Clone BS06264 Report

Search the DGRC for BS06264

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:62
Well:64
Vector:pDNR-Dual
Associated Gene/TranscriptCG1239-RA
Protein status:BS06264.pep: full length peptide match
Sequenced Size:16

Clone Sequence Records

BS06264.3prime Sequence

906 bp (853 high quality bases) assembled on 2005-12-03

> BS06264.3prime
ATGGTCTAGAAAGCTTCTACGACTTTGTAAAAATTTGGATCGGTCGCTTG
AATCCTACTTTGCAGTGCTCCGGTATGCCCATAAGTTTCATTTCGGCAAA
GCCCACTTCCGGGCTAAGCAGATATTCGGTGAAATGATCAGGTCGGAATT
TAATTGCATTGTAGTTATCTCTTATTTGTTCCGATAGCTTCTTGCGCCTC
TTGTAGCCGTCGAAGGACTGAGGTTCCAGGATCAGCTTGCCGCCCGGGCG
CAGCTGCAGGTACATGCGTCTGAAGGCCTGCTTCAGGCCGGAATCACAGA
AATTAAGGTGGATCCACTTAGTGACAGACAGGCAGAGTATGACGTCGAAC
TGCGGCCGTTCAATTTCGAGCAGGACGTCGTCCTCCAGGACGTAGTTCCC
GTGCACAAACTGTATGTGGGGTATCCCCTGCCCCGGGGTTGCGTGACGTT
TCAGGTGACTGACGGTTTTTTGGGCATCATTTATTAGCCCCCGATCTATG
TCCAGGCCCACGAGGCTCTTAACCTCGAATTTCCTGGCAATCTGGATGGA
CAGGTGGCCAGAGTTGCAGCCGATGTCAAGCAGCTGCTTGTTCCGAAACA
AATCCGGTTGCGTGCCAAGCACGTCCAGGCGTATGTCGTGAAAATCCTTG
TTCAGGATGCGCTTGCCGTAGTAGTGCTTATAGTTGCCGTACTTGAAGTT
AAGGTCCTTGTTTTGCATGGGCTTTCCGTTTAGATGGAGCCGTTTTTTGG
GACTCTGCGCAGGCGGACGGCTTGTGGCCTCCACATTTGATTCCTCCTTT
TTCAGTCTTTTGGATTCCACTTGCTTTTCATCTAATGTTATTACACATTT
TCGCTTTTTCGCACATTTTTCGGCTTGTTTGCCGGGTCATGNCGTATTGT
TGTTGT

BS06264.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG1239-PA 903 CG1239-RA 35..903 885..17 4345 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:19:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG1239-RC 1052 CG1239-RC 127..1016 906..17 4394 99.7 Minus
CG1239-RB 1058 CG1239-RB 133..1022 906..17 4394 99.7 Minus
CG1239-RA 1051 CG1239-RA 126..1015 906..17 4394 99.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:19:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5733708..5734433 906..181 3574 99.4 Minus
3R 32079331 3R 5734501..5734666 182..17 830 100 Minus
Blast to na_te.dros performed on 2015-02-03 13:19:14 has no hits.

BS06264.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:42 Download gff for BS06264.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1239-PA 14..903 17..906 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:54 Download gff for BS06264.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1239-PA 14..903 17..906 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:59:06 Download gff for BS06264.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1239-RA 126..1015 17..906 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:48:28 Download gff for BS06264.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1239-RA 126..1015 17..906 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:48:28 Download gff for BS06264.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 5733708..5734432 182..906 99 -> Minus
3R 5734502..5734666 17..181 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:59:06 Download gff for BS06264.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1559430..1560154 182..906 99 -> Minus
arm_3R 1560224..1560388 17..181 100   Minus

