Clone Sequence Records
BS06262.3prime Sequence
952 bp (834 high quality bases) assembled on 2005-12-03
> BS06262.3prime
ATGGTCTAGAAAGCTTTTACAGCTCTACTTCGGCTACCATTTTATCGCCA
GCTAAGGCAGCAAGAATATTTCTGGCTGTAATCCGGGACATTTCCTTGCG
CGTTTCGATGTCAGCGCTGCCAATGTGGGGGAGAATAACCACATTATCCA
GTTTCAGAAGAGGATCGTCGATTGGCAATGGCTCCGGCGTCGTTACATCC
AGACCAGCTGCTAGAATTCGTTTGGTTTTCAGTGCCTCGTACAGGGCCTT
CTGGTCTACAACGCCACCACGCGCCGTGTTGATAAGAATGCAGTTGGGCT
TCATCTTCTGAAAGGCAGTGGCATTGAAGATTTCCTTAGTCTCCGGGGTT
AGGGCGCAACAGACTACGATTAAGTCCGACTCGCGAAGCATCTCGTCAAA
GTCCACGTGCCGGGCATTCACAGCAGCCGCCTCCTTGGGGCGCAGTGATC
GTGTTGTGTATGTTATCTCCGTCGGCTTAAATGGCACAATGCGTGCCGCT
ATCTCTTGGCCGATGCGGCCGAAGCCCAGCAGGCCGACCCGGGAGCCCTT
CAGTCCCTGGCCGCACATCCACATGGGGGCCCACGACTTCCAGCCGCCGT
TGTAAACCTGCTTGTTGGCCTCGAATAGTCGGCGGTTGGTGGCCAGAAGC
AGGGCAAGCGTTAATTCTGCCGTGGCATCCGTTAGGACGTCCGGTGTGAA
GCCCACTCGAATTCCACGTTTCCTGCACTCCTCCACGTCGATGTGATCGT
AACCCACCGAAATAGTTGCCACGCACTTCAACTGAGGACCGGCAGCATCC
AAGACTTCCTTGTCAACCTTGTCCGTTAGAGCGCAGTAAAGGGCATCTTT
TCCGGCCACGACGCGGATAAGCTCGGAGCGGGGCACCGGATTGGTCTCAT
GCCAGGTACTCACTTGGCAGCTCTTGCGCAGCAGCTCCAGACCGCTGTCA
TC
BS06262.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1236-PA | 1044 | CG1236-RA | 109..1044 | 952..17 | 4680 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 17:19:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1236-RA | 1190 | CG1236-RA | 150..1085 | 952..17 | 4680 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 17:18:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5737003..5737908 | 922..17 | 4530 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 17:19:02 has no hits.
BS06262.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:36 Download gff for
BS06262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-PA | 109..1044 | 17..952 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:48 Download gff for
BS06262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-PA | 109..1044 | 17..952 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-26 12:49:52 Download gff for
BS06262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-RA | 150..1087 | 13..952 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 19:24:51 Download gff for
BS06262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-RA | 150..1087 | 13..952 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 19:24:51 Download gff for
BS06262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5736897..5736928 | 921..952 | 100 | -> | Minus |
3R | 5737005..5737910 | 13..920 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-26 12:49:52 Download gff for
BS06262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1562619..1562650 | 921..952 | 100 | -> | Minus |
arm_3R | 1562727..1563632 | 13..920 | 99 | | Minus |
BS06262.5prime Sequence
891 bp (818 high quality bases) assembled on 2005-12-03
> BS06262.5prime
GAAGTTATCAGTCGACATGCCACCGCGGTTGCCGTTCGGACAAGTCAGAA
ACTTATTGATTCAGGGACACATAATTCGAAGGATGAGCTCCCAACACAAG
GTGTACGTAACCAGGCCGGATGTGGATGACAGCGGTCTGGAGCTGCTGCG
CAAGAGCTGCCAAGTGAGTACCTGGCATGAGACCAATCCGGTGCCCCGCT
CCGAGCTTATCCGCGTCGTGGCCGGAAAAGATGCCCTTTACTGCGCTCTA
