Clone BS06256 Report

Search the DGRC for BS06256

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:56
Vector:pDNR-Dual
Associated Gene/TranscriptFsn-RA
Protein status:BS06256.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06256.3prime Sequence

798 bp (797 high quality bases) assembled on 2005-12-03

> BS06256.3prime
ATGGTCTAGAAAGCTTCTATCCGTCCAACGGCGTGCCCAGATAGACCATC
GAGACCTCGGTATTGCCGTAGACAGCGGATACTGTGGGATAGAGCTTTTT
GTCCGGCAGGCCCCGGAAGGCCACACCGAGGAACTCGTAGTTCTTCTCGA
ACGACAAGGTGTTGTCCTCGCAGTCGAGAATGACGCGTATCCGCTCGCCC
ACTTGGTACTTGGGAGCATTGTTCAGCAGCGGGTAACTGCCCTGCATGTC
GCCGTTGTGCAGCAGGTGGTTCTCGACCAGATTCCAGCCCCAGCTCTGGT
CGTCGGAGCCGAGCAGAGCCACATAGCCGTGACACTGTAGAGCCGCCTCC
TTGGTAGATATGCCGATGACGGCCACAGTGCCCAGCGGTCCCTCCCATAT
CACCTCCCAGGTGTGACGACCGTGGCGGAATCCTATCTTGCCCCGGGCCG
CGTCTGTGCTCTGCGCCACGGGATTGCGATGCAGGGTGAATCCGTTCGGC
TTAATGTACACATTCCTCGAACAGTCGTTGGGGCTCCAGGCGTGAAAATA
GGCCCGCAGCTTCGTCTTGTACGTGGAGACGGAGGCCAGCAGGTCCGATT
TGAGGGACTCCTTGGGCAGCTTGTTCAGGCAGTGCCAGCGCCAGACGTCG
CTGTTCTCGTCGTTGAGGAAGTGGTACCAACTTTTGCACACCTGCGAGCA
ATGACTGAGGTCGTCCAGCTCCAGGTAGGAGAAGATTACCTCCAGCACAT
TGTAATTGCACAGCGCCGCCACCGGATCGACCATGTCGACTGATAACT

BS06256.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4643-PB 768 CG4643-RB 1..768 784..17 3840 100 Minus
CG4643-PA 768 CG4643-RA 1..768 784..17 3840 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:51:04
Subject Length Description Subject Range Query Range Score Percent Strand
Fsn-RA 1287 CG4643-RA 177..944 784..17 3840 100 Minus
Fsn-RB 1280 CG4643-RB 170..937 784..17 3840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 21:50:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13221439..13221805 111..477 1835 100 Plus
2R 25286936 2R 13221862..13222169 477..784 1540 100 Plus
2R 25286936 2R 13221282..13221377 17..112 480 100 Plus
Blast to na_te.dros performed on 2015-02-10 21:51:00 has no hits.

BS06256.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:26 Download gff for BS06256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4643-PA 1..768 17..784 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:36 Download gff for BS06256.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4643-PA 1..768 17..784 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-21 08:16:43 Download gff for BS06256.3prime
Subject Subject Range Query Range Percent Splice Strand
Fsn-RB 164..946 5..792 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 23:47:57 Download gff for BS06256.3prime
Subject Subject Range Query Range Percent Splice Strand
Fsn-RB 164..946 5..792 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 23:47:57 Download gff for BS06256.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13221440..13221804 112..476 100 <- Plus
2R 13221862..13222173 477..792 98   Plus
2R 13221273..13221376 5..111 95 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-21 08:16:43 Download gff for BS06256.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9108778..9108881 5..111 95 <- Plus
arm_2R 9108945..9109309 112..476 100 <- Plus
arm_2R 9109367..9109678 477..792 98   Plus