BS06264.5prime Sequence

932 bp (839 high quality bases) assembled on 2005-12-03

> BS06264.5prime
GAAGTTATCAGTCGACATGGATTTGGAGAACAACAACAATACGCCATTGA
CCGGCAAACAAGCCGAAAAATGTGCGAAAAAGCGAAAATGTGTAATAACA
TTAGATGAAAAGCAAGTGGAATCCAAAAGACTGAAAAAGGAGGAATCAAA
TGTGGAGGCCACAAGCCGTCCGCCTGCGCAGAGTCCCAAAAAACGGCTCC
ATCTAAACGGAAAGCCCATGCAAAACAAGGACCTTAACTTCAAGTACGGC
AACTATAAGCACTACTACGGCAAGCGCATCCTGAACAAGGATTTTCACGA
CATACGCCTGGACGTGCTTGGCACGCAACCGGATTTGTTTCGGAACAAGC
AGCTGCTTGACATCGGCTGCAACTCTGGCCACCTGTCCATCCAGATTGCC
AGGAAATTCGAGGTTAAGAGCCTCGTGGGCCTGGACATAGATCGGGGGCT
AATAAATGATGCCCAAAAAACCGTCAGTCACCTGAAACGTCACGCAACCC
CGGGGCAGGGGATACCCCACATACAGTTTGTGCACGGGAACTACGTCCTG
GAGGACGACGTCCTGCTCGAAATTGAACGGCCGCAGTTCGACGTCATACT
CTGCCTGTCTGTCACTAAGTGGATCCACCTTAATTTCTGTGATTCCGGCC
TGAAGCAGGCCTTCAGACGCATGTACCTGCAGCTGCGCCCGGGCGGCAAG
CTGATCCTGGAACCTCAGTCCTTCGACGGCTACAAGAGGCGCAAGAAGCT
ATCGGAACAAATAAGAGATAACTACAATGCAATTAAATTCCGACCTGATC
ATTTCACCGAATATCTGCTTAGCCCGGAAGTGGGCTTTGCCGAAAATGAA
CTTATGGGCATACCGGAGCACTGCNAAGTAGGATTTCAGCGACCGATCCA
ATTTTTACAAAGTCGTAGAAGCTTTCTAGACC

BS06264.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG1239-PA 903 CG1239-RA 1..829 17..845 4145 100 Plus
CG1239-PA 903 CG1239-RA 833..885 849..901 196 94.3 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:30:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG1239-RC 1052 CG1239-RC 114..1016 17..918 4404 99.3 Plus
CG1239-RB 1058 CG1239-RB 120..1022 17..918 4404 99.3 Plus
CG1239-RA 1051 CG1239-RA 113..1015 17..918 4404 99.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:30:13
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5733695..5734433 17..755 3695 100 Plus
3R 32079331 3R 5734501..5734666 754..918 694 95.8 Plus
Blast to na_te.dros performed on 2015-02-02 11:30:16 has no hits.

BS06264.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:43 Download gff for BS06264.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1239-PA 1..903 17..918 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:56 Download gff for BS06264.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1239-PA 1..903 17..918 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:39:37 Download gff for BS06264.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1239-RA 108..1015 8..918 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:47:21 Download gff for BS06264.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1239-RA 108..1015 8..918 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:47:21 Download gff for BS06264.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 5733690..5734432 8..754 99 -> Plus
3R 5734502..5734666 755..918 96   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:39:37 Download gff for BS06264.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1559412..1560154 8..754 99 -> Plus
arm_3R 1560224..1560388 755..918 96   Plus

