Clone Sequence Records
BS06256.3prime Sequence
798 bp (797 high quality bases) assembled on 2005-12-03
> BS06256.3prime
ATGGTCTAGAAAGCTTCTATCCGTCCAACGGCGTGCCCAGATAGACCATC
GAGACCTCGGTATTGCCGTAGACAGCGGATACTGTGGGATAGAGCTTTTT
GTCCGGCAGGCCCCGGAAGGCCACACCGAGGAACTCGTAGTTCTTCTCGA
ACGACAAGGTGTTGTCCTCGCAGTCGAGAATGACGCGTATCCGCTCGCCC
ACTTGGTACTTGGGAGCATTGTTCAGCAGCGGGTAACTGCCCTGCATGTC
GCCGTTGTGCAGCAGGTGGTTCTCGACCAGATTCCAGCCCCAGCTCTGGT
CGTCGGAGCCGAGCAGAGCCACATAGCCGTGACACTGTAGAGCCGCCTCC
TTGGTAGATATGCCGATGACGGCCACAGTGCCCAGCGGTCCCTCCCATAT
CACCTCCCAGGTGTGACGACCGTGGCGGAATCCTATCTTGCCCCGGGCCG
CGTCTGTGCTCTGCGCCACGGGATTGCGATGCAGGGTGAATCCGTTCGGC
TTAATGTACACATTCCTCGAACAGTCGTTGGGGCTCCAGGCGTGAAAATA
GGCCCGCAGCTTCGTCTTGTACGTGGAGACGGAGGCCAGCAGGTCCGATT
TGAGGGACTCCTTGGGCAGCTTGTTCAGGCAGTGCCAGCGCCAGACGTCG
CTGTTCTCGTCGTTGAGGAAGTGGTACCAACTTTTGCACACCTGCGAGCA
ATGACTGAGGTCGTCCAGCTCCAGGTAGGAGAAGATTACCTCCAGCACAT
TGTAATTGCACAGCGCCGCCACCGGATCGACCATGTCGACTGATAACT
BS06256.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4643-PB | 768 | CG4643-RB | 1..768 | 784..17 | 3840 | 100 | Minus |
CG4643-PA | 768 | CG4643-RA | 1..768 | 784..17 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fsn-RA | 1287 | CG4643-RA | 177..944 | 784..17 | 3840 | 100 | Minus |
Fsn-RB | 1280 | CG4643-RB | 170..937 | 784..17 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:50:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13221439..13221805 | 111..477 | 1835 | 100 | Plus |
2R | 25286936 | 2R | 13221862..13222169 | 477..784 | 1540 | 100 | Plus |
2R | 25286936 | 2R | 13221282..13221377 | 17..112 | 480 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 21:51:00 has no hits.
BS06256.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:26 Download gff for
BS06256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4643-PA | 1..768 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:36 Download gff for
BS06256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4643-PA | 1..768 | 17..784 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:16:43 Download gff for
BS06256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fsn-RB | 164..946 | 5..792 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:57 Download gff for
BS06256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fsn-RB | 164..946 | 5..792 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:57 Download gff for
BS06256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13221440..13221804 | 112..476 | 100 | <- | Plus |
2R | 13221862..13222173 | 477..792 | 98 | | Plus |
2R | 13221273..13221376 | 5..111 | 95 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:16:43 Download gff for
BS06256.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9108778..9108881 | 5..111 | 95 | <- | Plus |
arm_2R | 9108945..9109309 | 112..476 | 100 | <- | Plus |
arm_2R | 9109367..9109678 | 477..792 | 98 | | Plus |
BS06256.5prime Sequence
798 bp (797 high quality bases) assembled on 2005-12-03
> BS06256.5prime
GAAGTTATCAGTCGACATGGTCGATCCGGTGGCGGCGCTGTGCAATTACA
ATGTGCTGGAGGTAATCTTCTCCTACCTGGAGCTGGACGACCTCAGTCAT
TGCTCGCAGGTGTGCAAAAGTTGGTACCACTTCCTCAACGACGAGAACAG
CGACGTCTGGCGCTGGCACTGCCTGAACAAGCTGCCCAAGGAGTCCCTCA