ACGGACAAGGTTGACAAGGAAGTCTTGGATGCTGCCGGTCCTCAGTTGAA
GTGCGTGGCAACTATTTCGGTGGGTTACGATCACATCGACGTGGAGGAGT
GCAGGAAACGTGGAATTCGAGTGGGCTTCACACCGGACGTCCTAACGGAT
GCCACGGCAGAATTAACGCTTGCCCTGCTTCTGGCCACCAACCGCCGACT
ATTCGAGGCCAACAAGCAGGTTTACAACGGCGGCTGGAAGTCGTGGGCCC
CCATGTGGATGTGCGGCCAGGGACTGAAGGGCTCCCGGGTCGGCCTGCTG
GGCTTCGGCCGCATCGGCCAAGAGATAGCGGCACGCATTGTGCCATTTAA
GCCGACGGAGATAACATACACAACACGATCACTGCGCCCCAAGGAGGCGG
CTGCTGTGAATGCCCGGCACGTGGACTTTGACGAGATGCTTCGCGAGTCG
GACTTAATCGTAGTCTGTTGCGCCCTAACCCCGGAGACTAAGGAAATCTT
CAATGCCACTGCCTTTCAGAAGATGAAGCCCAACTGCATTCTTATCAACA
CGGCGCGTGGTGGCGTTGTAGACCAGAAGGCCCTGTACGAGGCACTGAAA
ACCAAACGAATTCTAGCAGCTGGTCTGGATGTAACGACGCC
BS06262.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1236-PA | 1044 | CG1236-RA | 1..875 | 17..891 | 4375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 00:58:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1236-RA | 1190 | CG1236-RA | 42..916 | 17..891 | 4375 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 00:58:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5737003..5737739 | 155..891 | 3685 | 100 | Plus |
3R | 32079331 | 3R | 5736789..5736928 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 00:58:29 has no hits.
BS06262.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:37 Download gff for
BS06262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-PA | 1..875 | 17..891 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:50 Download gff for
BS06262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-PA | 1..875 | 17..891 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 20:53:28 Download gff for
BS06262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-RA | 39..916 | 12..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 04:41:03 Download gff for
BS06262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-RA | 39..916 | 12..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 04:41:03 Download gff for
BS06262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5736786..5736928 | 12..156 | 98 | -> | Plus |
3R | 5737005..5737739 | 157..891 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 20:53:28 Download gff for
BS06262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1562508..1562650 | 12..156 | 98 | -> | Plus |
arm_3R | 1562727..1563461 | 157..891 | 100 | | Plus |
BS06262.complete Sequence
1076 bp (1076 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635420
> BS06262.complete
GAAGTTATCAGTCGACATGCCACCGCGGTTGCCGTTCGGACAAGTCAGAA
ACTTATTGATTCAGGGACACATAATTCGAAGGATGAGCTCCCAACACAAG
GTGTACGTAACCAGGCCGGATGTGGATGACAGCGGTCTGGAGCTGCTGCG
CAAGAGCTGCCAAGTGAGTACCTGGCATGAGACCAATCCGGTGCCCCGCT
CCGAGCTTATCCGCGTCGTGGCCGGAAAAGATGCCCTTTACTGCGCTCTA
ACGGACAAGGTTGACAAGGAAGTCTTGGATGCTGCCGGTCCTCAGTTGAA
GTGCGTGGCAACTATTTCGGTGGGTTACGATCACATCGACGTGGAGGAGT
GCAGGAAACGTGGAATTCGAGTGGGCTTCACACCGGACGTCCTAACGGAT
GCCACGGCAGAATTAACGCTTGCCCTGCTTCTGGCCACCAACCGCCGACT
ATTCGAGGCCAACAAGCAGGTTTACAACGGCGGCTGGAAGTCGTGGGCCC
CCATGTGGATGTGCGGCCAGGGACTGAAGGGCTCCCGGGTCGGCCTGCTG
GGCTTCGGCCGCATCGGCCAAGAGATAGCGGCACGCATTGTGCCATTTAA
GCCGACGGAGATAACATACACAACACGATCACTGCGCCCCAAGGAGGCGG
CTGCTGTGAATGCCCGGCACGTGGACTTTGACGAGATGCTTCGCGAGTCG