BS06256.5prime Sequence

798 bp (797 high quality bases) assembled on 2005-12-03

> BS06256.5prime
GAAGTTATCAGTCGACATGGTCGATCCGGTGGCGGCGCTGTGCAATTACA
ATGTGCTGGAGGTAATCTTCTCCTACCTGGAGCTGGACGACCTCAGTCAT
TGCTCGCAGGTGTGCAAAAGTTGGTACCACTTCCTCAACGACGAGAACAG
CGACGTCTGGCGCTGGCACTGCCTGAACAAGCTGCCCAAGGAGTCCCTCA
AATCGGACCTGCTGGCCTCCGTCTCCACGTACAAGACGAAGCTGCGGGCC
TATTTTCACGCCTGGAGCCCCAACGACTGTTCGAGGAATGTGTACATTAA
GCCGAACGGATTCACCCTGCATCGCAATCCCGTGGCGCAGAGCACAGACG
CGGCCCGGGGCAAGATAGGATTCCGCCACGGTCGTCACACCTGGGAGGTG
ATATGGGAGGGACCGCTGGGCACTGTGGCCGTCATCGGCATATCTACCAA
GGAGGCGGCTCTACAGTGTCACGGCTATGTGGCTCTGCTCGGCTCCGACG
ACCAGAGCTGGGGCTGGAATCTGGTCGAGAACCACCTGCTGCACAACGGC
GACATGCAGGGCAGTTACCCGCTGCTGAACAATGCTCCCAAGTACCAAGT
GGGCGAGCGGATACGCGTCATTCTCGACTGCGAGGACAACACCTTGTCGT
TCGAGAAGAACTACGAGTTCCTCGGTGTGGCCTTCCGGGGCCTGCCGGAC
AAAAAGCTCTATCCCACAGTATCCGCTGTCTACGGCAATACCGAGGTCTC
GATGGTCTATCTGGGCACGCCGTTGGACGGATAGAAGCTTTCTAGACC

BS06256.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG4643-PB 768 CG4643-RB 1..768 17..784 3840 100 Plus
CG4643-PA 768 CG4643-RA 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 02:43:37
Subject Length Description Subject Range Query Range Score Percent Strand
Fsn-RA 1287 CG4643-RA 177..944 17..784 3840 100 Plus
Fsn-RB 1280 CG4643-RB 170..937 17..784 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 02:43:29
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13221439..13221805 690..324 1835 100 Minus
2R 25286936 2R 13221862..13222169 324..17 1540 100 Minus
2R 25286936 2R 13221282..13221377 784..689 480 100 Minus
Blast to na_te.dros performed on 2015-02-04 02:43:33 has no hits.

BS06256.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:27 Download gff for BS06256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4643-PA 1..768 17..784 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:38 Download gff for BS06256.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4643-PA 1..768 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 04:53:16 Download gff for BS06256.5prime
Subject Subject Range Query Range Percent Splice Strand
Fsn-RB 164..946 9..796 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 04:38:46 Download gff for BS06256.5prime
Subject Subject Range Query Range Percent Splice Strand
Fsn-RB 164..946 9..796 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 04:38:46 Download gff for BS06256.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13221273..13221376 690..796 95 <- Minus
2R 13221440..13221804 325..689 100 <- Minus
2R 13221862..13222173 9..324 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 04:53:16 Download gff for BS06256.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9108778..9108881 690..796 95 <- Minus
arm_2R 9108945..9109309 325..689 100 <- Minus
arm_2R 9109367..9109678 9..324 98   Minus

