Clone Sequence Records
BS06263.3prime Sequence
771 bp (770 high quality bases) assembled on 2005-12-03
> BS06263.3prime
ATGGTCTAGAAAGCTTTTATTTTTTTGCGAATTCAGGTGGACAATCTGGC
TGGGTACTGGGATGAGTGGCTTTGAAGACATCAAGTTCTTGTAGTTCCTG
ATTCAAGCGTACTATGGTGGGATATGGGGTCAGGTCAGCTTTGTATCTCC
TGGCATTGCGCACCTGAGGTACCAGGCAAATATCAGCCATGCTGAGCTCA
TCTCCCACACAGAATTTGCCCGCCGAATGGGAAAGAACCTTTTCGAGACC
CTGAAATCCTCGAGAAATCCAGTGTTGTGCCCATTGCAGACTCTGATCCT
TGCCTATATGATCTAGGACAGATACATTTTGCAGTGGCTGGATGCCCGAG
CAAATGAGCTCCACAATTTCACGGATCTTTGCTCTTTTAACCGGATCTTG
GGGCAGAAGTGCTGGCTGAGGTCGAGTTTCCTCCAGGTAGTGGATAATAG
CCACCGAGTCGCACAAGGTATGGCCATCAATCTTCAACGAGGGAACCTTT
TGCATCGGATTGACTTCCCTATATTCATCCGTATAGGCATGTCCGCTAAC
TGTTTTTAGCAAAGAAGTCGGCTTAATGTCATAATCAATCTTCTTTATTG
CCAGCGCAACGCGAACTCTCCAAGAACACGAACTAGGCCAATAGGAATAC
AGTATAGGCTTTGTTGCCAAATGTCGGAACAAGGGCTTAGACCAAGAAGA
TCTGTACAGTCCGGCCAAATGGATACCTCTGTGGGTCAATTGGGTAGCAG
AAGCCATGTCGACTGATAACT
BS06263.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9362-PA | 741 | CG9362-RA | 1..741 | 757..17 | 3705 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 19:14:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstZ1-RA | 913 | CG9362-RA | 102..842 | 757..17 | 3705 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 19:13:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9455781..9456112 | 147..478 | 1660 | 100 | Plus |
3R | 32079331 | 3R | 9456166..9456445 | 478..757 | 1400 | 100 | Plus |
3R | 32079331 | 3R | 9455588..9455719 | 17..148 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 19:14:00 has no hits.
BS06263.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:38 Download gff for
BS06263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9362-PA | 1..741 | 17..757 | 100 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:51 Download gff for
BS06263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9362-PA | 1..741 | 17..757 | 100 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-20 19:15:58 Download gff for
BS06263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstZ1-RA | 97..842 | 17..765 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 21:33:20 Download gff for
BS06263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstZ1-RA | 97..842 | 17..765 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 21:33:20 Download gff for
BS06263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9455588..9455717 | 17..146 | 100 | <- | Plus |
3R | 9455781..9456111 | 147..477 | 100 | <- | Plus |
3R | 9456166..9456450 | 478..765 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-20 19:15:58 Download gff for
BS06263.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5281310..5281439 | 17..146 | 100 | <- | Plus |
arm_3R | 5281503..5281833 | 147..477 | 100 | <- | Plus |
arm_3R | 5281888..5282172 | 478..765 | 98 | | Plus |
BS06263.5prime Sequence
771 bp (744 high quality bases) assembled on 2005-12-03
> BS06263.5prime
GAAGTTATCAGTCGACATGGCTTCTGCTACCCAATTGACCCACAGAGGTA
TCCATTTGGCCGGACTGTACAGATCTTCTTGGTCTAAGCCCTTGTTCCGA
CATTTGGCAACAAAGCCTATACTGTATTCCTATTGGCCTAGTTCGTGTTC
TTGGAGAGTTCGCGTTGCGCTGGCAATAAAGAAGATTGATTATGACATTA
AGCCGACTTCTTTGCTAAAAACAGTTAGCGGACATGCCTATACGGATGAA
TATAGGGAAGTCAATCCGATGCAAAAGGTTCCCTCGTTGAAGATTGATGG
CCATACCTTGTGCGACTCGGTGGCTATTATCCACTACCTGGAGGAAACTC
GACCTCAGCCAGCACTTCTGCCCCAAGATCCGGTTAAAAGAGCAAAGATC
CGTGAAATTGTGGAGCTCATTTGCTCGGGCATCCAGCCACTGCAAAATGT
ATCTGTCCTAGATCATATAGGCAAGGATCAGAGTCTGCAATGGGCACAAC
ACTGGATTTCTCGAGGATTTCAGGGTCTCGAAAAGGTTCTTTCCCATTCG
GCGGGCAAATTCTGTGTGGGAGATGAGCTCAGCATGGCTGATATTTGCCT
GGTACCTCAGGTGCGCAATGCCAGGAGATACAAAGCTGACCTGACCCCAT
ATCCCACCATAGTACGCTTGAATCAGGAACTACAAGAACTTGATGTCTTC
AAAGCCACTCATCCCAGTACCCAGCCAGATTGTCCACCTGAATTCGCAAA
AAAATAAAAGCTTTCTAGACC
BS06263.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9362-PA | 741 | CG9362-RA | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:06:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstZ1-RA | 913 | CG9362-RA | 102..842 | 17..757 | 3705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 13:06:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9455781..9456112 | 627..296 | 1660 | 100 | Minus |
3R | 32079331 | 3R | 9456166..9456445 | 296..17 | 1400 | 100 | Minus |
3R | 32079331 | 3R | 9455588..9455719 | 757..626 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 13:06:43 has no hits.