GACTTAATCGTAGTCTGTTGCGCCCTAACCCCGGAGACTAAGGAAATCTT
CAATGCCACTGCCTTTCAGAAGATGAAGCCCAACTGCATTCTTATCAACA
CGGCGCGTGGTGGCGTTGTAGACCAGAAGGCCCTGTACGAGGCACTGAAA
ACCAAACGAATTCTAGCAGCTGGTCTGGATGTAACGACGCCGGAGCCATT
GCCAATCGACGATCCTCTTCTGAAACTGGATAATGTGGTTATTCTCCCCC
ACATTGGCAGCGCTGACATCGAAACGCGCAAGGAAATGTCCCGGATTACA
GCCAGAAATATTCTTGCTGCCTTAGCTGGCGATAAAATGGTAGCCGAAGT
AGAGCTGTAAAAGCTTTCTAGACCAT
BS06262.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:45:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1236-RA | 1044 | CG1236-PA | 1..1044 | 17..1060 | 5220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:45:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1236-RA | 1190 | CG1236-RA | 42..1085 | 17..1060 | 5220 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:45:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5737003..5737908 | 155..1060 | 4530 | 100 | Plus |
3R | 32079331 | 3R | 5736789..5736928 | 17..156 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:45:35 has no hits.
BS06262.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:46 Download gff for
BS06262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-RA | 1..1044 | 17..1060 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:18 Download gff for
BS06262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-RA | 43..1091 | 12..1064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:13:42 Download gff for
BS06262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-RA | 42..1083 | 17..1058 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:46 Download gff for
BS06262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-RA | 43..1091 | 12..1064 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:27:40 Download gff for
BS06262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1236-RA | 42..1083 | 17..1058 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:27:40 Download gff for
BS06262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5736789..5736928 | 17..156 | 100 | -> | Plus |
3R | 5737005..5737906 | 157..1058 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:13:42 Download gff for
BS06262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1562511..1562650 | 17..156 | 100 | -> | Plus |
arm_3R | 1562727..1563628 | 157..1058 | 100 | | Plus |
BS06262.pep Sequence
Translation from 16 to 1059
> BS06262.pep
MPPRLPFGQVRNLLIQGHIIRRMSSQHKVYVTRPDVDDSGLELLRKSCQV
STWHETNPVPRSELIRVVAGKDALYCALTDKVDKEVLDAAGPQLKCVATI
SVGYDHIDVEECRKRGIRVGFTPDVLTDATAELTLALLLATNRRLFEANK
QVYNGGWKSWAPMWMCGQGLKGSRVGLLGFGRIGQEIAARIVPFKPTEIT
YTTRSLRPKEAAAVNARHVDFDEMLRESDLIVVCCALTPETKEIFNATAF
QKMKPNCILINTARGGVVDQKALYEALKTKRILAAGLDVTTPEPLPIDDP
LLKLDNVVILPHIGSADIETRKEMSRITARNILAALAGDKMVAEVEL*
BS06262.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1236-PA | 347 | CG1236-PA | 1..347 | 1..347 | 1787 | 100 | Plus |
CG9331-PK | 326 | CG9331-PK | 8..323 | 28..343 | 728 | 47 | Plus |
CG9331-PJ | 326 | CG9331-PJ | 8..323 | 28..343 | 728 | 47 | Plus |
CG9331-PG | 326 | CG9331-PG | 8..323 | 28..343 | 728 | 47 | Plus |
CG9331-PF | 326 | CG9331-PF | 8..323 | 28..343 | 728 | 47 | Plus |