AATCGGACCTGCTGGCCTCCGTCTCCACGTACAAGACGAAGCTGCGGGCC
TATTTTCACGCCTGGAGCCCCAACGACTGTTCGAGGAATGTGTACATTAA
GCCGAACGGATTCACCCTGCATCGCAATCCCGTGGCGCAGAGCACAGACG
CGGCCCGGGGCAAGATAGGATTCCGCCACGGTCGTCACACCTGGGAGGTG
ATATGGGAGGGACCGCTGGGCACTGTGGCCGTCATCGGCATATCTACCAA
GGAGGCGGCTCTACAGTGTCACGGCTATGTGGCTCTGCTCGGCTCCGACG
ACCAGAGCTGGGGCTGGAATCTGGTCGAGAACCACCTGCTGCACAACGGC
GACATGCAGGGCAGTTACCCGCTGCTGAACAATGCTCCCAAGTACCAAGT
GGGCGAGCGGATACGCGTCATTCTCGACTGCGAGGACAACACCTTGTCGT
TCGAGAAGAACTACGAGTTCCTCGGTGTGGCCTTCCGGGGCCTGCCGGAC
AAAAAGCTCTATCCCACAGTATCCGCTGTCTACGGCAATACCGAGGTCTC
GATGGTCTATCTGGGCACGCCGTTGGACGGATAGAAGCTTTCTAGACC
BS06256.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4643-PB | 768 | CG4643-RB | 1..768 | 17..784 | 3840 | 100 | Plus |
CG4643-PA | 768 | CG4643-RA | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:43:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fsn-RA | 1287 | CG4643-RA | 177..944 | 17..784 | 3840 | 100 | Plus |
Fsn-RB | 1280 | CG4643-RB | 170..937 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:43:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13221439..13221805 | 690..324 | 1835 | 100 | Minus |
2R | 25286936 | 2R | 13221862..13222169 | 324..17 | 1540 | 100 | Minus |
2R | 25286936 | 2R | 13221282..13221377 | 784..689 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 02:43:33 has no hits.
BS06256.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:27 Download gff for
BS06256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4643-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:38 Download gff for
BS06256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4643-PA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:53:16 Download gff for
BS06256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fsn-RB | 164..946 | 9..796 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:38:46 Download gff for
BS06256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fsn-RB | 164..946 | 9..796 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:38:46 Download gff for
BS06256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13221273..13221376 | 690..796 | 95 | <- | Minus |
2R | 13221440..13221804 | 325..689 | 100 | <- | Minus |
2R | 13221862..13222173 | 9..324 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:53:16 Download gff for
BS06256.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9108778..9108881 | 690..796 | 95 | <- | Minus |
arm_2R | 9108945..9109309 | 325..689 | 100 | <- | Minus |
arm_2R | 9109367..9109678 | 9..324 | 98 | | Minus |
BS06256.complete Sequence
800 bp (800 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635418
> BS06256.complete
GAAGTTATCAGTCGACATGGTCGATCCGGTGGCGGCGCTGTGCAATTACA
ATGTGCTGGAGGTAATCTTCTCCTACCTGGAGCTGGACGACCTCAGTCAT
TGCTCGCAGGTGTGCAAAAGTTGGTACCACTTCCTCAACGACGAGAACAG
CGACGTCTGGCGCTGGCACTGCCTGAACAAGCTGCCCAAGGAGTCCCTCA
AATCGGACCTGCTGGCCTCCGTCTCCACGTACAAGACGAAGCTGCGGGCC
TATTTTCACGCCTGGAGCCCCAACGACTGTTCGAGGAATGTGTACATTAA
GCCGAACGGATTCACCCTGCATCGCAATCCCGTGGCGCAGAGCACAGACG
CGGCCCGGGGCAAGATAGGATTCCGCCACGGTCGTCACACCTGGGAGGTG
ATATGGGAGGGACCGCTGGGCACTGTGGCCGTCATCGGCATATCTACCAA
