Clone Sequence Records
BS06264.3prime Sequence
906 bp (853 high quality bases) assembled on 2005-12-03
> BS06264.3prime
ATGGTCTAGAAAGCTTCTACGACTTTGTAAAAATTTGGATCGGTCGCTTG
AATCCTACTTTGCAGTGCTCCGGTATGCCCATAAGTTTCATTTCGGCAAA
GCCCACTTCCGGGCTAAGCAGATATTCGGTGAAATGATCAGGTCGGAATT
TAATTGCATTGTAGTTATCTCTTATTTGTTCCGATAGCTTCTTGCGCCTC
TTGTAGCCGTCGAAGGACTGAGGTTCCAGGATCAGCTTGCCGCCCGGGCG
CAGCTGCAGGTACATGCGTCTGAAGGCCTGCTTCAGGCCGGAATCACAGA
AATTAAGGTGGATCCACTTAGTGACAGACAGGCAGAGTATGACGTCGAAC
TGCGGCCGTTCAATTTCGAGCAGGACGTCGTCCTCCAGGACGTAGTTCCC
GTGCACAAACTGTATGTGGGGTATCCCCTGCCCCGGGGTTGCGTGACGTT
TCAGGTGACTGACGGTTTTTTGGGCATCATTTATTAGCCCCCGATCTATG
TCCAGGCCCACGAGGCTCTTAACCTCGAATTTCCTGGCAATCTGGATGGA
CAGGTGGCCAGAGTTGCAGCCGATGTCAAGCAGCTGCTTGTTCCGAAACA
AATCCGGTTGCGTGCCAAGCACGTCCAGGCGTATGTCGTGAAAATCCTTG
TTCAGGATGCGCTTGCCGTAGTAGTGCTTATAGTTGCCGTACTTGAAGTT
AAGGTCCTTGTTTTGCATGGGCTTTCCGTTTAGATGGAGCCGTTTTTTGG
GACTCTGCGCAGGCGGACGGCTTGTGGCCTCCACATTTGATTCCTCCTTT
TTCAGTCTTTTGGATTCCACTTGCTTTTCATCTAATGTTATTACACATTT
TCGCTTTTTCGCACATTTTTCGGCTTGTTTGCCGGGTCATGNCGTATTGT
TGTTGT
BS06264.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1239-PA | 903 | CG1239-RA | 35..903 | 885..17 | 4345 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-03 13:19:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1239-RC | 1052 | CG1239-RC | 127..1016 | 906..17 | 4394 | 99.7 | Minus |
CG1239-RB | 1058 | CG1239-RB | 133..1022 | 906..17 | 4394 | 99.7 | Minus |
CG1239-RA | 1051 | CG1239-RA | 126..1015 | 906..17 | 4394 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-03 13:19:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5733708..5734433 | 906..181 | 3574 | 99.4 | Minus |
3R | 32079331 | 3R | 5734501..5734666 | 182..17 | 830 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-03 13:19:14 has no hits.
BS06264.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:42 Download gff for
BS06264.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-PA | 14..903 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:54 Download gff for
BS06264.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-PA | 14..903 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-09 04:59:06 Download gff for
BS06264.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-RA | 126..1015 | 17..906 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-03 14:48:28 Download gff for
BS06264.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-RA | 126..1015 | 17..906 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-03 14:48:28 Download gff for
BS06264.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5733708..5734432 | 182..906 | 99 | -> | Minus |
3R | 5734502..5734666 | 17..181 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-09 04:59:06 Download gff for
BS06264.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1559430..1560154 | 182..906 | 99 | -> | Minus |
arm_3R | 1560224..1560388 | 17..181 | 100 | | Minus |
BS06264.5prime Sequence
932 bp (839 high quality bases) assembled on 2005-12-03
> BS06264.5prime
GAAGTTATCAGTCGACATGGATTTGGAGAACAACAACAATACGCCATTGA
CCGGCAAACAAGCCGAAAAATGTGCGAAAAAGCGAAAATGTGTAATAACA
TTAGATGAAAAGCAAGTGGAATCCAAAAGACTGAAAAAGGAGGAATCAAA
TGTGGAGGCCACAAGCCGTCCGCCTGCGCAGAGTCCCAAAAAACGGCTCC
ATCTAAACGGAAAGCCCATGCAAAACAAGGACCTTAACTTCAAGTACGGC
AACTATAAGCACTACTACGGCAAGCGCATCCTGAACAAGGATTTTCACGA
CATACGCCTGGACGTGCTTGGCACGCAACCGGATTTGTTTCGGAACAAGC