BS06264.complete Sequence

935 bp (935 high quality bases) assembled on 2005-12-09

GenBank Submission: FJ638790

> BS06264.complete
GAAGTTATCAGTCGACATGGATTTGGAGAACAACAACAATACGCCATTGA
CCGGCAAACAAGCCGAAAAATGTGCGAAAAAGCGAAAATGTGTAATAACA
TTAGATGAAAAGCAAGTGGAATCCAAAAGACTGAAAAAGGAGGAATCAAA
TGTGGAGGCCACAAGCCGTCCGCCTGCGCAGAGTCCCAAAAAACGGCTCC
ATCTAAACGGAAAGCCCATGCAAAACAAGGACCTTAACTTCAAGTACGGC
AACTATAAGCACTACTACGGCAAGCGCATCCTGAACAAGGATTTTCACGA
CATACGCCTGGACGTGCTTGGCACGCAACCGGATTTGTTTCGGAACAAGC
AGCTGCTTGACATCGGCTGCAACTCTGGCCACCTGTCCATCCAGATTGCC
AGGAAATTCGAGGTTAAGAGCCTCGTGGGCCTGGACATAGATCGGGGGCT
AATAAATGATGCCCAAAAAACCGTCAGTCACCTGAAACGTCACGCAACCC
CGGGGCAGGGGATACCCCACATACAGTTTGTGCACGGGAACTACGTCCTG
GAGGACGACGTCCTGCTCGAAATTGAACGGCCGCAGTTCGACGTCATACT
CTGCCTGTCTGTCACTAAGTGGATCCACCTTAATTTCTGTGATTCCGGCC
TGAAGCAGGCCTTCAGACGCATGTACCTGCAGCTGCGCCCGGGCGGCAAG
CTGATCCTGGAACCTCAGTCCTTCGACGGCTACAAGAGGCGCAAGAAGCT
ATCGGAACAAATAAGAGATAACTACAATGCAATTAAATTCCGACCTGATC
ATTTCACCGAATATCTGCTTAGCCCGGAAGTGGGCTTTGCCGAAATGAAA
CTTATGGGCATACCGGAGCACTGCAAAGTAGGATTCAAGCGACCGATCCA
AATTTTTACAAAGTCGTAGAAGCTTTCTAGACCAT

BS06264.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:46:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG1239-RC 903 CG1239-PC 1..903 17..919 4515 100 Plus
CG1239-RB 903 CG1239-PB 1..903 17..919 4515 100 Plus
CG1239-RA 903 CG1239-PA 1..903 17..919 4515 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG1239-RC 1052 CG1239-RC 114..1016 17..919 4515 100 Plus
CG1239-RB 1058 CG1239-RB 120..1022 17..919 4515 100 Plus
CG1239-RA 1051 CG1239-RA 113..1015 17..919 4515 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:46:56
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5733695..5734433 17..755 3695 100 Plus
3R 32079331 3R 5734501..5734666 754..919 830 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:46:57 has no hits.

BS06264.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:47 Download gff for BS06264.complete
Subject Subject Range Query Range Percent Splice Strand
CG1239-RA 1..903 17..919 100   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:20 Download gff for BS06264.complete
Subject Subject Range Query Range Percent Splice Strand
CG1239-RA 80..987 8..919 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:28 Download gff for BS06264.complete
Subject Subject Range Query Range Percent Splice Strand
CG1239-RA 113..1015 17..919 100   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:47 Download gff for BS06264.complete
Subject Subject Range Query Range Percent Splice Strand
CG1239-RA 80..987 8..919 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:47 Download gff for BS06264.complete
Subject Subject Range Query Range Percent Splice Strand
CG1239-RA 113..1015 17..919 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:47 Download gff for BS06264.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5733695..5734432 17..754 100 -> Plus
3R 5734502..5734666 755..919 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:28 Download gff for BS06264.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1559417..1560154 17..754 100 -> Plus
arm_3R 1560224..1560388 755..919 100   Plus

BS06264.pep Sequence

Translation from 16 to 918

> BS06264.pep
MDLENNNNTPLTGKQAEKCAKKRKCVITLDEKQVESKRLKKEESNVEATS
RPPAQSPKKRLHLNGKPMQNKDLNFKYGNYKHYYGKRILNKDFHDIRLDV
LGTQPDLFRNKQLLDIGCNSGHLSIQIARKFEVKSLVGLDIDRGLINDAQ
KTVSHLKRHATPGQGIPHIQFVHGNYVLEDDVLLEIERPQFDVILCLSVT
KWIHLNFCDSGLKQAFRRMYLQLRPGGKLILEPQSFDGYKRRKKLSEQIR
DNYNAIKFRPDHFTEYLLSPEVGFAEMKLMGIPEHCKVGFKRPIQIFTKS
*

BS06264.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1239-PC 300 CG1239-PC 1..300 1..300 1589 100 Plus
CG1239-PB 300 CG1239-PB 1..300 1..300 1589 100 Plus
CG1239-PA 300 CG1239-PA 1..300 1..300 1589 100 Plus
bin3-PD 1367 CG8276-PD 981..1112 168..299 399 56.1 Plus
bin3-PA 1367 CG8276-PA 981..1112 168..299 399 56.1 Plus
bin3-PD 1367 CG8276-PD 785..865 73..154 195 45.1 Plus