GGAGGCGGCTCTACAGTGTCACGGCTATGTGGCTCTGCTCGGCTCCGACG
ACCAGAGCTGGGGCTGGAATCTGGTCGAGAACCACCTGCTGCACAACGGC
GACATGCAGGGCAGTTACCCGCTGCTGAACAATGCTCCCAAGTACCAAGT
GGGCGAGCGGATACGCGTCATTCTCGACTGCGAGGACAACACCTTGTCGT
TCGAGAAGAACTACGAGTTCCTCGGTGTGGCCTTCCGGGGCCTGCCGGAC
AAAAAGCTCTATCCCACAGTATCCGCTGTCTACGGCAATACCGAGGTCTC
GATGGTCTATCTGGGCACGCCGTTGGACGGATAGAAGCTTTCTAGACCAT
BS06256.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:20:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fsn-RA | 768 | CG4643-PA | 1..768 | 17..784 | 3840 | 100 | Plus |
Fsn-RB | 768 | CG4643-PB | 1..768 | 17..784 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fsn-RA | 1287 | CG4643-RA | 177..944 | 17..784 | 3840 | 100 | Plus |
Fsn-RB | 1280 | CG4643-RB | 170..937 | 17..784 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13221439..13221805 | 690..324 | 1835 | 100 | Minus |
2R | 25286936 | 2R | 13221862..13222169 | 324..17 | 1540 | 100 | Minus |
2R | 25286936 | 2R | 13221282..13221377 | 784..689 | 480 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:20:12 has no hits.
BS06256.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:10 Download gff for
BS06256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4643-RA | 1..768 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:44 Download gff for
BS06256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4643-RA | 226..1008 | 9..796 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:35 Download gff for
BS06256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fsn-RB | 170..937 | 17..784 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:10 Download gff for
BS06256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4643-RA | 226..1008 | 9..796 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:34 Download gff for
BS06256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fsn-RB | 170..937 | 17..784 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:34 Download gff for
BS06256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13221862..13222169 | 17..324 | 100 | | Minus |
2R | 13221282..13221376 | 690..784 | 100 | <- | Minus |
2R | 13221440..13221804 | 325..689 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:35 Download gff for
BS06256.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9108787..9108881 | 690..784 | 100 | <- | Minus |
arm_2R | 9108945..9109309 | 325..689 | 100 | <- | Minus |
arm_2R | 9109367..9109674 | 17..324 | 100 | | Minus |
BS06256.pep Sequence
Translation from 16 to 783
> BS06256.pep
MVDPVAALCNYNVLEVIFSYLELDDLSHCSQVCKSWYHFLNDENSDVWRW
HCLNKLPKESLKSDLLASVSTYKTKLRAYFHAWSPNDCSRNVYIKPNGFT
LHRNPVAQSTDAARGKIGFRHGRHTWEVIWEGPLGTVAVIGISTKEAALQ
CHGYVALLGSDDQSWGWNLVENHLLHNGDMQGSYPLLNNAPKYQVGERIR
VILDCEDNTLSFEKNYEFLGVAFRGLPDKKLYPTVSAVYGNTEVSMVYLG
TPLDG*
BS06256.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fsn-PA | 255 | CG4643-PA | 1..255 | 1..255 | 1395 | 100 | Plus |
Fsn-PB | 255 | CG4643-PB | 1..255 | 1..255 | 1395 | 100 | Plus |
gus-PM | 279 | CG2944-PM | 56..230 | 81..250 | 394 | 45.7 | Plus |
gus-PL | 279 | CG2944-PL | 56..230 | 81..250 | 394 | 45.7 | Plus |
gus-PK | 279 | CG2944-PK | 56..230 | 81..250 | 394 | 45.7 | Plus |