BS06263.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:41 Download gff for
BS06263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9362-PA | 1..741 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:53 Download gff for
BS06263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9362-PA | 1..741 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 06:07:47 Download gff for
BS06263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstZ1-RA | 97..842 | 9..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 14:28:27 Download gff for
BS06263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstZ1-RA | 97..842 | 9..757 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 14:28:27 Download gff for
BS06263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9455588..9455717 | 628..757 | 100 | <- | Minus |
3R | 9455781..9456111 | 297..627 | 100 | <- | Minus |
3R | 9456166..9456450 | 9..296 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 06:07:47 Download gff for
BS06263.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5281310..5281439 | 628..757 | 100 | <- | Minus |
arm_3R | 5281503..5281833 | 297..627 | 100 | <- | Minus |
arm_3R | 5281888..5282172 | 9..296 | 98 | | Minus |
BS06263.complete Sequence
773 bp (773 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ635421
> BS06263.complete
GAAGTTATCAGTCGACATGGCTTCTGCTACCCAATTGACCCACAGAGGTA
TCCATTTGGCCGGACTGTACAGATCTTCTTGGTCTAAGCCCTTGTTCCGA
CATTTGGCAACAAAGCCTATACTGTATTCCTATTGGCCTAGTTCGTGTTC
TTGGAGAGTTCGCGTTGCGCTGGCAATAAAGAAGATTGATTATGACATTA
AGCCGACTTCTTTGCTAAAAACAGTTAGCGGACATGCCTATACGGATGAA
TATAGGGAAGTCAATCCGATGCAAAAGGTTCCCTCGTTGAAGATTGATGG
CCATACCTTGTGCGACTCGGTGGCTATTATCCACTACCTGGAGGAAACTC
GACCTCAGCCAGCACTTCTGCCCCAAGATCCGGTTAAAAGAGCAAAGATC
CGTGAAATTGTGGAGCTCATTTGCTCGGGCATCCAGCCACTGCAAAATGT
ATCTGTCCTAGATCATATAGGCAAGGATCAGAGTCTGCAATGGGCACAAC
ACTGGATTTCTCGAGGATTTCAGGGTCTCGAAAAGGTTCTTTCCCATTCG
GCGGGCAAATTCTGTGTGGGAGATGAGCTCAGCATGGCTGATATTTGCCT
GGTACCTCAGGTGCGCAATGCCAGGAGATACAAAGCTGACCTGACCCCAT
ATCCCACCATAGTACGCTTGAATCAGGAACTACAAGAACTTGATGTCTTC
AAAGCCACTCATCCCAGTACCCAGCCAGATTGTCCACCTGAATTCGCAAA
AAAATAAAAGCTTTCTAGACCAT
BS06263.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:37:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstZ1-RA | 741 | CG9362-PA | 1..741 | 17..757 | 3705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:37:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstZ1-RA | 913 | CG9362-RA | 102..842 | 17..757 | 3705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9455781..9456112 | 627..296 | 1660 | 100 | Minus |
3R | 32079331 | 3R | 9456166..9456445 | 296..17 | 1400 | 100 | Minus |
3R | 32079331 | 3R | 9455588..9455719 | 757..626 | 660 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:37:14 has no hits.
BS06263.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:43:10 Download gff for
BS06263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9362-RA | 1..741 | 17..757 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:30:07 Download gff for
BS06263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9362-RA | 93..838 | 9..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:43:46 Download gff for
BS06263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstZ1-RA | 102..832 | 17..747 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:43:10 Download gff for
BS06263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9362-RA | 93..838 | 9..757 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:12:16 Download gff for
BS06263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstZ1-RA | 102..832 | 17..747 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:12:16 Download gff for
BS06263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9456166..9456445 | 17..296 | 100 | | Minus |
3R | 9455598..9455717 | 628..747 | 100 | <- | Minus |
3R | 9455781..9456111 | 297..627 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:43:46 Download gff for
BS06263.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5281320..5281439 | 628..747 | 100 | <- | Minus |
arm_3R | 5281503..5281833 | 297..627 | 100 | <- | Minus |
arm_3R | 5281888..5282167 | 17..296 | 100 | | Minus |
BS06263.pep Sequence
Translation from 16 to 756
> BS06263.pep
MASATQLTHRGIHLAGLYRSSWSKPLFRHLATKPILYSYWPSSCSWRVRV
ALAIKKIDYDIKPTSLLKTVSGHAYTDEYREVNPMQKVPSLKIDGHTLCD
SVAIIHYLEETRPQPALLPQDPVKRAKIREIVELICSGIQPLQNVSVLDH
IGKDQSLQWAQHWISRGFQGLEKVLSHSAGKFCVGDELSMADICLVPQVR
NARRYKADLTPYPTIVRLNQELQELDVFKATHPSTQPDCPPEFAKK*
BS06263.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstZ1-PA | 246 | CG9362-PA | 1..246 | 1..246 | 1305 | 100 | Plus |
GstZ2-PB | 220 | CG9363-PB | 8..220 | 33..246 | 794 | 67.3 | Plus |
GstZ2-PA | 227 | CG9363-PA | 15..227 | 33..246 | 790 | 66.8 | Plus |
GstZ2-PC | 215 | CG9363-PC | 4..215 | 34..246 | 789 | 67.1 | Plus |
GstE6-PA | 222 | CG17530-PA | 3..199 | 33..229 | 151 | 29.4 | Plus |