Clone BS06262 Report

Search the DGRC for BS06262

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG1236-RA
Protein status:BS06262.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06262.3prime Sequence

952 bp (834 high quality bases) assembled on 2005-12-03

> BS06262.3prime
ATGGTCTAGAAAGCTTTTACAGCTCTACTTCGGCTACCATTTTATCGCCA
GCTAAGGCAGCAAGAATATTTCTGGCTGTAATCCGGGACATTTCCTTGCG
CGTTTCGATGTCAGCGCTGCCAATGTGGGGGAGAATAACCACATTATCCA
GTTTCAGAAGAGGATCGTCGATTGGCAATGGCTCCGGCGTCGTTACATCC
AGACCAGCTGCTAGAATTCGTTTGGTTTTCAGTGCCTCGTACAGGGCCTT
CTGGTCTACAACGCCACCACGCGCCGTGTTGATAAGAATGCAGTTGGGCT
TCATCTTCTGAAAGGCAGTGGCATTGAAGATTTCCTTAGTCTCCGGGGTT
AGGGCGCAACAGACTACGATTAAGTCCGACTCGCGAAGCATCTCGTCAAA
GTCCACGTGCCGGGCATTCACAGCAGCCGCCTCCTTGGGGCGCAGTGATC
GTGTTGTGTATGTTATCTCCGTCGGCTTAAATGGCACAATGCGTGCCGCT
ATCTCTTGGCCGATGCGGCCGAAGCCCAGCAGGCCGACCCGGGAGCCCTT
CAGTCCCTGGCCGCACATCCACATGGGGGCCCACGACTTCCAGCCGCCGT
TGTAAACCTGCTTGTTGGCCTCGAATAGTCGGCGGTTGGTGGCCAGAAGC
AGGGCAAGCGTTAATTCTGCCGTGGCATCCGTTAGGACGTCCGGTGTGAA
GCCCACTCGAATTCCACGTTTCCTGCACTCCTCCACGTCGATGTGATCGT
AACCCACCGAAATAGTTGCCACGCACTTCAACTGAGGACCGGCAGCATCC
AAGACTTCCTTGTCAACCTTGTCCGTTAGAGCGCAGTAAAGGGCATCTTT
TCCGGCCACGACGCGGATAAGCTCGGAGCGGGGCACCGGATTGGTCTCAT
GCCAGGTACTCACTTGGCAGCTCTTGCGCAGCAGCTCCAGACCGCTGTCA
TC

BS06262.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1236-PA 1044 CG1236-RA 109..1044 952..17 4680 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:19:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG1236-RA 1190 CG1236-RA 150..1085 952..17 4680 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5737003..5737908 922..17 4530 100 Minus
Blast to na_te.dros performed on 2015-02-11 17:19:02 has no hits.

BS06262.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:36 Download gff for BS06262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-PA 109..1044 17..952 100   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:48 Download gff for BS06262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-PA 109..1044 17..952 100   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:49:52 Download gff for BS06262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 150..1087 13..952 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:51 Download gff for BS06262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 150..1087 13..952 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:51 Download gff for BS06262.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5736897..5736928 921..952 100 -> Minus
3R 5737005..5737910 13..920 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:49:52 Download gff for BS06262.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1562619..1562650 921..952 100 -> Minus
arm_3R 1562727..1563632 13..920 99   Minus

BS06262.5prime Sequence

891 bp (818 high quality bases) assembled on 2005-12-03

> BS06262.5prime
GAAGTTATCAGTCGACATGCCACCGCGGTTGCCGTTCGGACAAGTCAGAA
ACTTATTGATTCAGGGACACATAATTCGAAGGATGAGCTCCCAACACAAG
GTGTACGTAACCAGGCCGGATGTGGATGACAGCGGTCTGGAGCTGCTGCG
CAAGAGCTGCCAAGTGAGTACCTGGCATGAGACCAATCCGGTGCCCCGCT
CCGAGCTTATCCGCGTCGTGGCCGGAAAAGATGCCCTTTACTGCGCTCTA
ACGGACAAGGTTGACAAGGAAGTCTTGGATGCTGCCGGTCCTCAGTTGAA
GTGCGTGGCAACTATTTCGGTGGGTTACGATCACATCGACGTGGAGGAGT
GCAGGAAACGTGGAATTCGAGTGGGCTTCACACCGGACGTCCTAACGGAT
GCCACGGCAGAATTAACGCTTGCCCTGCTTCTGGCCACCAACCGCCGACT
ATTCGAGGCCAACAAGCAGGTTTACAACGGCGGCTGGAAGTCGTGGGCCC
CCATGTGGATGTGCGGCCAGGGACTGAAGGGCTCCCGGGTCGGCCTGCTG
GGCTTCGGCCGCATCGGCCAAGAGATAGCGGCACGCATTGTGCCATTTAA
GCCGACGGAGATAACATACACAACACGATCACTGCGCCCCAAGGAGGCGG
CTGCTGTGAATGCCCGGCACGTGGACTTTGACGAGATGCTTCGCGAGTCG
GACTTAATCGTAGTCTGTTGCGCCCTAACCCCGGAGACTAAGGAAATCTT
CAATGCCACTGCCTTTCAGAAGATGAAGCCCAACTGCATTCTTATCAACA
CGGCGCGTGGTGGCGTTGTAGACCAGAAGGCCCTGTACGAGGCACTGAAA
ACCAAACGAATTCTAGCAGCTGGTCTGGATGTAACGACGCC

BS06262.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG1236-PA 1044 CG1236-RA 1..875 17..891 4375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG1236-RA 1190 CG1236-RA 42..916 17..891 4375 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:27
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5737003..5737739 155..891 3685 100 Plus
3R 32079331 3R 5736789..5736928 17..156 700 100 Plus
Blast to na_te.dros performed on 2015-02-12 00:58:29 has no hits.