AGCTGCTTGACATCGGCTGCAACTCTGGCCACCTGTCCATCCAGATTGCC
AGGAAATTCGAGGTTAAGAGCCTCGTGGGCCTGGACATAGATCGGGGGCT
AATAAATGATGCCCAAAAAACCGTCAGTCACCTGAAACGTCACGCAACCC
CGGGGCAGGGGATACCCCACATACAGTTTGTGCACGGGAACTACGTCCTG
GAGGACGACGTCCTGCTCGAAATTGAACGGCCGCAGTTCGACGTCATACT
CTGCCTGTCTGTCACTAAGTGGATCCACCTTAATTTCTGTGATTCCGGCC
TGAAGCAGGCCTTCAGACGCATGTACCTGCAGCTGCGCCCGGGCGGCAAG
CTGATCCTGGAACCTCAGTCCTTCGACGGCTACAAGAGGCGCAAGAAGCT
ATCGGAACAAATAAGAGATAACTACAATGCAATTAAATTCCGACCTGATC
ATTTCACCGAATATCTGCTTAGCCCGGAAGTGGGCTTTGCCGAAAATGAA
CTTATGGGCATACCGGAGCACTGCNAAGTAGGATTTCAGCGACCGATCCA
ATTTTTACAAAGTCGTAGAAGCTTTCTAGACC
BS06264.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 17:21:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1239-PA | 903 | CG1239-RA | 1..829 | 17..845 | 4145 | 100 | Plus |
CG1239-PA | 903 | CG1239-RA | 833..885 | 849..901 | 196 | 94.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-02 11:30:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1239-RC | 1052 | CG1239-RC | 114..1016 | 17..918 | 4404 | 99.3 | Plus |
CG1239-RB | 1058 | CG1239-RB | 120..1022 | 17..918 | 4404 | 99.3 | Plus |
CG1239-RA | 1051 | CG1239-RA | 113..1015 | 17..918 | 4404 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-02 11:30:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5733695..5734433 | 17..755 | 3695 | 100 | Plus |
3R | 32079331 | 3R | 5734501..5734666 | 754..918 | 694 | 95.8 | Plus |
Blast to na_te.dros performed on 2015-02-02 11:30:16 has no hits.
BS06264.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 08:35:43 Download gff for
BS06264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-PA | 1..903 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 09:12:56 Download gff for
BS06264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-PA | 1..903 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-08 06:39:37 Download gff for
BS06264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-RA | 108..1015 | 8..918 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-02 12:47:21 Download gff for
BS06264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-RA | 108..1015 | 8..918 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-02 12:47:21 Download gff for
BS06264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5733690..5734432 | 8..754 | 99 | -> | Plus |
3R | 5734502..5734666 | 755..918 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-08 06:39:37 Download gff for
BS06264.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1559412..1560154 | 8..754 | 99 | -> | Plus |
arm_3R | 1560224..1560388 | 755..918 | 96 | | Plus |
BS06264.complete Sequence
935 bp (935 high quality bases) assembled on 2005-12-09
GenBank Submission: FJ638790
> BS06264.complete
GAAGTTATCAGTCGACATGGATTTGGAGAACAACAACAATACGCCATTGA
CCGGCAAACAAGCCGAAAAATGTGCGAAAAAGCGAAAATGTGTAATAACA
TTAGATGAAAAGCAAGTGGAATCCAAAAGACTGAAAAAGGAGGAATCAAA
TGTGGAGGCCACAAGCCGTCCGCCTGCGCAGAGTCCCAAAAAACGGCTCC
ATCTAAACGGAAAGCCCATGCAAAACAAGGACCTTAACTTCAAGTACGGC
AACTATAAGCACTACTACGGCAAGCGCATCCTGAACAAGGATTTTCACGA
CATACGCCTGGACGTGCTTGGCACGCAACCGGATTTGTTTCGGAACAAGC
AGCTGCTTGACATCGGCTGCAACTCTGGCCACCTGTCCATCCAGATTGCC
AGGAAATTCGAGGTTAAGAGCCTCGTGGGCCTGGACATAGATCGGGGGCT
AATAAATGATGCCCAAAAAACCGTCAGTCACCTGAAACGTCACGCAACCC
CGGGGCAGGGGATACCCCACATACAGTTTGTGCACGGGAACTACGTCCTG
GAGGACGACGTCCTGCTCGAAATTGAACGGCCGCAGTTCGACGTCATACT
CTGCCTGTCTGTCACTAAGTGGATCCACCTTAATTTCTGTGATTCCGGCC
