Clone BS06257 Report

Search the DGRC for BS06257

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptCG10754-RA
Protein status:BS06257.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06257.3prime Sequence

825 bp (824 high quality bases) assembled on 2005-12-03

> BS06257.3prime
ATGGTCTAGAAAGCTTTTAGTTGTTTGAAAGCATGGGTGGCGGTGGATGA
ACGCCATTGAACATGGGATGCATAGCAGGACGTGGCGGTCCCGGCATGGG
GAATCCGCCTGGGGGGCCTAGTGCCCTATGTAGATTCGGCGGCGGTGGCG
GCAGGATCTTAGGTTCGAACTTGAAGGCGAACTGAAGGAAGAACTGCTTG
GTGTCACGGTTCCAGTGCGTCCAGAACTTGCCCTCACTCTTCTCCACTTC
GCGGGACGGCACCTTGAACCCTATGGTCTCGTACGGCTCGGCGGCAAAGA
GAAGGTACTGCCACTTGCGGTCTGGCGGCTCGATCTTTTGCTCGTAGGCG
GACATGAAGCGGTGACGCGGAACAATGGACTCCGTGATTTCCGGGTAGTC
CACCTGAAAGAGCAACGACTGCTGGCCGTTGCTGAGTTCACGCTGCTTGG
TCACCCGGTAGCCGGGTCGTCCAATCTTGACGAACTTCTTCGGTTCCACG
CGGGGCTTCTCGGGCGCCAGCAGCGAAGAGGGTGCCTCCTTTGCCTCCTT
GGCGGCTCTTCTTGCCAGATTATCCTGATGCTTCTTGCCCTGCGTGTGGG
CCAAATAGCTGCCCTCGTTGTTGTGCAGCGTCAGGCAGAGTTTGCACTCG
TAGGAGCCCAGATGGTTCTTCATGAAGTACGGATCCTTGTTCAGATCGAT
TGTCTCCAGGGCCAGTTGACGCAGTCGCTCCTTGCGGTCGCGGTTCGTCT
CCGACCAGGAGGCTACGCCTCCGCTGCCGGTCTTGCCGCCGGCGCGGTTT
TGGAAGTCCATGTCGACTGATAACT

BS06257.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10754-PA 795 CG10754-RA 1..795 811..17 3975 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:19:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10754-RA 992 CG10754-RA 113..907 811..17 3975 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:19:11
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12813113..12813907 17..811 3975 100 Plus
Blast to na_te.dros performed on 2015-02-11 17:19:16 has no hits.

BS06257.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:29 Download gff for BS06257.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10754-PA 1..795 17..811 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:39 Download gff for BS06257.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10754-PA 1..795 17..811 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:49:54 Download gff for BS06257.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10754-RA 113..907 17..811 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:55 Download gff for BS06257.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10754-RA 113..907 17..811 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:55 Download gff for BS06257.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 12813113..12813907 17..811 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:49:54 Download gff for BS06257.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12806213..12807007 17..811 100   Plus

BS06257.5prime Sequence

825 bp (824 high quality bases) assembled on 2005-12-03

> BS06257.5prime
GAAGTTATCAGTCGACATGGACTTCCAAAACCGCGCCGGCGGCAAGACCG
GCAGCGGAGGCGTAGCCTCCTGGTCGGAGACGAACCGCGACCGCAAGGAG
CGACTGCGTCAACTGGCCCTGGAGACAATCGATCTGAACAAGGATCCGTA
CTTCATGAAGAACCATCTGGGCTCCTACGAGTGCAAACTCTGCCTGACGC
TGCACAACAACGAGGGCAGCTATTTGGCCCACACGCAGGGCAAGAAGCAT
CAGGATAATCTGGCAAGAAGAGCCGCCAAGGAGGCAAAGGAGGCACCCTC
TTCGCTGCTGGCGCCCGAGAAGCCCCGCGTGGAACCGAAGAAGTTCGTCA
AGATTGGACGACCCGGCTACCGGGTGACCAAGCAGCGTGAACTCAGCAAC
GGCCAGCAGTCGTTGCTCTTTCAGGTGGACTACCCGGAAATCACGGAGTC
CATTGTTCCGCGTCACCGCTTCATGTCCGCCTACGAGCAAAAGATCGAGC
CGCCAGACCGCAAGTGGCAGTACCTTCTCTTTGCCGCCGAGCCGTACGAG
ACCATAGGGTTCAAGGTGCCGTCCCGCGAAGTGGAGAAGAGTGAGGGCAA
GTTCTGGACGCACTGGAACCGTGACACCAAGCAGTTCTTCCTTCAGTTCG
CCTTCAAGTTCGAACCTAAGATCCTGCCGCCACCGCCGCCGAATCTACAT
AGGGCACTAGGCCCCCCAGGCGGATTCCCCATGCCGGGACCGCCACGTCC
TGCTATGCATCCCATGTTCAATGGCGTTCATCCACCGCCACCCATGCTTT
CAAACAACTAAAAGCTTTCTAGACC

BS06257.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10754-PA 795 CG10754-RA 1..795 17..811 3975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 20:00:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG10754-RA 992 CG10754-RA 113..907 17..811 3975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 20:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12813113..12813907 811..17 3975 100 Minus
Blast to na_te.dros performed on 2015-02-12 20:00:35 has no hits.