BS06262.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:37 Download gff for BS06262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-PA 1..875 17..891 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:50 Download gff for BS06262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-PA 1..875 17..891 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:53:28 Download gff for BS06262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 39..916 12..891 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:41:03 Download gff for BS06262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 39..916 12..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:41:03 Download gff for BS06262.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5736786..5736928 12..156 98 -> Plus
3R 5737005..5737739 157..891 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:53:28 Download gff for BS06262.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1562508..1562650 12..156 98 -> Plus
arm_3R 1562727..1563461 157..891 100   Plus

BS06262.complete Sequence

1076 bp (1076 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ635420

> BS06262.complete
GAAGTTATCAGTCGACATGCCACCGCGGTTGCCGTTCGGACAAGTCAGAA
ACTTATTGATTCAGGGACACATAATTCGAAGGATGAGCTCCCAACACAAG
GTGTACGTAACCAGGCCGGATGTGGATGACAGCGGTCTGGAGCTGCTGCG
CAAGAGCTGCCAAGTGAGTACCTGGCATGAGACCAATCCGGTGCCCCGCT
CCGAGCTTATCCGCGTCGTGGCCGGAAAAGATGCCCTTTACTGCGCTCTA
ACGGACAAGGTTGACAAGGAAGTCTTGGATGCTGCCGGTCCTCAGTTGAA
GTGCGTGGCAACTATTTCGGTGGGTTACGATCACATCGACGTGGAGGAGT
GCAGGAAACGTGGAATTCGAGTGGGCTTCACACCGGACGTCCTAACGGAT
GCCACGGCAGAATTAACGCTTGCCCTGCTTCTGGCCACCAACCGCCGACT
ATTCGAGGCCAACAAGCAGGTTTACAACGGCGGCTGGAAGTCGTGGGCCC
CCATGTGGATGTGCGGCCAGGGACTGAAGGGCTCCCGGGTCGGCCTGCTG
GGCTTCGGCCGCATCGGCCAAGAGATAGCGGCACGCATTGTGCCATTTAA
GCCGACGGAGATAACATACACAACACGATCACTGCGCCCCAAGGAGGCGG
CTGCTGTGAATGCCCGGCACGTGGACTTTGACGAGATGCTTCGCGAGTCG
GACTTAATCGTAGTCTGTTGCGCCCTAACCCCGGAGACTAAGGAAATCTT
CAATGCCACTGCCTTTCAGAAGATGAAGCCCAACTGCATTCTTATCAACA
CGGCGCGTGGTGGCGTTGTAGACCAGAAGGCCCTGTACGAGGCACTGAAA
ACCAAACGAATTCTAGCAGCTGGTCTGGATGTAACGACGCCGGAGCCATT
GCCAATCGACGATCCTCTTCTGAAACTGGATAATGTGGTTATTCTCCCCC
ACATTGGCAGCGCTGACATCGAAACGCGCAAGGAAATGTCCCGGATTACA
GCCAGAAATATTCTTGCTGCCTTAGCTGGCGATAAAATGGTAGCCGAAGT
AGAGCTGTAAAAGCTTTCTAGACCAT

BS06262.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1236-RA 1044 CG1236-PA 1..1044 17..1060 5220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG1236-RA 1190 CG1236-RA 42..1085 17..1060 5220 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5737003..5737908 155..1060 4530 100 Plus
3R 32079331 3R 5736789..5736928 17..156 700 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:45:35 has no hits.

BS06262.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:46 Download gff for BS06262.complete
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 1..1044 17..1060 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:18 Download gff for BS06262.complete
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 43..1091 12..1064 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:42 Download gff for BS06262.complete
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 42..1083 17..1058 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:46 Download gff for BS06262.complete
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 43..1091 12..1064 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:40 Download gff for BS06262.complete
Subject Subject Range Query Range Percent Splice Strand
CG1236-RA 42..1083 17..1058 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:40 Download gff for BS06262.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5736789..5736928 17..156 100 -> Plus
3R 5737005..5737906 157..1058 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:42 Download gff for BS06262.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1562511..1562650 17..156 100 -> Plus
arm_3R 1562727..1563628 157..1058 100   Plus

BS06262.pep Sequence

Translation from 16 to 1059

> BS06262.pep
MPPRLPFGQVRNLLIQGHIIRRMSSQHKVYVTRPDVDDSGLELLRKSCQV
STWHETNPVPRSELIRVVAGKDALYCALTDKVDKEVLDAAGPQLKCVATI
SVGYDHIDVEECRKRGIRVGFTPDVLTDATAELTLALLLATNRRLFEANK
QVYNGGWKSWAPMWMCGQGLKGSRVGLLGFGRIGQEIAARIVPFKPTEIT
YTTRSLRPKEAAAVNARHVDFDEMLRESDLIVVCCALTPETKEIFNATAF
QKMKPNCILINTARGGVVDQKALYEALKTKRILAAGLDVTTPEPLPIDDP
LLKLDNVVILPHIGSADIETRKEMSRITARNILAALAGDKMVAEVEL*

BS06262.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG1236-PA 347 CG1236-PA 1..347 1..347 1787 100 Plus
CG9331-PK 326 CG9331-PK 8..323 28..343 728 47 Plus
CG9331-PJ 326 CG9331-PJ 8..323 28..343 728 47 Plus
CG9331-PG 326 CG9331-PG 8..323 28..343 728 47 Plus
CG9331-PF 326 CG9331-PF 8..323 28..343 728 47 Plus