TGAAGCAGGCCTTCAGACGCATGTACCTGCAGCTGCGCCCGGGCGGCAAG
CTGATCCTGGAACCTCAGTCCTTCGACGGCTACAAGAGGCGCAAGAAGCT
ATCGGAACAAATAAGAGATAACTACAATGCAATTAAATTCCGACCTGATC
ATTTCACCGAATATCTGCTTAGCCCGGAAGTGGGCTTTGCCGAAATGAAA
CTTATGGGCATACCGGAGCACTGCAAAGTAGGATTCAAGCGACCGATCCA
AATTTTTACAAAGTCGTAGAAGCTTTCTAGACCAT
BS06264.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:46:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1239-RC | 903 | CG1239-PC | 1..903 | 17..919 | 4515 | 100 | Plus |
CG1239-RB | 903 | CG1239-PB | 1..903 | 17..919 | 4515 | 100 | Plus |
CG1239-RA | 903 | CG1239-PA | 1..903 | 17..919 | 4515 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:46:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1239-RC | 1052 | CG1239-RC | 114..1016 | 17..919 | 4515 | 100 | Plus |
CG1239-RB | 1058 | CG1239-RB | 120..1022 | 17..919 | 4515 | 100 | Plus |
CG1239-RA | 1051 | CG1239-RA | 113..1015 | 17..919 | 4515 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:46:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5733695..5734433 | 17..755 | 3695 | 100 | Plus |
3R | 32079331 | 3R | 5734501..5734666 | 754..919 | 830 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:46:57 has no hits.
BS06264.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-22 00:16:47 Download gff for
BS06264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-RA | 1..903 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 03:57:20 Download gff for
BS06264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-RA | 80..987 | 8..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:58:28 Download gff for
BS06264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-RA | 113..1015 | 17..919 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-22 00:16:47 Download gff for
BS06264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-RA | 80..987 | 8..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:26:47 Download gff for
BS06264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1239-RA | 113..1015 | 17..919 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:26:47 Download gff for
BS06264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5733695..5734432 | 17..754 | 100 | -> | Plus |
3R | 5734502..5734666 | 755..919 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:58:28 Download gff for
BS06264.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1559417..1560154 | 17..754 | 100 | -> | Plus |
arm_3R | 1560224..1560388 | 755..919 | 100 | | Plus |
BS06264.pep Sequence
Translation from 16 to 918
> BS06264.pep
MDLENNNNTPLTGKQAEKCAKKRKCVITLDEKQVESKRLKKEESNVEATS
RPPAQSPKKRLHLNGKPMQNKDLNFKYGNYKHYYGKRILNKDFHDIRLDV
LGTQPDLFRNKQLLDIGCNSGHLSIQIARKFEVKSLVGLDIDRGLINDAQ
KTVSHLKRHATPGQGIPHIQFVHGNYVLEDDVLLEIERPQFDVILCLSVT
KWIHLNFCDSGLKQAFRRMYLQLRPGGKLILEPQSFDGYKRRKKLSEQIR
DNYNAIKFRPDHFTEYLLSPEVGFAEMKLMGIPEHCKVGFKRPIQIFTKS
*
BS06264.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 03:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1239-PC | 300 | CG1239-PC | 1..300 | 1..300 | 1589 | 100 | Plus |
CG1239-PB | 300 | CG1239-PB | 1..300 | 1..300 | 1589 | 100 | Plus |
CG1239-PA | 300 | CG1239-PA | 1..300 | 1..300 | 1589 | 100 | Plus |
bin3-PD | 1367 | CG8276-PD | 981..1112 | 168..299 | 399 | 56.1 | Plus |
bin3-PA | 1367 | CG8276-PA | 981..1112 | 168..299 | 399 | 56.1 | Plus |
bin3-PD | 1367 | CG8276-PD | 785..865 | 73..154 | 195 | 45.1 | Plus |