BS06257.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:30 Download gff for BS06257.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10754-PA 1..795 17..811 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:40 Download gff for BS06257.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10754-PA 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 10:33:30 Download gff for BS06257.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10754-RA 113..907 17..811 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:29:03 Download gff for BS06257.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10754-RA 113..907 17..811 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 01:29:03 Download gff for BS06257.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 12813113..12813907 17..811 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 10:33:30 Download gff for BS06257.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12806213..12807007 17..811 100   Minus

BS06257.complete Sequence

827 bp (827 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635419

> BS06257.complete
GAAGTTATCAGTCGACATGGACTTCCAAAACCGCGCCGGCGGCAAGACCG
GCAGCGGAGGCGTAGCCTCCTGGTCGGAGACGAACCGCGACCGCAAGGAG
CGACTGCGTCAACTGGCCCTGGAGACAATCGATCTGAACAAGGATCCGTA
CTTCATGAAGAACCATCTGGGCTCCTACGAGTGCAAACTCTGCCTGACGC
TGCACAACAACGAGGGCAGCTATTTGGCCCACACGCAGGGCAAGAAGCAT
CAGGATAATCTGGCAAGAAGAGCCGCCAAGGAGGCAAAGGAGGCACCCTC
TTCGCTGCTGGCGCCCGAGAAGCCCCGCGTGGAACCGAAGAAGTTCGTCA
AGATTGGACGACCCGGCTACCGGGTGACCAAGCAGCGTGAACTCAGCAAC
GGCCAGCAGTCGTTGCTCTTTCAGGTGGACTACCCGGAAATCACGGAGTC
CATTGTTCCGCGTCACCGCTTCATGTCCGCCTACGAGCAAAAGATCGAGC
CGCCAGACCGCAAGTGGCAGTACCTTCTCTTTGCCGCCGAGCCGTACGAG
ACCATAGGGTTCAAGGTGCCGTCCCGCGAAGTGGAGAAGAGTGAGGGCAA
GTTCTGGACGCACTGGAACCGTGACACCAAGCAGTTCTTCCTTCAGTTCG
CCTTCAAGTTCGAACCTAAGATCCTGCCGCCACCGCCGCCGAATCTACAT
AGGGCACTAGGCCCCCCAGGCGGATTCCCCATGCCGGGACCGCCACGTCC
TGCTATGCATCCCATGTTCAATGGCGTTCATCCACCGCCACCCATGCTTT
CAAACAACTAAAAGCTTTCTAGACCAT

BS06257.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG10754-RA 795 CG10754-PA 1..795 17..811 3975 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG10754-RA 992 CG10754-RA 113..907 17..811 3975 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12813113..12813907 811..17 3975 100 Minus
Blast to na_te.dros performed on 2014-11-28 00:15:57 has no hits.

BS06257.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:17:11 Download gff for BS06257.complete
Subject Subject Range Query Range Percent Splice Strand
CG10754-RA 1..795 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:46 Download gff for BS06257.complete
Subject Subject Range Query Range Percent Splice Strand
CG10754-RA 97..891 17..811 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:21:09 Download gff for BS06257.complete
Subject Subject Range Query Range Percent Splice Strand
CG10754-RA 113..905 17..809 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:17:11 Download gff for BS06257.complete
Subject Subject Range Query Range Percent Splice Strand
CG10754-RA 97..891 17..811 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:28:51 Download gff for BS06257.complete
Subject Subject Range Query Range Percent Splice Strand
CG10754-RA 113..905 17..809 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:28:51 Download gff for BS06257.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12813115..12813907 17..809 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:21:09 Download gff for BS06257.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12806215..12807007 17..809 100   Minus

BS06257.pep Sequence

Translation from 16 to 810

> BS06257.pep
MDFQNRAGGKTGSGGVASWSETNRDRKERLRQLALETIDLNKDPYFMKNH
LGSYECKLCLTLHNNEGSYLAHTQGKKHQDNLARRAAKEAKEAPSSLLAP
EKPRVEPKKFVKIGRPGYRVTKQRELSNGQQSLLFQVDYPEITESIVPRH
RFMSAYEQKIEPPDRKWQYLLFAAEPYETIGFKVPSREVEKSEGKFWTHW
NRDTKQFFLQFAFKFEPKILPPPPPNLHRALGPPGGFPMPGPPRPAMHPM
FNGVHPPPPMLSNN*

BS06257.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:04:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG10754-PA 264 CG10754-PA 1..264 1..264 1441 100 Plus