BS06256.complete Sequence

800 bp (800 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635418

> BS06256.complete
GAAGTTATCAGTCGACATGGTCGATCCGGTGGCGGCGCTGTGCAATTACA
ATGTGCTGGAGGTAATCTTCTCCTACCTGGAGCTGGACGACCTCAGTCAT
TGCTCGCAGGTGTGCAAAAGTTGGTACCACTTCCTCAACGACGAGAACAG
CGACGTCTGGCGCTGGCACTGCCTGAACAAGCTGCCCAAGGAGTCCCTCA
AATCGGACCTGCTGGCCTCCGTCTCCACGTACAAGACGAAGCTGCGGGCC
TATTTTCACGCCTGGAGCCCCAACGACTGTTCGAGGAATGTGTACATTAA
GCCGAACGGATTCACCCTGCATCGCAATCCCGTGGCGCAGAGCACAGACG
CGGCCCGGGGCAAGATAGGATTCCGCCACGGTCGTCACACCTGGGAGGTG
ATATGGGAGGGACCGCTGGGCACTGTGGCCGTCATCGGCATATCTACCAA
GGAGGCGGCTCTACAGTGTCACGGCTATGTGGCTCTGCTCGGCTCCGACG
ACCAGAGCTGGGGCTGGAATCTGGTCGAGAACCACCTGCTGCACAACGGC
GACATGCAGGGCAGTTACCCGCTGCTGAACAATGCTCCCAAGTACCAAGT
GGGCGAGCGGATACGCGTCATTCTCGACTGCGAGGACAACACCTTGTCGT
TCGAGAAGAACTACGAGTTCCTCGGTGTGGCCTTCCGGGGCCTGCCGGAC
AAAAAGCTCTATCCCACAGTATCCGCTGTCTACGGCAATACCGAGGTCTC
GATGGTCTATCTGGGCACGCCGTTGGACGGATAGAAGCTTTCTAGACCAT

BS06256.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
Fsn-RA 768 CG4643-PA 1..768 17..784 3840 100 Plus
Fsn-RB 768 CG4643-PB 1..768 17..784 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:20:15
Subject Length Description Subject Range Query Range Score Percent Strand
Fsn-RA 1287 CG4643-RA 177..944 17..784 3840 100 Plus
Fsn-RB 1280 CG4643-RB 170..937 17..784 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:20:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13221439..13221805 690..324 1835 100 Minus
2R 25286936 2R 13221862..13222169 324..17 1540 100 Minus
2R 25286936 2R 13221282..13221377 784..689 480 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:20:12 has no hits.

BS06256.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:10 Download gff for BS06256.complete
Subject Subject Range Query Range Percent Splice Strand
CG4643-RA 1..768 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:44 Download gff for BS06256.complete
Subject Subject Range Query Range Percent Splice Strand
CG4643-RA 226..1008 9..796 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:06:35 Download gff for BS06256.complete
Subject Subject Range Query Range Percent Splice Strand
Fsn-RB 170..937 17..784 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:10 Download gff for BS06256.complete
Subject Subject Range Query Range Percent Splice Strand
CG4643-RA 226..1008 9..796 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:19:34 Download gff for BS06256.complete
Subject Subject Range Query Range Percent Splice Strand
Fsn-RB 170..937 17..784 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:19:34 Download gff for BS06256.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13221862..13222169 17..324 100   Minus
2R 13221282..13221376 690..784 100 <- Minus
2R 13221440..13221804 325..689 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:06:35 Download gff for BS06256.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9108787..9108881 690..784 100 <- Minus
arm_2R 9108945..9109309 325..689 100 <- Minus
arm_2R 9109367..9109674 17..324 100   Minus

BS06256.pep Sequence

Translation from 16 to 783

> BS06256.pep
MVDPVAALCNYNVLEVIFSYLELDDLSHCSQVCKSWYHFLNDENSDVWRW
HCLNKLPKESLKSDLLASVSTYKTKLRAYFHAWSPNDCSRNVYIKPNGFT
LHRNPVAQSTDAARGKIGFRHGRHTWEVIWEGPLGTVAVIGISTKEAALQ
CHGYVALLGSDDQSWGWNLVENHLLHNGDMQGSYPLLNNAPKYQVGERIR
VILDCEDNTLSFEKNYEFLGVAFRGLPDKKLYPTVSAVYGNTEVSMVYLG
TPLDG*

BS06256.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:12
Subject Length Description Subject Range Query Range Score Percent Strand
Fsn-PA 255 CG4643-PA 1..255 1..255 1395 100 Plus
Fsn-PB 255 CG4643-PB 1..255 1..255 1395 100 Plus
gus-PM 279 CG2944-PM 56..230 81..250 394 45.7 Plus
gus-PL 279 CG2944-PL 56..230 81..250 394 45.7 Plus
gus-PK 279 CG2944-PK 56..230 81..250 394 45.7 Plus