCTTTGTGGCCACGGAAACGGTTACCCTGCCAGCAGGTCCCCTAGAGGA
CTTCGCCCACTCTATGGAACCGCATCTGCGTTCCCTGGGCCTGCCCACCA
AATTGGAGAAGGGAATCGTTACGCTGTACAGTGACTACACGGTTTGTGAG
GAGGGCAAAGTTCTAACACCCGAACAGGCGAGAATCCTCAAGCTGGTGGG
CAAGCCCATGGCCAAATTTCGGCTGACCATGAAGTGCTCGTGGACAAAAA
GCGAAGGCTTCCAGCTGCATGTCGAGGATGATGTGAACGACGAGGAACAG
GCTGATAGCGCAATGGAAGAGGAGGCCGAGGCCGAGGCCATGGATGACAA
CGACGACGATGATGACGAAGAGGAGGATGATGAATAAAAGCTTTCTAGAC
CAT

BS06255.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:41:38
Subject Length Description Subject Range Query Range Score Percent Strand
RpLP0-like-RA 771 CG1381-PA 1..771 17..787 3855 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:41:40
Subject Length Description Subject Range Query Range Score Percent Strand
RpLP0-like-RA 948 CG1381-RA 105..876 17..788 3860 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:41:36
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10098590..10099087 788..291 2490 100 Minus
2R 25286936 2R 10099146..10099395 292..43 1250 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:41:37 has no hits.

BS06255.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:08 Download gff for BS06255.complete
Subject Subject Range Query Range Percent Splice Strand
CG1381-RA 1..771 17..787 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:42 Download gff for BS06255.complete
Subject Subject Range Query Range Percent Splice Strand
CG1381-RA 96..879 9..794 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:20:35 Download gff for BS06255.complete
Subject Subject Range Query Range Percent Splice Strand
RpLP0-like-RA 105..873 17..785 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:09 Download gff for BS06255.complete
Subject Subject Range Query Range Percent Splice Strand
CG1381-RA 96..879 9..794 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:15:21 Download gff for BS06255.complete
Subject Subject Range Query Range Percent Splice Strand
RpLP0-like-RA 105..873 17..785 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:21 Download gff for BS06255.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10098593..10099085 293..785 100 <- Minus
2R 10099146..10099393 45..292 100 <- Minus
2R 10099459..10099486 17..44 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:20:35 Download gff for BS06255.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5986098..5986590 293..785 100 <- Minus
arm_2R 5986651..5986898 45..292 100 <- Minus
arm_2R 5986964..5986991 17..44 100   Minus

BS06255.pep Sequence

Translation from 16 to 786

> BS06255.pep
MPRSKRDKKVSLTKTDRKGLAWKQRIVDDIRFCVGKYPNIFVFQVQNMRN
SLLKDLRQELKKNSRFIFGKNRVMQIGLGRTKSEEVEPELHKLSKRLTGQ
VGLLFTDKSKEEVLEWAENYWAVEYARSGFVATETVTLPAGPLEDFAHSM
EPHLRSLGLPTKLEKGIVTLYSDYTVCEEGKVLTPEQARILKLVGKPMAK
FRLTMKCSWTKSEGFQLHVEDDVNDEEQADSAMEEEAEAEAMDDNDDDDD
EEEDDE*

BS06255.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:18
Subject Length Description Subject Range Query Range Score Percent Strand
RpLP0-like-PA 256 CG1381-PA 1..256 1..256 1331 100 Plus